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Entry information : CclPrx84 (clementine0.9_027900m / nd [1.0])
Entry ID 8715
Creation 2011-06-25 (Qiang Li)
Last sequence changes 2015-04-15 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-04-15 (Christophe Dunand)
Peroxidase information: CclPrx84 (clementine0.9_027900m / nd [1.0])
Name (synonym) CclPrx84 (clementine0.9_027900m / nd [1.0])
Class Class III peroxidase    [Orthogroup: Prx013]
Taxonomy Eukaryota Viridiplantae Streptophyta Rutaceae Citrus
Organism Citrus clementina    [TaxId: 85681 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CclPrx84
start..stop		 S start..stop
CclPrx113 624 0 1..319 1..318
RcPrx52 493 6.68e-178 1..319 1..317
PpePrx51 478 5.34e-172 1..319 1..319
PtPrx40 479 7.41e-172 7..319 51..360
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 622390..622602 211 N° 2 621529..621723 193 N° 3 620944..621109 164 N° 4 620018..620401 382
complement(join(620018..620401,620944..621109,621529..621723,622390..622602))


exon

Literature and cross-references CclPrx84 (clementine0.9_027900m / nd [1.0])
DNA ref. Phytozome 12:   scaffold_5 (12944890..12967801)
Protein sequence: CclPrx84 (clementine0.9_027900m / nd [1.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (294)
PWM (Da):   %s   33972.57 (31274.2) Transmb domain:   %s   i9-31o
PI (pH):   %s   6.58 (6.14) Peptide Signal:   %s   cut: 25 range:25-318
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSSHSHLYGTCFIMFLLLSKLAFAQLSSNHYDNTCPKALSTIKSIVHNAVVKEHRMGASLLRLHFHDCFVNQGCDASVLLDDTSSFTGEKSANANANSIRGFEAIDSVKSKV*SLCPGVV
SCADILAVAARDSVVAFGGPSWTVQLGRRDSTTASSSAVNTNIPSPLMDLNDLISNFAKKGFSAKEMVALSGAHTIGQARCLLFRERIYNETNIDSEFATSLKSNCPSSGGDDNLSQLDA
TSSVLFDNGYFQDLVNNKGVFHSDQQLFNGGSTDSQVTTYSTIIGTFYADFANAMVKMGNLSPLTGTDGQICTNCRKIN

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from phytozome(Gaps in frame which are completed).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTCGTCTCACTCACATCTTTATGGAACTTGCTTCATCATGTTTTTGTTGTTATCTAAACTGGCCTTTGCACAATTATCCTCAAATCACTATGATAATACTTGCCCAAAAGCCCTATCTAC
CATCAAGTCTATAGTACACAATGCAGTGGTAAAGGAGCATCGAATGGGAGCTTCTTTGCTTCGTCTCCATTTCCACGATTGTTTTGTTAATGCACGTTCTATCTCTCCCTCTCTCTTTCT
TTTCACTTTCAACGAAAGCGATTTGCAATTGCAAACTTGCATGCATGCATCCGCCCAAAACGCATAATAGAGTTTCATTTACGCATTATCATAGTAATGCTTGAGTGACAAACTTTCTTT
GTATATGTTATTTAATTTGTACATAGTGAGGTGCTAAAACAGTATTAATTAGTAGAATCATGACTCAAAATAATCTCTTTTCATTAGCTATTTTTGTTAAGGTAAATGCTCCTTATAATT
TACATCAAGTCCAAAATATTTTCAAAATTACAATTTTCCAAAAAGTCCAGTTGTCTGTTTGTTTATGTTAAAATTTACTTAATTTTCATCTATTTTTCACCTATTGTATGTTAGATTTAT
TTGAATTTTAAGTTATATATCATGCGAAAATACTACTTTACTCTTAAAAATTAAATTTGATTGCTACGATAGTAACAACATAGGTGTTTTAGATAATTTTATAAATATAGGGATGAACTG
AATAATTAGCTCAAACCACATATAAAACTGAAGGAAATTTATTATTAATACATTTTTGTTATCAATATGGTTATCTTACAATTTGATTAGTTGGGCATATGATAGTGTATTATGGTAACT
TTTATTTTTAATTAAATTTCGTTTATGCCTCAATTTGCAGGGGGTTGTGATGCATCAGTTCTATTAGATGACACTTCAAGTTTTACTGGTGAGAAATCAGCCAACGCCAATGCGAATTCA
ATACGAGGCTTTGAAGCGATCGATTCAGTTAAATCTAAAGTTTAGAGTCTCTGCCCTGGTGTTGTTTCTTGCGCAGACATCTTAGCTGTTGCTGCTCGAGATTCCGTTGTTGCTGTAAGT
GAAGCGAAAATTGCATTAATGACTACTTGAGATTATTGTCACCTAATAGTAATAACTGCAGGCCCAAAATCTTAGCACTTTTCTTTATTATTATTGTTGGATTCTTATCATCGACTTAGG
CTTAATTTTGGTTAAACGGTTTCTCTAACACAATTAAATTCAATTCTCTCAACTTATAAGCTCATTCAATTTCTTGATTCACTTTTAAGCTCTTGTCTTTTGGTACATCCAAAACCTTTT
TCTTTTTCCTTTTTTTTCCCCTAATCTTTAGCCTACAAACATTTCACATAGGGAAGCATATGAAACCCTATCTTATCAGCTTAAACTTTTGGCCAAGCAGTTATTATTAGTATAATGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATATTCATTTTTGTTCTGTTCGCGGGGGGCCTTCATGGACAGTTCAATTAGGTAGAAGAGATTCGACAACGGCAAGTTCCAGTGC
AGTAAATACTAATATTCCATCCCCTCTTATGGATCTTAATGACCTTATTTCTAACTTTGCAAAGAAAGGATTCAGTGCTAAAGAAATGGTGGCCCTCTCAGGTAATAACATTATTATTAG
ATTAATAAACTTAGACCTAGTGCTGATCTAAGCTGCACTAATCTTTCAAAATCATATCTCATCACCTGCACGACCAAAAAAGGCCTCTAGTATCAGCGGATCTACGAGTGCGTTAATAAC
ATTGTACGCATGGTAGAATTTAGTTACATGTATATACCTTGTAGAATGATCAACATAAGATTAGATAAATACTGATATGTATTGAAGATATTATCTCACATCAACTGAGAATAATTACTA
GGTTAATAATATAAGTGAGGCAATTCTCAATTCTTAAGCTAGTTTTTGAGTTTAAGTTAGCTCATGGGTTTTTTATATACTATTAGAGTTAGAGTCACCTACGAGTGGGCTCACTCTACT
TTATCACGTGACAAGGACTAGCTAGACAAAAGAATCGGTACTGATGAGAATATCCCAAGTCAACTATTAACACAACTAGCTAGATAGCAGCCATATTCTTTAATTTCTATAATTCTTATT
TCGTGTATGATTAATTATATATCAAAATTCTGGTCGTATACAGGAGCGCTCACACAATAGGACAAGCTAGGTGCTTATTGTTTCGAGAAAGAATCTACAATGAAACAAACATTGATTCAG
AATTTGCAACATCTTTAAAATCAAACTGTCCAAGTTCAGGCGGCGATGACAACCTTTCTCAATTAGATGCCACCAGCTCTGTTCTATTTGACAATGGCTATTTCCAGGACTTGGTGAATA
ACAAAGGTGTCTTTCATTCAGACCAGCAGGNNCTCTTCAATGGCGGCTCAACTGACTCTCAAGTCACCACTTACAGCACCATCATTGGAACGTTTTATGCAGATTTCGCCAATGCAATGG
TCAAAATGGGGAACCTTAGCCCACTGACGGGGACTGATGGGCAGATTTGCACCAACTGCCGCAAAATAAAC

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTCGTCTCACTCACATCTTTATGGAACTTGCTTCATCATGTTTTTGTTGTTATCTAAACTGGCCTTTGCACAATTATCCTCAAATCACTATGATAATACTTGCCCAAAAGCCCTATCTAC
CATCAAGTCTATAGTACACAATGCAGTGGTAAAGGAGCATCGAATGGGAGCTTCTTTGCTTCGTCTCCATTTCCACGATTGTTTTGTTAATGCGGGTTGTGATGCATCAGTTCTATTAGA
TGACACTTCAAGTTTTACTGGTGAGAAATCAGCCAACGCCAATGCGAATTCAATACGAGGCTTTGAAGCGATCGATTCAGTTAAATCTAAAGTTTAGAGTCTCTGCCCTGGTGTTGTTTC
TTGCGCAGACATCTTAGCTGTTGCTGCTCGAGATTCCGTTGTTGCTGTCGGGGGGCCTTCATGGACAGTTCAATTAGGTAGAAGAGATTCGACAACGGCAAGTTCCAGTGCAGTAAATAC
TAATATTCCATCCCCTCTTATGGATCTTAATGACCTTATTTCTAACTTTGCAAAGAAAGGATTCAGTGCTAAAGAAATGGTGGCCCTCTCAGGTGCTCACACAATAGGACAAGCTAGGTG
CTTATTGTTTCGAGAAAGAATCTACAATGAAACAAACATTGATTCAGAATTTGCAACATCTTTAAAATCAAACTGTCCAAGTTCAGGCGGCGATGACAACCTTTCTCAATTAGATGCCAC
CAGCTCTGTTCTATTTGACAATGGCTATTTCCAGGACTTGGTGAATAACAAAGGTGTCTTTCATTCAGACCAGCAGGNNCTCTTCAATGGCGGCTCAACTGACTCTCAAGTCACCACTTA
CAGCACCATCATTGGAACGTTTTATGCAGATTTCGCCAATGCAATGGTCAAAATGGGGAACCTTAGCCCACTGACGGGGACTGATGGGCAGATTTGCACCAACTGCCGCAAAATAAAC

Retrieve as FASTA