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Entry information : SbPrx10 (Sobic.001G293100.1 [2.1] / Sb01g028620 [1.4])
Entry ID 896
Creation 2008-10-28 (Christophe Dunand)
Last sequence changes 2008-10-28 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-08-04 (Christophe Dunand)
Peroxidase information: SbPrx10 (Sobic.001G293100.1 [2.1] / Sb01g028620 [1.4])
Name (synonym) SbPrx10 (Sobic.001G293100.1 [2.1] / Sb01g028620 [1.4])
Class Class III peroxidase    [Orthogroup: Prx033]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer Phosphate starvation
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx10
start..stop		 S start..stop
ZmPrx105 616 0 1..327 37..361
ZmPrx142 610 0 1..327 1..326
PviPrx02 592 0 1..327 1..324
SiPrx162 573 0 1..327 1..325
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '896' 'join(49913124..49913354,49913492..49913671,49914017..49914179,49914977..49915386)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 49913124..49913354 229 N° 2 49913492..49913671 178 N° 3 49914017..49914179 161 N° 4 49914977..49915386 408
join(49913124..49913354,49913492..49913671,49914017..49914179,49914977..49915386 )


exon

Literature and cross-references SbPrx10 (Sobic.001G293100.1 [2.1] / Sb01g028620 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_1 (49913124..49915386)
EST ref. GenBank:   CF429563 [3' end]
Protein sequence: SbPrx10 (Sobic.001G293100.1 [2.1] / Sb01g028620 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   327 (307)
PWM (Da):   %s   35008.4 (33059.3) Transmb domain:   %s   i9-31o
PI (pH):   %s   6.41 (6.22) Peptide Signal:   %s   cut: 21 range:21-327
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MQPACARSAALLAALVVVLAYSAVSCRGQLANNYYAGKCGNSSVE
DIIHDAVKARLAWDKRMVAGLLHLQFHDCFVAGCDASILLDGPNTEKTAPENSGIFGYDFIDDVKTALERVCPGVVSCADIIIAATRDAVGMCGGPSYQVQLGRRDGMVSQASMASILPGPNVDVPTAIDLFGRKGINALEMVSLMGAHTVG
VTHCSVIHNRLFDYKGTGLPDPAMDPMYVWILTTYACPKGQAFDNIVYLDDPSSILLVDKSYYSQIMKRHGVLSVDQALGDHNATAWMVNFLATTDFFPSMFSHALNKLAALDVLTGTAG
EIRKNCRRTN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 3 introns) and 2 ESTs. Incorrect prediction from phytozome, exons 1 and 2 are missing.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAGCCGGCCTGCGCGCGCTCCGCCGCGCTGCTCGCCGCCTTGGTCGTCGTGCTGGCTTATTCAGCCGTGAGCTGCCGCGGTCAGCTGGCTAACAACTACTACGCCGGCAAGTGCGGC
AACTCCAGCGTGGAGGACATCATCCACGACGCCGTCAAGGCCCGCCTCGCGTGGGACAAGAGGATGGTCGCCGGCCTCCTCCACCTGCAGTTCCACGACTGCTTCGTCGCTCTGTACGTA
CTACGCAAACACCATCATTGTCTTGCTAGCTAGCTAGCTTCTTCAATATATCATCTATCGATATCGATCCATCTCAGTTTCAACATTATTGATTGATTTATTTGTTGCTGAATATATATT
TGTAATGAAGGGGTGCGACGCGTCGATCCTGCTGGACGGGCCAAATACGGAGAAGACAGCGCCGGAGAACAGTGGCATCTTCGGCTACGACTTCATCGACGACGTCAAGACGGCGCTGGA
GAGAGTATGCCCCGGCGTCGTCTCCTGTGCTGACATCATCATCGCCGCGACAAGGGACGCCGTTGGCATGTGGTGAGTCACCCGGCCCCATTTGTATGCTATATATGCTACGATCGAGCT
GCGAACAAGCAACAATGCTGCCGATTGATCTTTGTTTTGAGGAATCGCAATGCATGCCATATGATGATTGACTTCATTTGCTCCTTGCCATATGATGATTTATTTTTGGTCTTTGCTAAG
AGCAGCAGACAGTTGCTTCAATCTTTAATTATTCATTATTACTATAGGGAGCCTACATCACATGCATTGTTAATACTTTTGTTGTTTTACTAGCTATTTACAAAATGATGATTTATTTGC
ATTTGAACAAAGTATTAACGCGCGTATTAATCTGCGTGTACAACAATGCAAGTCCAGTGCGGAGGGCCGAGCTACCAAGTACAACTGGGCAGAAGAGACGGCATGGTGTCACAAGCGTCA
ATGGCGAGCATTCTGCCGGGCCCCAACGTCGACGTCCCCACCGCTATCGATCTATTCGGACGGAAGGGCATCAACGCCCTCGAGATGGTCAGCCTAATGGGGGTACGTCGCCGCCTATGC
TACGATGATGCAATTTTTATTTTAATGCAGAAAACGAGACATACGTAAAAATTTAGCGAAAGATCGATACAGTGCGTACGTATACCGGATTTACTGGCCACACAGTACAACTTGTGTTGA
AAGTTTTACCATGAACCACGTGCATGCATGTCCTCTCTTCGCTAACATGAAGCAGGCTGGTTTTAATAAATAAATTAGCCTCTTTTGACCTAGAACACAGCTAAGCGTATTGATTCGATG
TGCAGATATCTAGCAGCTCAACACATGGAATATCACGTACACGGTACACAAGTGTTGGCACATAAAATAAACAGTCAGTATATTTAGATATGCGTTAATTTATTGAGCTAGTTTGCTGGT
CTAACGTTATAAGCACTTGTGATCTTAGTACAAATATTATTATATTTATATTATGTTATTTCCCTTTTCAATATGTAACCCGATGCATGATCACTACCCAGCTCCTCATCAAACCGTTAG
GAATCATATGTAAATGCTGAATATAAGTTCTTCTGATCGAGGTCTCGGACTTAGAGCACACAGGTAACATTAAATGAGTTATCCACGCCCACACACAAATTACACTTGGCAGCATTAATA
CTACAATGCAACTGATGCGATACAGTTTGCTTATAATTTGCGAGATGAATCTTTTAAGCCTAATTAGTTATTAGACAATATTTATCAAATACAAATAAATGCTACAGTGTTTATTTTGTA
AATTTTTTTTGTAATTAAACAAGGCCTACAACTCAATCTCATGCATTGTTTTGTTGCAGGCGCGCACACAGTGGGGGTGACACACTGCTCCGTGATCCACAACCGGCTGTTCGACTACAA
AGGCACTGGCTTGCCGGACCCGGCCATGGACCCGATGTACGTGTGGATCCTGACGACGTACGCGTGCCCTAAGGGCCAGGCCTTCGACAACATCGTCTACCTGGACGACCCCTCCAGCAT
CCTCCTCGTCGACAAGAGCTACTACTCGCAAATCATGAAGCGCCATGGCGTGCTGTCCGTGGACCAGGCTCTCGGCGACCACAACGCCACCGCGTGGATGGTGAACTTCCTCGCCACCAC
CGACTTCTTCCCCTCCATGTTCAGCCACGCGCTCAACAAGCTCGCCGCACTCGACGTCCTGACCGGCACCGCCGGCGAGATCAGGAAAAACTGCCGGAGGACCAACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAGCCGGCCTGCGCGCGCTCCGCCGCGCTGCTCGCCGCCTTGGTCGTCGTGCTGGCTTATTCAGCCGTGAGCTGCCGCGGTCAGCTGGCTAACAACTACTACGCCGGCAAGTGCGGC
AACTCCAGCGTGGAGGACATCATCCACGACGCCGTCAAGGCCCGCCTCGCGTGGGACAAGAGGATGGTCGCCGGCCTCCTCCACCTGCAGTTCCACGACTGCTTCGTCGCTGGGTGCGAC
GCGTCGATCCTGCTGGACGGGCCAAATACGGAGAAGACAGCGCCGGAGAACAGTGGCATCTTCGGCTACGACTTCATCGACGACGTCAAGACGGCGCTGGAGAGAGTATGCCCCGGCGTC
GTCTCCTGTGCTGACATCATCATCGCCGCGACAAGGGACGCCGTTGGCATGTGCGGAGGGCCGAGCTACCAAGTACAACTGGGCAGAAGAGACGGCATGGTGTCACAAGCGTCAATGGCG
AGCATTCTGCCGGGCCCCAACGTCGACGTCCCCACCGCTATCGATCTATTCGGACGGAAGGGCATCAACGCCCTCGAGATGGTCAGCCTAATGGGCGCGCACACAGTGGGGGTGACACAC
TGCTCCGTGATCCACAACCGGCTGTTCGACTACAAAGGCACTGGCTTGCCGGACCCGGCCATGGACCCGATGTACGTGTGGATCCTGACGACGTACGCGTGCCCTAAGGGCCAGGCCTTC
GACAACATCGTCTACCTGGACGACCCCTCCAGCATCCTCCTCGTCGACAAGAGCTACTACTCGCAAATCATGAAGCGCCATGGCGTGCTGTCCGTGGACCAGGCTCTCGGCGACCACAAC
GCCACCGCGTGGATGGTGAACTTCCTCGCCACCACCGACTTCTTCCCCTCCATGTTCAGCCACGCGCTCAACAAGCTCGCCGCACTCGACGTCCTGACCGGCACCGCCGGCGAGATCAGG
AAAAACTGCCGGAGGACCAACTGA

Retrieve as FASTA