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Entry information : SbAPx04 (Sobic.007G177000.1 [2.1] / Sb07g024880 [1.4])
Entry ID 913
Creation 2008-09-02 (Christophe Dunand)
Last sequence changes 2011-01-18 (Toky Ramarohetra (Scipio))
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbAPx04 (Sobic.007G177000.1 [2.1] / Sb07g024880 [1.4])
Name (synonym) SbAPx04 (Sobic.007G177000.1 [2.1] / Sb07g024880 [1.4])
Class Ascorbate peroxidase    [Orthogroup: APx2003]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation Thylakoid-bound
Tissue types Leaves
Roots
Inducers Colletotrichum inoculation
Oxidative stress
Pathogen interaction
Wounding
Repressor N/D
Best BLASTp hits
Perox score E-value SbAPx04
start..stop		 S start..stop
ZmAPx04 573 0 1..289 1..289
OsAPx04 516 0 1..289 1..291
ScAPx04 510 0 1..289 1..291
TaAPx06-1A 507 0 1..289 1..291
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '913' 'join(59856509..59856621,59857620..59857744,59858344..59858393,59858538..59858603,59858682..59858730,59859166..59859248,59859321..59859400,59859497..59859599,59859707..59859907)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 59856509..59856621 111 N° 2 59857620..59857744 123 N° 3 59858344..59858393 48 N° 4 59858538..59858603 64
N° 5 59858682..59858730 47 N° 6 59859166..59859248 81 N° 7 59859321..59859400 78 N° 8 59859497..59859599 101
N° 9 59859707..59859907 199  
join(59856509..59856621,59857620..59857744,59858344..59858393,59858538..59858603 ,59858682..59858730,59859166..59859248,59859321..59859400,59859497..59859599,598 59707..59859907)


exon

Literature and cross-references SbAPx04 (Sobic.007G177000.1 [2.1] / Sb07g024880 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., An EST database from Sorghum: acid- and alkaline-treated roots. unpublished
DNA ref. Phytozome 12:   chromosome_7 (59856509..59859907)
EST ref. GenBank:   CN127917.1 [5' end]  CN127831.1 [3' end]
Cluster/Prediction ref. UniGene:   Sbi.4502
Protein sequence: SbAPx04 (Sobic.007G177000.1 [2.1] / Sb07g024880 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   289
PWM (Da):   %s   31441.32 Transmb domain:   %s   o260-282i
PI (pH):   %s   7.68
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPVVDAEYLRQVDRARRHLRALISNKGCAPIMLRLAWHDAGTYDVKTKTGGANGSIRYEEEYTHGSNAGLKIAIDLEPIKAKNPKITYADLYLAGVVAVEVTGGPTVEFIPGRRDSSV
CPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTGRAHPDRSGFEGAWTKEPLKFDNSYFLELLIEESEGLLKLPTDKALLSDPEFRRYVDLYADEDAFFKDYAESHKKLSELGF
TPRSTASAKSDLPTGAVLAQSAFGVAVAAAVVIAGYLYEASKKAK*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 7, 8 introns) and 34 ESTs
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCTCCCGTGGTCGACGCCGAGTACCTGCGCCAGGTCGACAGGGCGCGCCGCCACCTCCGCGCCCTCATCTCCAACAAGGGATGCGCCCCGATCATGCTCCGCCTCGCGCGTACG
TACATACGCCAATCACTCACCCTCCTCACGCACTCGTGTACTCCCCCGGACCCCCCAACTACTGCTGACTTTTTCCCCCCGCGGCCCTGTTGCCTCTGATTGGCATGGGGATTCCAGGGC
TGTTGAACCCTTGATGGCTTAGTCTGTAGCGCGCTTGCTTGCTGCTCTCTCGTGCTTCACGGTTGAGCTGACTGGCGTGTGAGGTTTGCGCGCCTGGTTTCGTGCCTAGTCGCGGTTTCG
TCTGATTTGGTTTCGCTCTTTGCTGAGGCAATTTATCGAGCACTTTGCCTGCGTGTTCGCGTGCGCGTGCCCTAGCGCATAAGCGTCTCCTAATCTTAGTTTCCTTGCCGCGGCTGTCGC
ACTGACACGAAGGGTAGGTGGTGATGAATTTCGGGTTATTAAATTCACATCTTAATCTTGTTAGAATTGTTAGGATAGAACACTTAGTCAAATCACAACAATAGCCCAATCTGTGTCATA
CAGTAGTGCTGCAACTGTCACAACCGTTTTTCTTAGTTCCATAGATAGATCGTGGAAAGCTCAGACAAGATGCCTGTTCTAGCTCAACTAGGATTACCTTTGCTTTACTCATGTCATTAT
GTGGACTGTGGAATTGGTGACAGGTGGGTAGGGTACTAGGGTACCTCTGTATTCCTGTTTGAGTTAGGACTTGGGAGAAAGTATTTTATCGGCTAATAGACGAAAATATATGGTGCTTAC
TTGGTGACAGCTTATGAGAAGCTCCAGTAGAGCACAATTTTGTAGAGGACCACTCCAACTGATATGGCTCACTAGCGTTATGTTGGAGTTCCCATACTTTTACATACATTGGATTCATAT
TTATACTATTGATATGATAACCAGTTAAATCACACCAAATTGGCCTCCATTTTCTGTAGGATTCTTCCAGAAATGTATCCTGCTTAATATGAATTGAGCTTACACCATTCTTCCTGTCAT
TCAAACACTGAAGACTTTTGCTCTCCCTTGCAGATGGCATGATGCTGGAACTTATGACGTGAAGACAAAGACCGGTGGTGCAAATGGTTCGATTAGATATGAGGAAGAGTACACCCATGG
CTCAAATGCTGGTTTAAAGATTGCCATCGATCTCCTTGTGGTATGCATTATTTATACTCAATACGATACTGGATGCCTGTGCAAGAGTATTATTGTTATTATTATATCGACCTATAAACT
AAGTATGATCTACTTGAATGAGGATTTTGAAGAAATCAATTTGCAATTTTTTTCTAGTTTCTTTCTGATAAACTGAAACTCCTTTTCTGTGACTGGGTTTTCTGCTACCTTCAAGGTCAG
ATAACAAAATAATGGATTTTCATTCAGTTATTCTGGGATGATAAATTGAGAAAATTATATAGTATGATTTTAGCTGTTGCTGCTTAGAGAAGTCCTCCCATAATCATCTACTTGGTCAGA
ACTATTAGTTTTAGGTCTATTCCCTGCCATTCAGACATGCAGTTAGATTATGTACTCATGACAATGGTTACCTGTATTATACTATAAAGCCTTAAATGTAAAATCAAAAGGTGTCTTAGT
CAGAGCAACTGCAGTTTATGAGAATGCTACTGTTTGTAAATCATACTCCATGTGGAATCATGGTGATTTGTATTTCTTGTTTCCTTCTGTATTTCTTCGCTTCTGAAATAAATGAAATCA
TTAGTATTGCTTATTCAGTTGTCTCTTGTTTTCCTCTAGAGCCTATCAAAGCAAAGAATCCCAAGATAACATATGCAGACCTTTATCAGAGGTAACTTGGGATCACCTTAAATTTGCTCT
TCTATAGGTTGTCTGGCTTTTTTAACCCTGTTGTGATTGGACTTTTTTATCCTGTTGGGAAGGGTGAAACTCTGAATTCAGTATAAATACTGACCTGCTAAGTATTTATAAACAGCTTGC
