View Redoxidase 8732

Entry information : CpapAPx04 (evm.model.supercontig_64.103)

Entry ID	8732
Creation	2011-06-28 (Qiang Li)
Last sequence changes	2011-12-01 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2012-01-05 (Qiang LI)

Peroxidase information: CpapAPx04 (evm.model.supercontig_64.103)

Name (synonym)

CpapAPx04 (evm.model.supercontig_64.103)

Class

Ascorbate peroxidase [Orthogroup: APx002]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Caricaceae Carica

Organism

Carica papaya [TaxId: 3649 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CpapAPx04 start..stop	S start..stop
StAPx07	252	2.18e-85	1..187	1..203
LeAPx07	246	2.88e-82	1..187	1..203
GmAPx08	243	6.74e-81	40..187	36..203
CpapAPx05	236	1.16e-79	65..187	1..144

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8732' 'complement(join(723440..723533,723682..723724,723796..723916,724357..724497,724652..724819))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	724652..724819	166	N° 2	724357..724497	139	N° 3	723796..723916	119	N° 4	723682..723724	41
N° 5	723440..723533	92
complement(join(723440..723533,723682..723724,723796..723916,724357..724497,7246 52..724819))

Literature and cross-references CpapAPx04 (evm.model.supercontig_64.103)

DNA ref.	Phytozome 12: supercontig_64 (724819..723440)

Protein sequence: CpapAPx04 (evm.model.supercontig_64.103)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	188 (293)
PWM (Da):	20012.44 (30269.0)
PI (pH):	10.39 (8.21)	Peptide Signal:	cut: 24 range:24-316

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASSLGTVASSRLLSSSKARLCLSSSSSSPSISTLSLSSLRCLSS
SPLISRLSLNQRSFVNVSNGGFSTVATAKSAASDPDQLKSAKEDIKELLRTKFCHPILVRLGWHDAGTYNKNIEEWPQRGGANGSLRFEVELKHAANAGLVNALKLIQPIKDKRLGVQKSPMKYGRVDASG
PDQCPEEGRLPG

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction from phytozome (A big gap in frame due to the NNNNNNNNN in DNA sequence).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGTCTTCTCTTGGCACCGTCGCTTCATCACGCTTACTCTCCTCCTCTAAAGCCAGACTCTGTCTCTCCTCCTCCTCCTCCTCCCCGTCTATATCTACACTCTCTCTTTCGTCTCTC
AGATGTCTCTCTTCCTCCCCTCTCATTTCTCGTCTCTCTCTCAATCAGGTTTCACCTCTCATTTCTATTTTTCTATCTCCCTATCTATGTTTATATTTGTGATATTTGATTGTTGTGATC
GTTTCCTTCTAGAATACGTGGTTATGGGTTTATTCATTTGCTTTGCTTGCTTATTTGTATTTATTTTTGGTGATTTTTGAAGAGAGATCTTTTGTTAACGTGAGCAATGGAGGTTTTAGC
ACTGTGGCTACTGCGAAATCTGCAGCTTCTGATCCCGATCAGTTGAAGAGTGCCAAGGAAGACATCAAAGAGCTACTCAGGACTAAGTTTTGCCATCCTATCCTGGTATGATTTTAATTT
GGTTTACATACAGTCTACAATAATACACAAACATACTACATGTGCATGTGCTTTTTAGGTGAATTGAACCAGTAATTGATTCGCGAGGTTAATAATTTTGCATTTGATTATTTTCTTTAT
AATCTTGTTCATGGGATTTGCCAGCTTTATATTCTTAATTTTCTTGTTTAGTTTAACGCTCTTCGGAATTGCATAACAATTCTAATCTTCGAGTACTTTTCATTCTTTCCTTACTTCTTC
TTGGAAAAAAAAAAAAAAAACCGAAGACCAGCTCCTTGATAACAGTACTTTGTTTTCTTAGTTTCCTTACTGTAATATGTTGGACTTATCTTTTCCTGCTGTTGACTGGAAGATTCGAGG
AGTAGATTGCAGGAGCTTGTTAAGAACTGAACTGTTTTATCATCTGAAATAATTTTGTACCACAGGTGTTCGCCTGGGCTGGCATGATGCCGGTACATATAACAAAAACATTGAGGAGTG
GCCACAGAGGGGTGGAGCTAATGGGAGCCTTAGATTTGAAGTTGAACTAAAGCATGCAGCCAATGCCGGTAATTTTTTGACTTTGATATATTATGTGGGTTGGCTGATCCTGCTCTGACT
CGGTAGCTGGCTTTTTCAGGTGTCTTGTGAATGCATTAAAACTAATTCAGCCCATCAAAGATAAGTACTCTGGTGTCACATACGCAGACTTATTTCAGTTGGCCAGTGCCACTGCAGTGG
AGGTTCTTATTGTTCCAATTCTTAGATATATATCTGTAGCATTAACTTCTTTTGAACAATTAAAGATCTACTGGTGAACCTTGTTTATTCAGGAGAGGCTGGGGGTCCAAAAATCCCCCA
TGAAATATGGAAGAGTGGATGCATCGGGGCCTGATCAGTGCCCTGAAGAAGGGAGACTTCCTGGTTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA