View Redoxidase 8864

Entry information : CsPrx03 (orange1.1g036121m/Cs1g15180)

Entry ID	8864
Creation	2011-07-01 (Qiang Li)
Last sequence changes	2012-01-04 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2017-12-14 (Qiang Li)

Peroxidase information: CsPrx03 (orange1.1g036121m/Cs1g15180)

Name (synonym)

CsPrx03 (orange1.1g036121m/Cs1g15180)

Class

Class III peroxidase [Orthogroup: Prx006]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Rutaceae Citrus

Organism

Citrus sinensis [TaxId: 2711 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CsPrx03 start..stop	S start..stop
CclPrx58	437	5.99e-157	1..241	10..248
NtPrx96-1B	271	1.89e-91	19..239	35..253
NtPrx96-1A	267	9.42e-90	1..239	8..253
PtaPrx97	230	1.87e-75	14..239	27..251

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8864' 'complement(join(186267..186431,186495..186539,186727..186858,186957..187145,187236..187427))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	187236..187427	190	N° 2	186957..187145	187	N° 3	186727..186858	130	N° 4	186495..186539	43
N° 5	186267..186431	163
complement(join(186267..186431,186495..186539,186727..186858,186957..187145,1872 36..187427))

Literature and cross-references CsPrx03 (orange1.1g036121m/Cs1g15180)

DNA ref.	Citrus sinensis Annotation Project: chr1 (18408969..18412032) Phytozome 12: scaffold00096 (187427..186267)

Protein sequence: CsPrx03 (orange1.1g036121m/Cs1g15180)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	241 (224)
PWM (Da):	26524.14 (24802.3)	Transmb domain:	i2-24o
PI (pH):	6.23 (6.24)	Peptide Signal:	cut: 18 range:18-241

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MVLILWGSCCLFAGGNGVLVLHFYKKSCPSAEMPVKEEMKRKMLS
DISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNFGIRKVDIINEIKSSLETICPETVSCADFIQLAARDAVYLSGGPYIEVLTGRRDAVSGKKERADNQLPTYDISVSEFTGFSFRRDNKHAVWSQIGRW
HGHTLGVSHCRNFQNRLWPIKDDTLSLAFSGMLEMICSNPTLSDISFAQNDATTLYL

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction from phytozome (3' end is missing due to 'NNNNN' in DNA).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTGTTGATTTTGTGGGGTTCTTGCTGCTTGTTTGCAGGTGGAAATGGGGTACTTGTGCTTCACTTTTATAAAAAGAGTTGCCCTAGTGCAGAAATGCCAGTAAAAGAGGAGATGAAA
AGAAAAATGCTGAGTGATATTTCTTCTGCTGCTGCCATTCTTAGACTGGATTTTCATGATTGTCAAGTCGATGTAAATTTTTTTTTTCTTGTCTCACAAGTAATATATTTATATGATCTT
TGGTTTCCAAGCTTTGCTTATGTTTGTTACATTTTACTACAGGGGGTTGTGATGGATCAATTCTTCTCGGAAACTCAAACGGGATTACAACAGAAACATTATCGGACAAGAATTTCGGAA
TCCGGAAGGTTGATATTATCAATGAGATAAAGAGTTCCCTTGAAACAATTTGTCCTGAAACAGTTTCTTGTGCTGATTTTATCCAGTTAGCTGCAAGGGATGCTGTATACCTGGTGAGCT
ACATCAGTTTCTTGAAAGACAAGGAAACTTTGAAAAAAATTCTATGAACTTATATTTGTACTCAAGAAACTTTTTTGTTTCCACTTTCCAGTCTCTGGAGGGCCATACATAGAGGTTTTA
ACTGGAAGAAGAGATGCCGTTTCGGGAAAGAAGGAGAGAGCCGATAATCAGCTTCCGACTTACGATATTTCTGTCAGCGAATTCACTGGGTTTTCCTTCAGAAGAACATTAGTTTGGAAG
ATGGAGTTGCACTCATGGGTACACAACTTGTACTAAAAATAAAATTCACCTTTCTTCCAAATGCTAATAATGTGTGCATTTTAAAAAAAATTTATTTCCCCTTTTCGCAATACGTTGTAC
ATTGGATTGTTGGTCCAGATTTTAAAAGATGCAGAGGTTTATGAGAGAGACTGAGACAATAAACATGCAGTATGGAGCCAAATTGGAAGATGGCATGGCCATCGGATATGTTATGTTAAT
ATGTTACATTTTTCTAACTCTTGTTATGTGTTTCCAGGATCTCACACACTCTAGGCGTAAGCCATTGCCGGAACTTCCAAAACAGGCTGTGGCCGATAAAGGATGATACATTGTCACTAG
CATTTTCAGGAATGCTGGAGATGATTTGCAGCAATCCTACGTTATCTGATATATCATTTGCCCAAAATGATGCTACTACTTTATATTTG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA