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Entry information : SbPrx64 (Sobic.003G167300.1 [2.1] / Sb03g016510 [1.4])
Entry ID 870
Creation 2008-10-20 (Christophe Dunand)
Last sequence changes 2008-10-20 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx64 (Sobic.003G167300.1 [2.1] / Sb03g016510 [1.4])
Name (synonym) SbPrx64 (Sobic.003G167300.1 [2.1] / Sb03g016510 [1.4])
Class Class III peroxidase    [Orthogroup: Prx198]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer Nitrogen starvation
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx64
start..stop		 S start..stop
SiPrx19 563 0 4..323 3..322
TaPrx198-1A 494 4.3e-178 8..323 4..319
TaPrx198-1B 494 4.74e-178 8..323 4..319
TaPrx198-1D 492 2.25e-177 8..323 5..320
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '870' 'join(26985631..26985840,26989243..26990004)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 26985631..26985840 208 N° 2 26989243..26990004 760  
join(26985631..26985840,26989243..26990004)


exon

Literature and cross-references SbPrx64 (Sobic.003G167300.1 [2.1] / Sb03g016510 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_3 (26985631..26990004)
Protein sequence: SbPrx64 (Sobic.003G167300.1 [2.1] / Sb03g016510 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   323 (302)
PWM (Da):   %s   33805.43 (31741.3) Transmb domain:   %s   i5-27o
PI (pH):   %s   9.15 (9.30) Peptide Signal:   %s   cut: 25 range:22-323
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATSSLTFGVILSCALLLATATHGLQVGYYKKTCPSAEVLVRAAV
KKALLANPGVGAGLIRMLFHDCFVEGCDASVLLDPTQENPQPEKLGRPNNPSLRGYEVIDAAKSAVEKACPGTVSCADIVAFAGRDASYLLSNSKVSFHMPAGRLDGRKSLASETGVFLPGPSSNLSSLVSAFAGKGLSAEDMVV
LSGAHSIGRSHCTSFVQTRLSAPSDIAASLATLLRKQCPANPTTANDAVVSQDVVSPDVLDNQFYKNVLAHNVLFTSDAVLLSAPNTARMVRANARFAGSWEKKFAKAMVKMAAIGVKTG
RDGEIRKNCRLVN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, intron 1) and 2 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTACCAGCAGTTTGACGTTCGGCGTAATACTCTCATGCGCCCTGCTTTTGGCCACGGCGACCCATGGTCTCCAGGTGGGTTACTACAAGAAGACGTGTCCCAGTGCCGAGGTCCTC
GTGAGGGCCGCGGTAAAGAAGGCCCTGCTGGCTAACCCCGGCGTCGGCGCCGGGCTCATCCGCATGCTCTTCCACGACTGCTTCGTCGAGAGGTACATCTTGCATTGATCTTCTTTGCTG
GTATACTAGAACATTGGGCGCCCTTTGGGCGCCCTATCTTGGCCGGATTAAATTAGATACTAAAGTATTTAGTCAAATTTATAAAAATAATTTTCTTTTTTCATAAAAAATAAAATTAAG
AAAATTGCATGTAACATAGTAAGGCACCATTTAGATCCCTTTATTTTAGAGGAATTAGAATCCAATTAATGGGTCAGGCTATTTTGCCTAAAATTTGATATTCTACAAATTTTTCAGGCT
