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Entry information : SbPrx93 (Sobic.006G135800.1 [2.1] / Sb06g021550 [1.4])
Entry ID 894
Creation 2006-08-08 (Christophe Dunand)
Last sequence changes 2011-01-18 (Toky Ramarohetra (Scipio))
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx93 (Sobic.006G135800.1 [2.1] / Sb06g021550 [1.4])
Name (synonym) SbPrx93 (Sobic.006G135800.1 [2.1] / Sb06g021550 [1.4])
Class Class III peroxidase    [Orthogroup: Prx026]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Seedlings
Inducers Ethylene treatment
Heat shock stress
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx93
start..stop		 S start..stop
SiPrx57 602 0 42..376 22..371
ZmPrx95 566 0 36..376 142..472
BdiPrx130 515 0 76..376 199..496
TaPrx185-1D 506 1e-179 76..376 185..481
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '894' 'complement(join(50786854..50787275,50787403..50787568,50788270..50788449,50789222..50789584))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 50789222..50789584 361 N° 2 50788270..50788449 178 N° 3 50787403..50787568 164 N° 4 50786854..50787275 420
complement(join(50786854..50787275,50787403..50787568,50788270..50788449,5078922 2..50789584))


exon

Literature and cross-references SbPrx93 (Sobic.006G135800.1 [2.1] / Sb06g021550 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_6 (50789584..50786854)
EST ref. GenBank:   CD204129 [5' end]
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.5095.1
Protein sequence: SbPrx93 (Sobic.006G135800.1 [2.1] / Sb06g021550 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   376 (302)
PWM (Da):   %s   38397.35 (32742.4)  
PI (pH):   %s   7.22 (7.41) Peptide Signal:   %s   cut: 26 range:26-327
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPAPKPSPSVAPAPRPSSPPPATPAPPAPPRTAPKPSPPLAPRQ
SPTPAASPPPPAPPQPPSKSTPTMSSTLGQLSPSFYAQSCPGVELAVRDVVRSASTLDPSIPGKLLRLVFHDCFV
EGCDASVLIQGNGTERTDPANLSLGGFNVIDAAKRLLEVVCPATVSCSDIVVLAARDAVVFTGGPAVPVALGRRDGLVSLASNVRRNIIDTGFSVDAMAASFTAKGLTLDDLVTLSGGHT
IGSAHCNTFRERFQVANGSMTPIDGSMNADYANELIQACAAANGAASAATAVDCDSGSASVFDNRYFANLLDGRGLLRTDAVLVQNATTKAKVAEFAQSQDGFFASWASSYARLTGLGVK
TGADGEIRRTCSSVNG

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 2 ESTs . Transcript 5' more long in phytozome version.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCCGGCTCCTAAACCATCCCCATCTGTCGCGCCGGCGCCAAGGCCATCGTCTCCTCCACCTGCCACACCGGCACCACCAGCTCCTCCTCGGACGGCTCCGAAGCCGTCCCCGCCC
TTGGCTCCGAGACAGTCTCCAACACCGGCGGCTTCACCGCCACCACCTGCTCCCCCGCAGCCTCCGTCGAAGTCCACGCCGACGATGTCCTCCACACTGGGCCAGCTCTCGCCCAGCTTC
TACGCGCAGTCCTGCCCGGGCGTTGAGCTGGCGGTGAGGGATGTCGTTAGGTCGGCATCCACCCTGGACCCCTCCATTCCCGGCAAGCTTCTTAGGCTGGTCTTCCATGACTGCTTCGTC
GAGGTATGGAATGCACTGTCTGAATCCTTGCATTTGGTTGTTAAATAAACACTCCATCGTTGCAGACTGAGGACTTTTTTTTTGTTGTGCTCCCCAACAATTAGTGAAATGGATGTGCCT
GATCTAGATGATCATGCAGAGATATTTTCGTGATTAGCTTTTTTGCATGCAAAAAGAAAGGATCTAGTTTACATTCAGGGGCTGCCAGGTGCAATTCCTATCTCATGTTGCTTTGCTCAA
CGATTTTTTACCCCCGTTGTTCAGAGTGCTGAGCAGAAAATATGCAATAGTTGTGCAGACCCAAAGAAATGAACAAGTACAAATTGTAGCAGCAAGTTAACCGTTACCACTTTACCAGTT
ACCTGGAACAAGACCAAGAAAACTGTTTTGAATTGCATCCTCTGATAACGCCACTGCTCAAATCTTTGCATTTATCTATCCTGCTTCCATTTGTCTTGATCCTAAATTCCTAATCACGTG
CATGGATTAGTTTTGGATGTGCCAACATACTCAAAAGTGCGAGAATGGTAGCCTATCTGGTAGACTGGTAACCAAACACAAACAGTTTAGTCAGACCAAGATCTCTTCAAACATCATTAA
TGCCTAGTTGAATACTGGGTACCAAACATCAGTGTAGTCTTTGAAAGCTTTGCATGTGTGTGACTGAAGGCAGCAGCTTATCATATTGCACCCCTGCACACTCTTTATGAAACTTCAGCG
TCCACACTGACATAATACGATTCAGGTTAATGAGTGTTTGTTTTCTTGATCTTAGGGGGATGCGATGCATCGGTGTTGATACAAGGTAACGGTACTGAGAGGACCGATCCTGCAAATCTC
TCACTTGGTGGGTTCAATGTCATCGATGCAGCAAAGAGGTTGCTAGAAGTCGTGTGCCCTGCGACTGTTTCTTGCAGTGACATTGTCGTCCTCGCTGCAAGGGATGCTGTTGTGTTTGTA
AGTATGACAGTCCAATCAGCTCAAACCTCTTCAATGTACAGTTGCTGCAGTTTTGCCTTAGCTTTGCCAAAATTCACCCAAACTGTGAATGCTCCAATAGTTACCTTGGTGCTTAACTTT
AAACATCTCGTAGAAACAATACGTAGTGCCAGTCTTAGAGCACTCACAATGCAGACTCTATTATGGAGTCTAAAGTTATTTATTACCTCGAATAATGAGGATTTAGAGTCTAAATAAGAC
TTGGAGTCTTATTTTTTCTACCTCTTTCTTCAATAAATATGCTGCCACATCAGCAAAATACCATAAATAATATGTAACTAATTGTCTTGGACTCTATGATAGAGTCTTGCATTGTGAGTG
CCCTTAACTACTTACCTGAACATGGGCCAACACAGAATCTCTCGTTAATAAATGTTGAAGGGATTAGATCTCTACGCAATCAATGAATTGATAGTTTCTGGTCCCGTATACTGTATGATA
AGTATGCTGTGACCAAACATCTGCAAGAAGATACAGCTTGCATACTACTCCTAGGTTAGTCCAAATACTACTCTGTGATACAGGTCCCAAAATCAACATAATTCTGTTTCCATGATGTCT
CATGTCTGCCATCTTATGTTTGGGGCAAAGCCGCAGTATGTCCATTTAACAATCCACTAACTGAGATTCTTGTGTACGAACTTTTGTTCCAAAACAAGACACCGGAGGACCGGCGGTGCC
TGTGGCCCTGGGAAGACGAGACGGCCTCGTCTCATTGGCATCCAATGTCCGAAGAAACATCATCGACACGGGTTTCTCCGTCGACGCCATGGCGGCCAGCTTCACCGCCAAGGGGCTCAC
CCTGGACGACCTCGTCACCCTCTCAGGCGTGCAGACGAAAAACTTTGGCCCCCTCCTTTTTTTTTTTTTTTTGGTAATGCGAAACTGGACGCATCTCACCGACGTCGTCTTGCGCGCGTG
CTGTGCTGTGCTGCGCTGTGCTGTGCTGTGCAGGCGCGGCCACACCATCGGGTCGGCGCACTGCAACACGTTCCGGGAGCGGTTCCAGGTGGCGAACGGGAGCATGACGCCCATCGACGG
GTCGATGAACGCCGACTACGCGAACGAGCTGATCCAGGCGTGCGCGGCGGCGAACGGCGCCGCGTCGGCGGCCACGGCCGTGGACTGCGACTCCGGGTCGGCGTCCGTGTTCGACAACCG
CTACTTCGCGAACCTGCTGGACGGGCGGGGCCTGCTGCGCACGGACGCCGTGCTGGTGCAGAACGCCACGACGAAGGCCAAGGTGGCGGAGTTCGCGCAGAGCCAGGACGGCTTCTTCGC
GAGCTGGGCCAGCTCGTACGCCAGGCTCACCGGCCTCGGCGTGAAGACCGGCGCCGACGGCGAGATCCGGCGGACCTGCTCCAGCGTCAATGGCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCCGGCTCCTAAACCATCCCCATCTGTCGCGCCGGCGCCAAGGCCATCGTCTCCTCCACCTGCCACACCGGCACCACCAGCTCCTCCTCGGACGGCTCCGAAGCCGTCCCCGCCC
TTGGCTCCGAGACAGTCTCCAACACCGGCGGCTTCACCGCCACCACCTGCTCCCCCGCAGCCTCCGTCGAAGTCCACGCCGACGATGTCCTCCACACTGGGCCAGCTCTCGCCCAGCTTC
TACGCGCAGTCCTGCCCGGGCGTTGAGCTGGCGGTGAGGGATGTCGTTAGGTCGGCATCCACCCTGGACCCCTCCATTCCCGGCAAGCTTCTTAGGCTGGTCTTCCATGACTGCTTCGTC
GAGGGATGCGATGCATCGGTGTTGATACAAGGTAACGGTACTGAGAGGACCGATCCTGCAAATCTCTCACTTGGTGGGTTCAATGTCATCGATGCAGCAAAGAGGTTGCTAGAAGTCGTG
TGCCCTGCGACTGTTTCTTGCAGTGACATTGTCGTCCTCGCTGCAAGGGATGCTGTTGTGTTTACCGGAGGACCGGCGGTGCCTGTGGCCCTGGGAAGACGAGACGGCCTCGTCTCATTG
GCATCCAATGTCCGAAGAAACATCATCGACACGGGTTTCTCCGTCGACGCCATGGCGGCCAGCTTCACCGCCAAGGGGCTCACCCTGGACGACCTCGTCACCCTCTCAGGCGGCCACACC
ATCGGGTCGGCGCACTGCAACACGTTCCGGGAGCGGTTCCAGGTGGCGAACGGGAGCATGACGCCCATCGACGGGTCGATGAACGCCGACTACGCGAACGAGCTGATCCAGGCGTGCGCG
GCGGCGAACGGCGCCGCGTCGGCGGCCACGGCCGTGGACTGCGACTCCGGGTCGGCGTCCGTGTTCGACAACCGCTACTTCGCGAACCTGCTGGACGGGCGGGGCCTGCTGCGCACGGAC
GCCGTGCTGGTGCAGAACGCCACGACGAAGGCCAAGGTGGCGGAGTTCGCGCAGAGCCAGGACGGCTTCTTCGCGAGCTGGGCCAGCTCGTACGCCAGGCTCACCGGCCTCGGCGTGAAG
ACCGGCGCCGACGGCGAGATCCGGCGGACCTGCTCCAGCGTCAATGGCTGA

Retrieve as FASTA