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Entry information : SbPrx60 (Sobic.003G151900.1 [2.1] / Sb03g013190 [1.4])
Entry ID 878
Creation 2008-10-20 (Christophe Dunand)
Last sequence changes 2008-10-20 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx60 (Sobic.003G151900.1 [2.1] / Sb03g013190 [1.4])
Name (synonym) SbPrx60 (Sobic.003G151900.1 [2.1] / Sb03g013190 [1.4])
Class Class III peroxidase    [Orthogroup: Prx126]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx60
start..stop		 S start..stop
ZmPrx01 592 0 3..370 2..367
SiPrx05 568 0 30..371 26..359
TaPrx31-1D 498 2.43e-178 18..371 9..348
HvPrx10 494 3.73e-177 17..341 8..330
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '878' 'join(16095935..16096180,16098268..16098708,16098838..16099266)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 16095935..16096180 244 N° 2 16098268..16098708 439 N° 3 16098838..16099266 427  
join(16095935..16096180,16098268..16098708,16098838..16099266)


exon

Literature and cross-references SbPrx60 (Sobic.003G151900.1 [2.1] / Sb03g013190 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_3 (16095935..16099266)
Protein sequence: SbPrx60 (Sobic.003G151900.1 [2.1] / Sb03g013190 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   371
PWM (Da):   %s   38532.23 Transmb domain:   %s   i13-35o
PI (pH):   %s   6.12
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAKESKLTTTAGVAQRLAVVAACVLCLLPAMAHAQLRVGFYDTSCPNAEALVRQAVAAAFAKDAGIAAGLIRLHFHDCFVRGCDASVLLTVNPGGGQTERDAVPNNPSLRGFDVIDAAK
AAVEQSCPGTVSCADIVAFAARDSISLTGSVSYQVPAGRRDGRVSNSSDTVDLPAPSSTAQTLIDKFAAKDLTLEDMVVLSGAHTVGRSFCVSFFQRVWNTSTNPATAIVDAGLSSSYAA
LLRALCPSNTTQTTPITTAMDPGTPNVLDNNYYKLLPRGMGLFFSDNQLRVNTQMAALVSSFAANETLWKEKFAAAMVKMGRIQVQTGACGEVRLNCGVVNPSSYSSPSTVVELGSSAPA
AVDEEGYAAAS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, introns 1 and 3') and 2 ESTs. Containing IntR (3').
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGCTAAGGAAAGCAAGCTGACGACGACGGCCGGAGTGGCCCAGCGGCTGGCCGTCGTCGCCGCGTGCGTACTATGCCTGCTGCCGGCGATGGCCCACGCGCAGCTCCGGGTGGGA
TTCTACGACACCAGCTGCCCTAACGCCGAGGCGCTCGTCCGCCAGGCCGTCGCGGCTGCCTTCGCCAAGGACGCCGGCATCGCCGCCGGCCTCATCCGCCTCCATTTCCACGACTGCTTT
GTCAGGGGGTACGTAACAAAGCTTAATTTACTGCCTCGCTTTTCTTTTGATTTACTTAATTTATTACCACCTGCAGCTTTATTTAGGTAGTGGACGTAGTACATGAAAAGACGAGCTGAA
ACGCAAAGGTGCCCATGCTGTAATGGCAATGCTGAAAAGACGCAAGAAATATATAGCGCGAAATAAAATGAATCAAGAAAAACTTACTCAAACCACAGTTCTTGTGACTTGTCAACACAT
GTATGCCTTTTAATTCTGCCTTCATCCAATGACTAGCTAGATCTCACTTCTATATGGCACACAAATATTATATATGTTTCTGTTCCACGATTGATGCGTTGAGTAATATCAATTGATCTG
TCCCCACTCGCTAATCACAACATGCATCAGAATATGAGATATATATTGCTGAAGCATATCTAACAAAAATCTCACGACATTATCAATTTGCCTTTTGTGCTTATCCTAGTTACTTTCCAT
TGTAAACCCTCCTAGCTACCAGTACAAACTTACAAAGATTCACCAACTTTTAATTTGCGTGGCCTGGAATCCAAAATTTCTAAATATAAAATATTTGTTATGAACATACATTTATTTGTA
TAATACGATACCTGGCTGCACTTTTACAGAAATTTGTTGGTACCATACTACCATAGTATATTGGAAAGCAAAAAAAAAAAAAAAAGCGAAAGTTGTTTTCTCAAGACAAAGAGACAAAGT
GTCCAAAGCAAAAGCCCAAAAACCAAGTGAACGCATAGATACATTTGCTCTGCTGCTTTCTTTCTTGGAAGGCAACGCATATTCGCTGCTTGCAACTGTTGCCAAGAATAAGCTTTTTAT
CTTTGAGCACCAAGAATAACCTTTTATGAGACGAACCGACAATCTCACTCTTTATTTTTTTTATTATCTTCCGAGCATAAACATTCTTGGATGATAGTATCAAAATTAAGACATCCAAAC
TAAAGGACAGAAGCATAAACATCCATGTTTCCTAGCTAGCTGGTACCAGTATATTGTTTATTGAAGTAGCAAATGCATGGATAGTAGGAGTATTGCGCTGCAAACCTCAAGACACTTGTA
GTAGGAAAAAATATGAAACATTTTATAACTCTATCGCTTTATACACTATGTGAAATTGAATGTTAAATTTGTACTTCATCTGTTCTAAATTATGTCTTTTCTAGATATGTTTTTGTTATA
TGTCTAGACGTAGTGTATACATTGGAATGCTTGGAAGCAGGTAACTGATGCTTCAAGATCAAGTATCGAAGCAGAATCCAGGATTTCTTTATCCTTAACATTGAGAGCGGTAACACTTGC
ATGATTATAGAGAAGATCGCCCCCCCATAATACTTGTTTCAAATATAGAGAACTTTCTATCTGACTAGGTACATTGCTGCTATATACTTAAAAAAACAAAAATGACTTATAGTTTAAAAT
AGATGAAGTACTTTGGAAGATATCAAGCAGAAACTATTGAAAAACAACATTTCAAAGACATTAATATTTTCCTTATATACCGTGTTTATTTGTGACCTAAGGGGATTGTGGGTTAAAAAG
GAAGGAAAATGACCATATCACAAAAATAGCTTTAGTTTTGTTATAAGTTAATAGAAAAATGTATAAACATCTATAAATTATAAACAAGATTCATTCAATACACCATGAAATCTATTTGAT
AGCATGTTTATACATATTTAATATATATTGTAGATCTTAATATATTTTCTATAAACTTGATTAAAGTTACAAGGTTGACTTAAAACAAAACTAAAATGATTCATGATTTGAAATGAATTG
AGTAAAATTCAATATCATTCTTAGGCAAACTATCATAAATTTGACAAAATATAAAAAAGTATTAACATCTATAAGTATGCTATATGAAAATATATGCCAAGGAATCTATGTAATGATGCT
TAAGTGATATCTTAGATAGTATTACTTTTTCCCTAAAATTTTATATTAGCTAATCTTGTGATTATATAATAGTTTAATTTAGAATAGATAAACTAAAAGTCTTTAAGTGGATTTGTTTGG
TGCCAATCAACGAGGTATTCTTGACTGACCTTCGTCTTCCGACACGACTGTGCAGGGCTGTGATGCCTCCGTCCTCCTCACCGTGAACCCTGGCGGCGGCCAGACCGAGCGTGACGCCGT
