View Redoxidase 9045

Entry information : GmPrx[P]268 (Glyma15g21530.1)

Entry ID	9045
Creation	2011-07-04 (Qiang Li)
Last sequence changes	2011-12-14 (Qiang Li)
Sequence status	theoretical translation / pseudogene
Reviewer	Not yet reviewed
Last annotation changes	2011-11-28 (Qiang Li)

Peroxidase information: GmPrx[P]268 (Glyma15g21530.1)

Name (synonym)

GmPrx[P]268 (Glyma15g21530.1)

Class

Class III peroxidase [Orthogroup: Prx009]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Glycine

Organism

Glycine max (soybean) [TaxId: 3847 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	GmPrx[P]268 start..stop	S start..stop
GmPrx307	422	5.99e-151	1..246	31..276
GmPrx234	387	3.21e-137	1..246	28..270
LjPrx31	356	1.05e-124	1..254	32..286
PvPrx02	353	1.3e-123	1..245	28..271

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	19805847..19806608	760
join(19805847..19806608)

Literature and cross-references GmPrx[P]268 (Glyma15g21530.1)

DNA ref.	Phytozome 12: Gm15 (19805847..19806608)

Protein sequence: GmPrx[P]268 (Glyma15g21530.1)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	251
PWM (Da):	27417.64
PI (pH):	6.33

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

YNDTCPQFSQ IIRDIVTRKQ IMSPTTVIAT LRLFLHDCLL PNDCDASILL SSIAFSKVER NANINHSLPS DTFDLIIRAK AALELSCPNT ISCSNILFDA TCDLLTMLGG PFFLVFLGRC NGQTSLAFAV SSHLSTPSMP ISQITQLFAK CGFTVEEFVA LSGAHTIEFS HCFEFVTNLS NNTSSSYNPR YAQGLQKACA DYKTNPTLSV FNDIMTSNKF YNAYL*NLPK GLGVLKSDLG
LYGDPS**TF SSRF

Retrieve as FASTA

Remarks

Pseudogen from genomic. Incorrect prediction from Phytozome (Stops in frame. Both 5' end and 3' end are missing).

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TATAATGACA CGTGTCCACA GTTCAGCCAG ATCATTAGGG ACATAGTAAC CCGCAAGCAG ATCATGAGCC CCACCACAGT CATTGCCACC CTCCGCCTCT TCCTCCACGA CTGCCTTCTC CCCAATGACT GCGATGCCTC CATCCTTCTC TCCTCCATCG CCTTCTCCAA GGTTGAGCGC AACGCCAACA TCAACCATTC CCTCCCAAGC GACACCTTTG ACCTCATCAT CCGTGCCAAG GCCGCCCTCG AGCTCTCCTG CCCCAACACC ATCTCTTGCT CTAACATCCT CTTCGACGCC ACCTGCGACC TCCTGACCAT GCTCGGCGGC CCCTTCTTCC TCGTCTTCCT CGGTCGTTGC AACGGCCAGA CCTCCCTCGC CTTCGCCGTA TCCTCCCACC TCTCCACCCC CTCCATGCCC ATCTCCCAAA TCACCCAACT CTTCGCCAAA TGCGGCTTCA CCGTCGAAGA ATTCGTCGCC CTCAGTGGGG CCCACACCAT CGAATTCTCT CATTGCTTCG AGTTCGTCAC CAACCTCTCC AACAACACTT CCTCCTCCTA CAACCCTCGC TACGCTCAGG GGCTTCAAAA GGCTTGTGCA GATTACAAAA CTAACCCTAC CTTATCAGTC TTCAACGATA TCATGACGTC GAACAAGTTC TATAATGCTT ACCTCTAGAA CCTTCCCAAG GGTTTGGGTG TGTTGAAATC TGACCTTGGT
TTGTATGGTG ACCCTTCTTA ATGAACCTTC TCCTCACGTT TT

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA