1. Browse the Database
  2. View Redoxidase
Entry information : SbPrx88 (Sobic.005G104100.1 [2.1] / SB05G009400 [1.4])
Entry ID 865
Creation 2005-12-25 (Christophe Dunand)
Last sequence changes 2005-12-25 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx88 (Sobic.005G104100.1 [2.1] / SB05G009400 [1.4])
Name (synonym) SbPrx88 (Sobic.005G104100.1 [2.1] / SB05G009400 [1.4])
Class Class III peroxidase    [Orthogroup: Prx014]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer Heat shock stress
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx88
start..stop		 S start..stop
ZmPrx45 585 0 30..341 33..345
SiPrx110 572 0 4..341 3..339
TaPrx75-1D 527 0 18..341 7..329
TaPrx75-1B 526 0 18..341 7..329
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 18669847..18670278 430 N° 2 18670361..18670523 161 N° 3 18670682..18671112 429  
join(18669847..18670278,18670361..18670523,18670682..18671112)


exon

Literature and cross-references SbPrx88 (Sobic.005G104100.1 [2.1] / SB05G009400 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_5 (18669847..18671112)
EST ref. GenBank:   CD204861 [5' end]
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.6278.1
Protein sequence: SbPrx88 (Sobic.005G104100.1 [2.1] / SB05G009400 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   341 (308)
PWM (Da):   %s   35691.15 (32416.4) Transmb domain:   %s   i7-29o
PI (pH):   %s   6.13 (5.38) Peptide Signal:   %s   cut: 34 range:34-341
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATRRCSSSNVPPAGLLAVPCLLLLLLAGVSNGQLQVGFYSNSCP
GAESTVASVVRQSGSADPTILPALIRLQFHDCFVRGCDASVLIKGGAGGNNAEVDNSKHQGLRGVEIIEGAKTQL
EALCPGVVSCADIVVLAARDAISFTGGPSFDVPTGRLDGKVSNLRDADALPDVHDGIDALRSKFRANGLDEKDLVLLTAAHTVGTTACFFLQDRLYNFPLPGGGRGSDPTIPPGFLSELK
SRCAPGDLNTRLALDRGSEGVFDTSILRNIRNGFAVIGSDAALYNDTATVDVVDSYSGLLSNFFGPYFRQDFADAMVRMGSIGVVTGRKQGEVRKVCSKFN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, introns 2 and 3) and 1 EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCACCAGAAGGTGTAGTAGTAGCAACGTGCCACCTGCAGGCTTATTGGCCGTGCCATGCTTGCTGCTGCTGCTGCTCGCCGGCGTCTCCAACGGGCAGCTCCAGGTGGGGTTCTAC
TCCAACTCCTGCCCCGGCGCCGAGTCCACCGTCGCCTCCGTCGTCCGGCAGTCCGGGTCCGCCGACCCCACCATCCTCCCGGCGCTCATCCGCCTCCAGTTCCACGACTGCTTCGTCCGC
GGCTGCGACGCCTCGGTGCTCATCAAGGGCGGCGCCGGCGGCAACAACGCCGAGGTGGACAACAGCAAGCACCAGGGCCTCCGCGGCGTGGAGATCATCGAGGGCGCCAAGACCCAGCTC
GAGGCCCTGTGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGTCCTCGCCGCCCGAGACGCCATCTCCTTCTCGTACGTACACTTCCACTACTACCGCTATCTATGTGCACATTGATAA
CTGAGCTCTGACCGATGACCGTCGGCGTGGATGCAGACCGGCGGGCCGTCGTTCGACGTGCCGACGGGGCGGCTCGACGGGAAGGTGTCCAACCTGCGTGACGCCGACGCGCTGCCGGAC
GTGCACGACGGCATCGACGCGCTCCGTTCCAAGTTCCGCGCCAACGGACTCGACGAGAAGGACCTCGTCCTCCTCACCGCGGTACGCACGAATGCATCGATAGATCTCGCTGCTCTTTTT
CCTTGAATGCATGCACGATCGACGGACGCGCGAACTGAACACGTGCATATATATATGCATGTATATATATATATATATATATATATATATATATATATATATATATGATGATGATGCAGC
TGCGCACACGGTGGGGACGACGGCGTGCTTCTTCCTGCAGGACCGGCTGTACAACTTCCCGCTGCCCGGCGGCGGCCGGGGCTCGGACCCGACCATCCCGCCGGGGTTCCTGTCGGAGCT
CAAGTCGCGGTGCGCGCCGGGGGACTTGAACACGCGGCTGGCGCTGGACCGGGGCAGCGAGGGCGTGTTCGACACCTCGATCCTCCGGAACATCCGGAACGGGTTCGCCGTGATCGGCTC
CGACGCGGCGCTCTACAACGACACGGCGACCGTCGACGTCGTGGACTCCTACTCCGGCCTGCTCAGCAACTTCTTCGGGCCCTACTTCCGGCAGGACTTCGCGGACGCCATGGTACGCAT
GGGCAGCATCGGCGTGGTCACCGGCCGGAAGCAGGGCGAGGTCCGGAAGGTCTGCTCCAAGTTCAACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCACCAGAAGGTGTAGTAGTAGCAACGTGCCACCTGCAGGCTTATTGGCCGTGCCATGCTTGCTGCTGCTGCTGCTCGCCGGCGTCTCCAACGGGCAGCTCCAGGTGGGGTTCTAC
TCCAACTCCTGCCCCGGCGCCGAGTCCACCGTCGCCTCCGTCGTCCGGCAGTCCGGGTCCGCCGACCCCACCATCCTCCCGGCGCTCATCCGCCTCCAGTTCCACGACTGCTTCGTCCGC
GGCTGCGACGCCTCGGTGCTCATCAAGGGCGGCGCCGGCGGCAACAACGCCGAGGTGGACAACAGCAAGCACCAGGGCCTCCGCGGCGTGGAGATCATCGAGGGCGCCAAGACCCAGCTC
GAGGCCCTGTGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGTCCTCGCCGCCCGAGACGCCATCTCCTTCACCGGCGGGCCGTCGTTCGACGTGCCGACGGGGCGGCTCGACGGGAAG
GTGTCCAACCTGCGTGACGCCGACGCGCTGCCGGACGTGCACGACGGCATCGACGCGCTCCGTTCCAAGTTCCGCGCCAACGGACTCGACGAGAAGGACCTCGTCCTCCTCACCGCTGCG
CACACGGTGGGGACGACGGCGTGCTTCTTCCTGCAGGACCGGCTGTACAACTTCCCGCTGCCCGGCGGCGGCCGGGGCTCGGACCCGACCATCCCGCCGGGGTTCCTGTCGGAGCTCAAG
TCGCGGTGCGCGCCGGGGGACTTGAACACGCGGCTGGCGCTGGACCGGGGCAGCGAGGGCGTGTTCGACACCTCGATCCTCCGGAACATCCGGAACGGGTTCGCCGTGATCGGCTCCGAC
GCGGCGCTCTACAACGACACGGCGACCGTCGACGTCGTGGACTCCTACTCCGGCCTGCTCAGCAACTTCTTCGGGCCCTACTTCCGGCAGGACTTCGCGGACGCCATGGTACGCATGGGC
AGCATCGGCGTGGTCACCGGCCGGAAGCAGGGCGAGGTCCGGAAGGTCTGCTCCAAGTTCAACTGA

Retrieve as FASTA