CACAAATAAACCTATCTCAAATTCATAGGGTGAAGATGGAAATAGATTTTATATATCAGCAGCTATATTTATACCCTTCAACTTATAGCACACTCCTCTTTAACTCATTTCCCTGCAATA
GAAATACAATATAACAAGTATGACCCATGTATGGCTAACAATAATATGCAAATATATTTCATATGCAACCATATTAGCTTAATTAATACATGACTAAATTGTAATTATTATAATGAATTT
GATTCCAAGGATCCAAATGGGTCCTAATATTCTTGCACAATAAAAGAAAATTAAATCATCAATGTCATCGGGTATATTTGAAAACTCTTACATCAGGCAGCACTATAAAGGGTCATTGTA
CAATCACAGACATCATTTTGGGGGTAAGAACCATAATGAACTTCAAAAGAGTTTGTCCTAAACTTGGTCCAAAACAAAAACTCGTAGAATCTCTAAAATAACGTGAAGTTAACATCAATT
TATACTCCTAAACTCCTCAACGGCGGCTGTGCATAGGAGTTGCTTGACGACAACAGCAAGTCTTTACCGCATCTTTGTGTTCCTGCTTCAAAACTCGGCAAGACCACTAAACAAAGTTTA
ATCTTATCCGAACTTGAAAAGAAACATCCTACAAGCTATCTAGAAAATTAGCTTTTCGGCAAGTCCAAAATAAGTGGTGACAAGGCCACTGAAATGGTATAGATGATGTACAGAGTTATA
GAGTTATAGGCTGGGTAGCTAATTTTGCCAATATAATGAATGCTAATGATCTTGTAGTGAGCATGTAATTACTGATCATAAAAAATTATAAATACAAGCAGCAAGCTAAAAAACATGGTA
ACAATCACTAAAATATCACACAAAATAAATTGAGCAAATCATATAACAGTATGATATACACTCTACTGAAGACAGGGTATGCACCTATTGTTGTTGTAAGCTAGCATTGGTCCAATTAAA
GTGATAACCATTGATTAAAGAATAAATATGTGCTGACAAATAGTACTATTTTCTTCGATCAAAATATTGTGTGCTCGTGTCTAGGTCAATAACCAATCTATTGTTTACTTCTGAGCTGGT
GCAAAGAAACAACTCAGTTCATTATAATTGTAATTTTAGAACGGTTCAGACTTCTGACATGCTGGCAAACAAGAAAGAGAATAGAAGTATTAAAATCCATCAGGTTATTTTGTCTTGTTC
ACCGGATAGCATTTCAGTTGATTCATGCAGAGTTATAGGTGAAAAAAATGTAAAATTGTATCAGCAATTCAGGGAACACAGAAATACCAACTCTTGAGGACTCAAATCCATCAGGCAAAT
CCAGTGGAGGATTGGGGCAGGCTAACACATTGTGTTACTTGCCACCATGAAACTTTACTGTCAGTTAAATCAAGAAGTCTAAGATCTGAAATATGAAAACAATTGTCAGAATAAATGAAA
ACTCAGACTTTAGTGTGAATGCTGAATTAAGCCCCTATAGAAACATCTGGGATACTTCTGTCTCGTCGAGAAGGCACACATCTGTTCTGAATGCAGAGGAAAATATGTAATCAGGGATTG
TTATTAATGAAATCCAACAAAATACAATGATGGTTGCACAAATATTTACTTTTCTGAAAGGAAGCAACGCGTTGTGACACTAAAATAAATTACAAAGGCACATATTCATGCTAGCTATTA
TCATGCACTGCACTAACCTTGTCATGGATGCGGCAACAGAGGAGAAATTGGAACCAAGGCAATCGAGTCTACAAATTATCAAATCTAATAACTAATCACAATAATCAATCAACGCAAGAA
GAACTATTTACATTGTTTAAAGTCCACACCTTCAGTGTCTAAACCGCTACTTATCCCTCCTGACACCTTCACATATATTGTCAAGCAGAAAATCTACATGAAAGTTAAGGGCTACAGTCA
CAAAACTTTTCAATCAGAGCTGATGTTGTTTGACATTCTGGAGAGGCAATAGAAGCACACAAAAATATCCTTGCTCGAGAAAATTTTATTTCACTTCATATGAATTTGTACCTGCAAAAA
TATTGACACAGGCAACCACCATAAATAGCCTACATGTAAAATTTCTTTAATTTAGTAGACCAGAAGGGGATTCACATGATCAGACGCAAGTTGATTTGAAATAATATGCGCTGGCCACTT
GGTCGTTGTGAAGCTCAACACAGTGACATTGAAGATGCATCACAAATTCACAGGTAAATCAATCAACATTCAGCAAGATTCAAATCAAACTAACCAATCGTGAGCTCACCTGCCAAGAAC
CATGACAAGCATGTCGTGCTGCTAGATCCGATCCAACGCTAGGCTTCAGTTGCCAGATCCACCATGTCGGCAGCCATGAAGCACCAAACCATAAAAACCCATGAGATCAAGTCTAAATCA
CCCCCCAACCGAACCCTAGGACTTGAAAGCCCCCACGTTTCTCACCTTGAGCCTCTTTGGGGGAGAGAAGGGGGATGGCGATGGGACTTCCGCCTGATCTGCGCACTACCGGATCTCACA
