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Entry information : RcoPrx06 (RcPOX2 / RcPrx2)
Entry ID 8551
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2015-11-09 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoPrx06 (RcPOX2 / RcPrx2)
Name (synonym) RcoPrx06 (RcPOX2 / RcPrx2)
Class Class III peroxidase    [Orthogroup: Prx028]
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoPrx06
start..stop		 S start..stop
CroPrx09 527 0 1..319 1..321
NtPrx07-1A 507 0 1..319 1..328
NtPrx07-1B 503 0 1..319 1..317
IaquPrx12 487 1.92e-175 1..319 1..320
Literature and cross-references RcoPrx06 (RcPOX2 / RcPrx2)
Literature Veremeichik,G.N., Shkryl,Y.N., Bulgakov,V.P., Avramenko,T.V. and Zhuravlev,Y.N. Molecular cloning and characterization of seven class III peroxidases induced by overexpression of the agrobacterial rolB gene in Rubia cordifolia transgenic callus cultures. Plant Cell Rep. 31 (6), 1009-1019 (2012)
mRNA ref. GenBank:   GQ380496.2
Protein sequence: RcoPrx06 (RcPOX2 / RcPrx2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   319 (300)
PWM (Da):   %s   35023.08 (32967.1) Transmb domain:   %s   i9-31o
PI (pH):   %s   6.24 (6.24) Peptide Signal:   %s   cut: 20 range:20-319
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MATWNLFLTI MAVSMTTSGW SVYGLSMQYY SMACPFAEQI VRDTVNRALR SDPTLAAGLI RMHFHDCFIQ GCDASVLIDS TKDNVAEKDS PANLSLRGYE VIDDAKDQLE SQCPGVVSCA  DIVAIAATTA VSFAGGPYYD IPKGRKDGRI SKIQDTINLP SPTLNSSELI KMFDQHGFTA QEMVALSGAH TPGVARCSSF KHRLSNFDST HDVDPAIDTQ FLKTLSKTCS GGDNKNKTFD 
TTRNDFDNDY FNQLQMKAGV LFSDQTLLAS PRTRKIVNGY AFNQAMFFMD FQRAMFKMGL LDVKEGSKGE VRADCSKIN 

Retrieve as FASTA  
Remarks Complete sequence.
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTACTT GGAACTTATT TCTTACAATA ATGGCTGTGT CTATGACAAC CAGTGGATGG AGTGTATATG GGCTTAGCAT GCAATACTAC TCAATGGCTT GCCCATTTGC TGAACAAATT  GTGAGGGATA CTGTGAACAG GGCATTGCGA TCTGATCCTA CGCTTGCAGC CGGGCTTATT AGGATGCATT TTCATGACTG CTTCATTCAG GGATGCGATG CGTCGGTTCT GATAGATTCA  ACAAAAGATA ATGTTGCTGA AAAGGACTCC CCAGCAAACT TGAGCTTAAG GGGTTATGAG GTGATAGATG ATGCTAAAGA CCAACTGGAA AGCCAATGTC CGGGAGTCGT CTCATGTGCT  GATATTGTTG CTATTGCCGC CACAACTGCT GTTTCCTTTG CTGGAGGTCC CTATTACGAC ATCCCAAAGG GAAGGAAAGA CGGAAGAATA TCAAAAATTC AAGACACCAT TAATTTGCCA  TCACCAACTC TCAATTCTTC AGAGCTTATC AAGATGTTCG ATCAACATGG TTTCACTGCA CAAGAAATGG TAGCTTTGTC CGGGGCACAC ACGCCAGGAG TGGCAAGGTG CTCATCATTC  AAGCACAGAC TGAGTAACTT TGACTCCACC CATGATGTGG ATCCTGCCAT AGACACACAG TTCTTGAAAA CATTATCCAA GACATGCAGT GGTGGCGACA ATAAAAACAA AACATTTGAC  ACAACTAGAA ACGATTTTGA CAATGACTAC TTCAACCAGT TGCAGATGAA GGCTGGGGTG CTTTTCTCTG ACCAAACACT TTTAGCAAGC CCAAGAACAA GGAAAATTGT CAACGGTTAT  GCCTTCAACC AAGCCATGTT CTTCATGGAC TTTCAACGAG CTATGTTCAA GATGGGCTTG CTTGATGTTA AGGAAGGTTC TAAAGGTGAA GTCAGGGCCG ACTGTAGTAA AATTAATTAG 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATAAACATTA CACATTTCCA TTTCTATACA TATGCATAAG AATTAGAGAA AAACAAAAAT CAAATTCTTG AAGCATATAA CACTGAAAAA TTGTTGTCCA AAAGAAGATC ACAATATGGC  TACTTGGAAC TTATTTCTTA CAATAATGGC TGTGTCTATG ACAACCAGTG GATGGAGTGT ATATGGGCTT AGCATGCAAT ACTACTCAAT GGCTTGCCCA TTTGCTGAAC AAATTGTGAG  GGATACTGTG AACAGGGCAT TGCGATCTGA TCCTACGCTT GCAGCCGGGC TTATTAGGAT GCATTTTCAT GACTGCTTCA TTCAGGGATG CGATGCGTCG GTTCTGATAG ATTCAACAAA  AGATAATGTT GCTGAAAAGG ACTCCCCAGC AAACTTGAGC TTAAGGGGTT ATGAGGTGAT AGATGATGCT AAAGACCAAC TGGAAAGCCA ATGTCCGGGA GTCGTCTCAT GTGCTGATAT  TGTTGCTATT GCCGCCACAA CTGCTGTTTC CTTTGCTGGA GGTCCCTATT ACGACATCCC AAAGGGAAGG AAAGACGGAA GAATATCAAA AATTCAAGAC ACCATTAATT TGCCATCACC  AACTCTCAAT TCTTCAGAGC TTATCAAGAT GTTCGATCAA CATGGTTTCA CTGCACAAGA AATGGTAGCT TTGTCCGGGG CACACACGCC AGGAGTGGCA AGGTGCTCAT CATTCAAGCA  CAGACTGAGT AACTTTGACT CCACCCATGA TGTGGATCCT GCCATAGACA CACAGTTCTT GAAAACATTA TCCAAGACAT GCAGTGGTGG CGACAATAAA AACAAAACAT TTGACACAAC  TAGAAACGAT TTTGACAATG ACTACTTCAA CCAGTTGCAG ATGAAGGCTG GGGTGCTTTT CTCTGACCAA ACACTTTTAG CAAGCCCAAG AACAAGGAAA ATTGTCAACG GTTATGCCTT  CAACCAAGCC ATGTTCTTCA TGGACTTTCA ACGAGCTATG TTCAAGATGG GCTTGCTTGA TGTTAAGGAA GGTTCTAAAG GTGAAGTCAG GGCCGACTGT AGTAAAATTA ATTAGTGTAA  TTAATCTTCA TTTCCTATGA TTATTGTAGT ATTGTGTCAC TCACAGACTG TAATATTAGT ATTGCATGCA TGTATACTGT AATTGGAATT TTCTATTGTG AGTATATATA TTTAGTATCT 
CTAAAAAAAA AAAAAAAAAA AAAAAAAAAA 

Retrieve as FASTA