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Entry information : SbPrx14 (Sobic.001G328100.1[2.1]Sb01g031740[1.4])
Entry ID 891
Creation 2008-10-19 (Christophe Dunand)
Last sequence changes 2008-10-19 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-01 (Messaoudi)
Peroxidase information: SbPrx14 (Sobic.001G328100.1[2.1]Sb01g031740[1.4])
Name (synonym) SbPrx14 (Sobic.001G328100.1[2.1]Sb01g031740[1.4])
Class Class III peroxidase    [Orthogroup: Prx136]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer Dark growth
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx14
start..stop		 S start..stop
ZmPrx41 570 0 1..344 3..349
ZmPrx55 564 0 1..344 3..342
SiPrx157 543 0 45..344 32..330
OsPrx4849 491 2.33e-176 9..344 4..335
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '891' 'complement(join(54426059..54426456,54428202..54428367,54428754..54428945,54429209..54429487))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 54429209..54429487 277 N° 2 54428754..54428945 190 N° 3 54428202..54428367 164 N° 4 54426059..54426456 396
complement(join(54426059..54426456,54428202..54428367,54428754..54428945,5442920 9..54429487))


exon

Literature and cross-references SbPrx14 (Sobic.001G328100.1[2.1]Sb01g031740[1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_1 (54429487..54426059)
EST ref. GenBank:   BE355525.1 [3' end]
Protein sequence: SbPrx14 (Sobic.001G328100.1[2.1]Sb01g031740[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   344 (299)
PWM (Da):   %s   35487.54 (30890.1)  
PI (pH):   %s   4.81 (4.49) Peptide Signal:   %s   cut: 46 range:46-344
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTPLDCDMPPAASCKKRLSPSRPLPNRCLLILIVALAAAAAVASAQLSSEDYYDASCPAALFTIRTAVSTAVLLDRRMGASLLRLHFHDCFVQGCDASVLLDDTASFTGEKGAGPNAGSLRGFDVIDNIKMLLELLCPQTVSCADILAVAARDSVAQLGGPSWSVPLGRRDATTASASLANSDLPGPTSNLNGLLNAFSNKGLSSTDMVALSG
AHTVGRAQCKNIRSRIYNDTDIDATYAASLRASCPAQAGGASDGALEPLDDATPDAFDNAYFGNLLSQRGLLHSDQALFGGGGATDGLVSTYASSADQWGSDFAAAMVKMGNISPLTGTD
GEIRVNCRRVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 3 introns) and 3 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACACCCCTCGACTGCGACATGCCTCCTGCAGCTTCCTGCAAGAAGCGCCTCTCGCCGTCGCGGCCTCTCCCTAACCGCTGCTTGCTGATCTTGATCGTTGCACTGGCGGCCGCCGCC
GCGGTGGCCAGCGCGCAGCTGTCGTCGGAGGACTACTACGACGCCTCCTGCCCCGCCGCCCTCTTCACCATCCGGACCGCCGTCTCGACGGCCGTGCTCCTGGACCGCCGCATGGGGGCC
TCCCTTCTCCGCCTCCACTTCCACGACTGCTTCGTGCAGGTAATTAAGTCAGCGATCTCCCATATATCTGTCACCGGTTCGTCGTCTCTCCTGCGGTCGTCCTAGCTGCTAGATGAAGTT
CATGATAAGTGTGGATTACTAGCTAGTAGCTAGCTGAGTGATCAGAAATCTCGGCCTTGTTCGTTTGAGCTTTATCTGTTGAATCTCACAAAAAAATCAACAAACAGTAGTACTTTCAAC
TATTGTTGTTCATCTCTACGGCTTTGTTTGTATATGCACGTACGTACGGCCGGGCGGCACAGGGGGTTGTGACGCGTCGGTGCTGCTAGACGACACGGCGAGCTTCACCGGCGAGAAGGG
GGCGGGGCCGAACGCGGGGTCGCTTCGCGGCTTCGACGTGATCGACAACATCAAGATGCTGCTGGAGCTGCTGTGCCCGCAGACCGTCTCCTGCGCCGACATCCTTGCCGTCGCCGCCCG
CGACTCCGTTGCACAAGTAAGCCACACCTCTCGATGGATCCATCAACTGTGTAAATGAAGGCACACACGCACACCTCTGTAATTTGGCCTACACTGTTTTACATTATTCCACTGAATTGA
TTTAGATAAATTCTGTTTTACTTGCACATAATTAATTGATGAGTCGGAAAATATGATCGAGCATGAATCTGTCTCAGCAGCCTGTATATAACAGAACTGAACAGACACAGATGATGCTCT
CCGATCGATCGACCCACTTTATTTCCCACACGTCAAAAGTAGAAATATGAAATGCATGATTAGTTTATATCATATCATAGCAAAGGTCGAGCAGGCTAGCTTAAAAGTGATTCTCTGAAA
AGAGAGGACGAAAAAGTTGATTTGATCAGCGTGTTGATGCAGCTCTGGGAGGACCATCGTGGTCGGTTCCCTTGGGCAGGAGGGACGCCACCACGGCGAGCGCGTCCCTGGCCAACAGCG
ACCTGCCCGGACCTACCAGCAACCTCAACGGCCTTCTCAACGCTTTCTCCAACAAGGGTTTGAGCAGCACCGACATGGTTGCCCTCTCAGGTACTTCACATGCATGCATGCACGAGCGAG
GTAGCTAGGATCGATGATGCATCATTGACACATGTTACATGACTGAAGATTGAAATCGGGCCGACCTCCTTTTTCTCTGCTTCATGCAATGCATAGTACATATATAGCTAGATTCATTCG
CAGCAGGCAGACTAAGATGGCGGATGGCACGTCCCATCATAGATCTTTGCTTTGCTTCACACTGCATTCGATCGGCAGTGCAGCTGATCAGCCACAGCTAGCTAGCTCGAGCACATGGTA
TGTCCTGCTAGTAAAAATAAACTAAAATGCATGAACAGGCAATTGATATCGACGCGGCACCCATTCGTCATTCCAGGCCAGGCACCGTGCGACCAAATGACTATTCTGCAGACGTACGTC
GATATAATATCGAGGAAGAATGAAATTATTTCTTCATGTTTGAATTCAAATTAAGGTAGTTATGCCTTATATATACTAGGACATAGTGAGTAGCTAGCTACTACGCACTGTGTATGTACT
CTTAGCACCTGAACGGCTATATAGTCTTGTGCACTAGTGAGGCCTTATTTAGTCCCGAAAAGATTTCGGATTTCGGCACTGTAGCATTTTCGTTTTTATTTGACAAATATTATCCAATCA
TGGACTAACAAGTCTCAAAAGATTCATCTCGTGATTTACAGGCAAACTGTGCAATTAGTTTTTATTTTCATCTATATCTAATGCTTTATGCATGTGCTCTAAGATTTGATGTGACGGGGA
ATCTTAAAAAAAATTAGTTTTTAGAATGAACTAAACAAGGCATGAATAACGGAGTCAGAATACAATTGTTCCATCTAAAAACAACTCTCAACGTATCAAGTACGTCCCGCTAGGTACGTG
CACACGCACGCATGAATACGAGGCCTTGTTTAGTTCACCTTAAAAATAAATTTTTTTCAAGATTTTCCGTCACATCGAATCTTGCAGCACATGCATGACGAACTAAATATAGACGAAAAT
AAAACTAATTGCATACTGTAAATTGTGAGATTAATCTTTTAAGTCTAGTTACTTTATAATTAGATAATATTTATCAAATAAAACAAAAATGCTATAATCATGAAAATAAAAAAAAATTCG
AAACTAAACAAGGCCCCAGTATTTTGTGCCCTGTTCTGTTTTCCTTTACTCGGTAGCCATTGTCTGCTTCACATCTCGACTTCATATGATTCCGCATGCAGTGCACATCATCTATATGCA
TATTTAATATATGCATACATCGTACTAGCAAGGAAAACGCTAGCTACATGCATGATGCATCATTGTTCGTTTGCATGCGCGTATCAGTTCAACATGGTGATGGACGACGACACGACGTCC
TGTTGGTCTCTGTTCAAGCTAAAGTCACCACCTTTTTGCTCGCAACCTGACAACATTTGGACGCGTAGGCGTCACCTACCGAGTACTACGTGCATGATCATCGATCAGACGATCACAGCA
TCACGCGATCGACAGACCAACTACCAGCTGCTTCTACCACCATGCCTGCAGCAATCATGCATGCATGCATGCGACAGCAGAGCAAGATTTCCATCTCCATGCATGATTGCGTTGCGTGTC
TCCACCGCCCACGGAGCCATTTTTTCCCTCTGTCATCCATCAGATTTGCATTGAAACAAACATATATCTAAATATAGTTTTGTATGTATGTTTGCACATTTTTCAATACGGATCTAATAA
GGCAAAATAAAATTTACCCTCGTCACGCGTTGCAGGTGTGCCCACACCGTCGGCCGGGCGCAGTGCAAGAACATCCGGTCGCGGATCTACAACGACACCGACATTGACGCCACCTACGCG
GCGTCGCTGCGGGCAAGCTGCCCCGCGCAGGCCGGCGGCGCCAGCGACGGCGCGCTCGAGCCGCTCGACGACGCCACGCCGGACGCCTTCGACAACGCCTACTTCGGCAACCTGCTCTCC
CAGCGCGGCCTGCTCCACTCCGACCAGGCGCTCTTCGGCGGCGGCGGCGCGACGGACGGCCTGGTCAGCACCTACGCGTCCAGCGCCGACCAGTGGGGGAGCGACTTCGCCGCGGCCATG
GTCAAGATGGGCAACATTAGCCCGCTCACCGGCACCGACGGCGAGATCAGGGTCAACTGCCGGAGAGTGAATTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACACCCCTCGACTGCGACATGCCTCCTGCAGCTTCCTGCAAGAAGCGCCTCTCGCCGTCGCGGCCTCTCCCTAACCGCTGCTTGCTGATCTTGATCGTTGCACTGGCGGCCGCCGCC
GCGGTGGCCAGCGCGCAGCTGTCGTCGGAGGACTACTACGACGCCTCCTGCCCCGCCGCCCTCTTCACCATCCGGACCGCCGTCTCGACGGCCGTGCTCCTGGACCGCCGCATGGGGGCC
TCCCTTCTCCGCCTCCACTTCCACGACTGCTTCGTGCAGGGTTGTGACGCGTCGGTGCTGCTAGACGACACGGCGAGCTTCACCGGCGAGAAGGGGGCGGGGCCGAACGCGGGGTCGCTT
CGCGGCTTCGACGTGATCGACAACATCAAGATGCTGCTGGAGCTGCTGTGCCCGCAGACCGTCTCCTGCGCCGACATCCTTGCCGTCGCCGCCCGCGACTCCGTTGCACAACTGGGAGGA
CCATCGTGGTCGGTTCCCTTGGGCAGGAGGGACGCCACCACGGCGAGCGCGTCCCTGGCCAACAGCGACCTGCCCGGACCTACCAGCAACCTCAACGGCCTTCTCAACGCTTTCTCCAAC
AAGGGTTTGAGCAGCACCGACATGGTTGCCCTCTCAGGTGCCCACACCGTCGGCCGGGCGCAGTGCAAGAACATCCGGTCGCGGATCTACAACGACACCGACATTGACGCCACCTACGCG
GCGTCGCTGCGGGCAAGCTGCCCCGCGCAGGCCGGCGGCGCCAGCGACGGCGCGCTCGAGCCGCTCGACGACGCCACGCCGGACGCCTTCGACAACGCCTACTTCGGCAACCTGCTCTCC
CAGCGCGGCCTGCTCCACTCCGACCAGGCGCTCTTCGGCGGCGGCGGCGCGACGGACGGCCTGGTCAGCACCTACGCGTCCAGCGCCGACCAGTGGGGGAGCGACTTCGCCGCGGCCATG
GTCAAGATGGGCAACATTAGCCCGCTCACCGGCACCGACGGCGAGATCAGGGTCAACTGCCGGAGAGTGAATTAA

Retrieve as FASTA