AGCTCCCTCATGCTACAGAGGTCGCATGGCTTCCCATGCTCAAGCCATGATGGCACTCGTGCCGGGAAGAAGATGGCGTGGGGTGGAGAGGGCAGGGAGGAGCTAGTGCTTCCTTCTCTG
GCGCTGACCATGGCCACCATGCGCGGCCACCCGGTGAGCCGTTGCCCACGGGAGTCGCGCCCCATGGGTCGTGGTGGAGGGCGAGGAGCACGACGGCGAGATGGGATGCGCAGGGGGGCG
GCGCGGCGAGCCGCATCGATGCGTGGGAGCAACCAGAGGAATGAGGAGGGGATTAGCGTTTGCTTGTTTTGAGTGTGGGGGTTCTTTACAAAATGTCCAAGGACTGCGGGTTGATTACTA
AAAAACGGTGGACGTTTTTGCAAAATGAATAGAGACGCGTGTCGCCGCGTGGAGAAGCCAGCAATGCCTCGAATTCTCTCGTGGCTCCAATCTGGAGTGACTTTTAATAACTCCTGATTA
GTAATTGCATCGATGCACGCATGGGATGGACGACGAGAACTGGCACGTCTATATATACACACGTACTCATCCTACACGTACGTGTATGTAATAAGTGTCACTGATGACCAAGCAAATGAG
TCTACTCTGTGCAGGGCTGTGACGCGTCCGTTCTGCTGGACCCGACGCAGGAGAACCCGCAGCCAGAGAAGCTGGGGCGTCCCAACAACCCCAGCCTACGAGGCTACGAGGTGATCGACG
CGGCCAAGAGCGCAGTCGAGAAAGCGTGCCCTGGCACGGTGTCTTGCGCTGACATCGTCGCCTTCGCGGGGCGCGACGCGTCCTACTTGCTCAGTAACTCCAAGGTTAGCTTCCACATGC
CGGCAGGCCGGCTGGATGGACGCAAGTCACTCGCCAGCGAGACAGGTGTATTCCTGCCCGGCCCGTCCTCCAACCTTTCCAGCCTCGTCTCAGCCTTCGCCGGCAAGGGGCTCAGCGCCG
AGGACATGGTCGTGCTCTCGGGCGCGCACTCCATCGGTCGCTCCCACTGCACCTCCTTCGTCCAGACCCGCCTGAGCGCCCCCTCCGACATCGCGGCGTCGCTGGCGACGTTGCTGAGGA
AGCAGTGCCCCGCCAACCCGACCACCGCCAACGACGCGGTGGTGTCCCAGGACGTGGTCAGCCCGGACGTGCTGGACAACCAGTTCTACAAGAACGTGCTGGCACACAATGTGCTCTTCA
CCTCGGACGCCGTGCTGCTATCGGCGCCCAACACCGCGAGGATGGTCCGTGCCAACGCCAGGTTCGCGGGCTCCTGGGAGAAGAAGTTCGCCAAGGCCATGGTGAAGATGGCCGCCATTG
GCGTGAAGACCGGCCGTGACGGCGAGATAAGGAAGAACTGCAGGCTCGTCAACTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTACCAGCAGTTTGACGTTCGGCGTAATACTCTCATGCGCCCTGCTTTTGGCCACGGCGACCCATGGTCTCCAGGTGGGTTACTACAAGAAGACGTGTCCCAGTGCCGAGGTCCTC
GTGAGGGCCGCGGTAAAGAAGGCCCTGCTGGCTAACCCCGGCGTCGGCGCCGGGCTCATCCGCATGCTCTTCCACGACTGCTTCGTCGAGGGCTGTGACGCGTCCGTTCTGCTGGACCCG
ACGCAGGAGAACCCGCAGCCAGAGAAGCTGGGGCGTCCCAACAACCCCAGCCTACGAGGCTACGAGGTGATCGACGCGGCCAAGAGCGCAGTCGAGAAAGCGTGCCCTGGCACGGTGTCT
TGCGCTGACATCGTCGCCTTCGCGGGGCGCGACGCGTCCTACTTGCTCAGTAACTCCAAGGTTAGCTTCCACATGCCGGCAGGCCGGCTGGATGGACGCAAGTCACTCGCCAGCGAGACA
GGTGTATTCCTGCCCGGCCCGTCCTCCAACCTTTCCAGCCTCGTCTCAGCCTTCGCCGGCAAGGGGCTCAGCGCCGAGGACATGGTCGTGCTCTCGGGCGCGCACTCCATCGGTCGCTCC
CACTGCACCTCCTTCGTCCAGACCCGCCTGAGCGCCCCCTCCGACATCGCGGCGTCGCTGGCGACGTTGCTGAGGAAGCAGTGCCCCGCCAACCCGACCACCGCCAACGACGCGGTGGTG
TCCCAGGACGTGGTCAGCCCGGACGTGCTGGACAACCAGTTCTACAAGAACGTGCTGGCACACAATGTGCTCTTCACCTCGGACGCCGTGCTGCTATCGGCGCCCAACACCGCGAGGATG
GTCCGTGCCAACGCCAGGTTCGCGGGCTCCTGGGAGAAGAAGTTCGCCAAGGCCATGGTGAAGATGGCCGCCATTGGCGTGAAGACCGGCCGTGACGGCGAGATAAGGAAGAACTGCAGG
CTCGTCAACTAG

Retrieve as FASTA