GCCAAACAACCCGAGCCTCCGCGGCTTCGACGTGATCGACGCCGCCAAGGCCGCCGTTGAGCAGAGCTGCCCGGGCACCGTGTCGTGCGCCGACATCGTGGCCTTCGCCGCCCGCGACAG
CATCAGCCTCACCGGGAGCGTCTCGTACCAGGTCCCCGCCGGCCGGCGCGACGGCCGCGTGTCCAACTCGTCGGACACCGTCGACCTGCCCGCGCCCAGCTCCACAGCGCAGACCCTCAT
CGACAAGTTCGCGGCCAAGGACCTCACCTTGGAGGACATGGTGGTCCTCTCCGGCGCCCACACCGTCGGCCGCTCCTTCTGCGTCTCCTTCTTCCAGCGCGTCTGGAACACAAGCACGAA
CCCCGCTACGGCAATCTCGTACGTGTACTACGCCGACATGGCTGACGACGACGATGCATCGCCACCGGCCAATTCACCACTCACGCTCACGCATGACGACGACGCATATATGTGACACGT
GCCGTGTATGTGTGCGTGTGTGCGCAGGTGGACGCGGGGCTGAGCTCGTCGTACGCGGCGCTGCTACGCGCGCTGTGCCCGTCGAACACGACGCAGACGACGCCGATCACGACGGCCATG
GATCCCGGGACGCCCAACGTGCTGGACAACAACTACTACAAGCTCCTGCCACGCGGCATGGGGCTCTTCTTCTCCGACAACCAGCTGCGCGTGAACACGCAGATGGCCGCGCTGGTGAGC
AGCTTCGCGGCGAACGAGACGCTGTGGAAGGAGAAATTCGCGGCGGCGATGGTGAAGATGGGCCGCATCCAGGTGCAGACGGGGGCGTGCGGGGAGGTCCGTCTCAACTGCGGCGTCGTC
AACCCGAGTTCATACTCGTCGCCGTCGACGGTGGTGGAGCTGGGTTCGAGCGCGCCAGCCGCCGTCGATGAAGAGGGCTACGCCGCCGCGAGCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTGCTAAGGAAAGCAAGCTGACGACGACGGCCGGAGTGGCCCAGCGGCTGGCCGTCGTCGCCGCGTGCGTACTATGCCTGCTGCCGGCGATGGCCCACGCGCAGCTCCGGGTGGGA
TTCTACGACACCAGCTGCCCTAACGCCGAGGCGCTCGTCCGCCAGGCCGTCGCGGCTGCCTTCGCCAAGGACGCCGGCATCGCCGCCGGCCTCATCCGCCTCCATTTCCACGACTGCTTT
GTCAGGGGCTGTGATGCCTCCGTCCTCCTCACCGTGAACCCTGGCGGCGGCCAGACCGAGCGTGACGCCGTGCCAAACAACCCGAGCCTCCGCGGCTTCGACGTGATCGACGCCGCCAAG
GCCGCCGTTGAGCAGAGCTGCCCGGGCACCGTGTCGTGCGCCGACATCGTGGCCTTCGCCGCCCGCGACAGCATCAGCCTCACCGGGAGCGTCTCGTACCAGGTCCCCGCCGGCCGGCGC
GACGGCCGCGTGTCCAACTCGTCGGACACCGTCGACCTGCCCGCGCCCAGCTCCACAGCGCAGACCCTCATCGACAAGTTCGCGGCCAAGGACCTCACCTTGGAGGACATGGTGGTCCTC
TCCGGCGCCCACACCGTCGGCCGCTCCTTCTGCGTCTCCTTCTTCCAGCGCGTCTGGAACACAAGCACGAACCCCGCTACGGCAATCGTGGACGCGGGGCTGAGCTCGTCGTACGCGGCG
CTGCTACGCGCGCTGTGCCCGTCGAACACGACGCAGACGACGCCGATCACGACGGCCATGGATCCCGGGACGCCCAACGTGCTGGACAACAACTACTACAAGCTCCTGCCACGCGGCATG
GGGCTCTTCTTCTCCGACAACCAGCTGCGCGTGAACACGCAGATGGCCGCGCTGGTGAGCAGCTTCGCGGCGAACGAGACGCTGTGGAAGGAGAAATTCGCGGCGGCGATGGTGAAGATG
GGCCGCATCCAGGTGCAGACGGGGGCGTGCGGGGAGGTCCGTCTCAACTGCGGCGTCGTCAACCCGAGTTCATACTCGTCGCCGTCGACGGTGGTGGAGCTGGGTTCGAGCGCGCCAGCC
GCCGTCGATGAAGAGGGCTACGCCGCCGCGAGCTAA

Retrieve as FASTA