TGGAGTGGTTGCAGTTGAAGTGACTGGGGGACCAACTGTTGAGTTTATTCCTGGGAGACGTGTGTATGTAAAAAAACCATTCCTTCATAATTGGATTCATTTTTCCTGATGTTCACTCTG
TAACTGGTTGACGTTAATCAGGATTCGTCAGTGTGCCCCCGTGAAGGGCGTCTGCCAGATGCTAAGAAAGAGGTATTTACTACCTTGGCCTATACTCGTGTGGTTTTAACTGTAACATGC
CATGTATCCTAAGTTCCTAACATTATTCCTTTAACATGATTAATTGATTACTCTGGAAGTTTGAGAGGGAGGGAAGGAAGGATGGTACTGCGTAATTCATGTGTAAAACCTTCTTGTTGC
TTCTCAACATCAAACTGTTATGTGTATCTGCGCTCCATGTTTGCTCGTGGATTTCTTGCCTGAAGTCTTATTGAAAAACACAAATATCATTTTCTATTAGGAACTGTTCCTGCATTTCTC
CATATAACTAGTACTATATACAACATGTGTCTGTATCCAGCTTTGGTAATTTTTATCCTGATGGCTTTGGTGTTATTCTGTACTTATTATTTGATCGCATCTGTTGCTAATGTACATCTC
GTTTTTTTGGCTTCTTTGCACGAATAGGTGCACCACATCTGAGGGACATCTTTTATCGGATGGGCTTATCGGACAAAGATATTGTAGCTCTATCAGGGGGCCATACTCTGTGGTAAATTG
TTATAGTCTCTGAAGGAGAAACTCATTTGTTCATGAGTGCATCTTAATACCTTTGTTCTTTTAGGGAAGGGCTCATCCTGACAGGTCTGGATTCGAAGGTGCCTGGACAAAGGAGCCTCT
TAAGTTTGATAACTCATACTTTCTCTGTAAGTCGAACAAAGTCAGAATTTCTACTTGGTTTGCTGACTAGATTCCATACGGTAAACGAGAGTGTTGTCGACTAATTTATTATGTTATTGC
AGTGAGCTGTTGATTGAGGAATCTGAGGGGCTTTTAAAGCTCCCAACTGATAAGGCACTGTTATCAGATCCTGAGTTTAGGCGCTATGTGGACCTTTATGCAAAGAGGTGAATAGGACTT
ATAAGTTATCATTATGCACAGCACACTTTAGCACCTTGTTTGGTTAAGGTTCAGATCCACTGATTCAGAACCATGTCTTTTGTTCATACCGCAGGATGAAGATGCCTTCTTCAAGGACTA
CGCTGAATCACACAAGAAACTCTCTGAGCTTGGCTTCACGCCTCGCAGCACAGCATCAGCCAAATCAGACCTTCCAACCGGTGCTGTACTTGCACAGAGCGCCTTTGGGGTAGCGGTTGC
TGCAGCCGTAGTCATCGCTGGCTACTTGTACGAGGCTTCCAAGAAGGCCAAGTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCTCCCGTGGTCGACGCCGAGTACCTGCGCCAGGTCGACAGGGCGCGCCGCCACCTCCGCGCCCTCATCTCCAACAAGGGATGCGCCCCGATCATGCTCCGCCTCGCATGGCAT
GATGCTGGAACTTATGACGTGAAGACAAAGACCGGTGGTGCAAATGGTTCGATTAGATATGAGGAAGAGTACACCCATGGCTCAAATGCTGGTTTAAAGATTGCCATCGATCTCCTTGAG
CCTATCAAAGCAAAGAATCCCAAGATAACATATGCAGACCTTTATCAGCTTGCTGGAGTGGTTGCAGTTGAAGTGACTGGGGGACCAACTGTTGAGTTTATTCCTGGGAGACGTGATTCG
TCAGTGTGCCCCCGTGAAGGGCGTCTGCCAGATGCTAAGAAAGGTGCACCACATCTGAGGGACATCTTTTATCGGATGGGCTTATCGGACAAAGATATTGTAGCTCTATCAGGGGGCCAT
ACTCTGGGAAGGGCTCATCCTGACAGGTCTGGATTCGAAGGTGCCTGGACAAAGGAGCCTCTTAAGTTTGATAACTCATACTTTCTTGAGCTGTTGATTGAGGAATCTGAGGGGCTTTTA
AAGCTCCCAACTGATAAGGCACTGTTATCAGATCCTGAGTTTAGGCGCTATGTGGACCTTTATGCAAAGGATGAAGATGCCTTCTTCAAGGACTACGCTGAATCACACAAGAAACTCTCT
GAGCTTGGCTTCACGCCTCGCAGCACAGCATCAGCCAAATCAGACCTTCCAACCGGTGCTGTACTTGCACAGAGCGCCTTTGGGGTAGCGGTTGCTGCAGCCGTAGTCATCGCTGGCTAC
TTGTACGAGGCTTCCAAGAAGGCCAAGTAG

Retrieve as FASTA