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Entry information : SbRboh10 (Sobic.005G139700.1 [2.1] / Sb05g020380 [1,4]RbohD)
Entry ID 918
Creation 2008-11-15 (Christophe Dunand)
Last sequence changes 2008-11-15 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-06 (Messaoudi)
Peroxidase information: SbRboh10 (Sobic.005G139700.1 [2.1] / Sb05g020380 [1,4]RbohD)
Name (synonyms) SbRboh10 (Sobic.005G139700.1 [2.1] / Sb05g020380 [1,4]RbohD)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Roots
Inducer Dark growth
Repressor N/D
Best BLASTp hits
Perox score E-value SbRboh10
start..stop		 S start..stop
ZmRboh06 1717 0 1..936 1..932
OsiRboh04 1614 0 1..936 1..938
OsRboh08 1613 0 1..936 1..936
TaRboh10-1A 1580 0 25..936 17..919
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '918' 'complement(join(49930109..49930218,49931242..49931759,49933038..49933120,49933228..49933330,49933596..49934746,49934840..49934888,49934972..49935128,49935236..49935875))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 49935236..49935875 638 N° 2 49934972..49935128 155 N° 3 49934840..49934888 47 N° 4 49933596..49934746 1149
N° 5 49933228..49933330 101 N° 6 49933038..49933120 81 N° 7 49931242..49931759 516 N° 8 49930109..49930218 108
complement(join(49930109..49930218,49931242..49931759,49933038..49933120,4993322 8..49933330,49933596..49934746,49934840..49934888,49934972..49935128,49935236..4 9935875))


exon

Literature and cross-references SbRboh10 (Sobic.005G139700.1 [2.1] / Sb05g020380 [1,4]RbohD)
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_5 (49935875..49930109)
Cluster/Prediction ref. UniGene:   Sbi.18363
Protein sequence: SbRboh10 (Sobic.005G139700.1 [2.1] / Sb05g020380 [1,4]RbohD)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   936 (305)
PWM (Da):   %s   104766.67 (32300.1) Transmb domain:   %s   o378-397i522-544o564-586i750-767o
PI (pH):   %s   9.66 (7.68) Peptide Signal:   %s   cut: 27 range:27-331
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MHNPRPGGGDIVEMSSSSSAAAPHEAGARDRERVIPHSGPLSKKT
GARKSARFAESVSAPLTAPPPPRASSANNNDDDDDYVEITLDVRDDSVAVHSVKPAHGGGGGGDDSDVTLLARTL
ENRRASGHSVIRNASSRIKQVSQELRRIASINRRGGGGGAR
LDRSKSAAAHALKGLKFISKAEGAAGWEAVEKRFDKLAENGLLHRSKFGQCIGMKEPEFAGELFDALSRRRNISGDSISKAELLEFWDQISDTSFDGRLQTFFDMVDKDADGRITEEEVKIITLSASANKLSKITDQAEEYARLIMEELDPANLGYIELYNLEMLLLQAPSQSVRIGTTNSRNLSQMLSQSLRPTPEPN
PLRRWYRRVHYFLEDNWRRVWVLLLWLSICAALFAWKFTQYRRRYVFHVMGYCVCVAKGGAETLKFNMALILLPVCRNTITWLRNRTTAVARVVPFDDSLNFHKVVAVGITVGAALHIVS
HLTCDFPRLLHATDEAYAPLGQYFGTRRPPDYWWFVKGTEGWTGLVMLVLMAVAFTLATPWFRRGRVALPGPVLRRLTGFNAFWYSHHCFVAVYALLVVHGQYLYLTHKWYKKSTWMYLA
VPVALYACERLTRALRSSVRPVKILKVAVYPGNVLSLHFSKPQGFRYRSGQYIFVNCAAVSPFQWHPFSITSAPQDDYVSVHIRTLGDWTRELKNVFSVCRPPTEGKSGLLRAEYDRDGS
AMANPSFPKVLIDGPYGAPAQDYKQYDIVLLVGLGIGATPMISIIKDIINNMKQPDGDLEAGAGADTSASSMASSFRTRRAYFYWVTREQGSFEWFRGVMDEVAETDKKGVIELHNYCTS
VYEEGDARSALIAMLQSLNHAKHGVDVVSGTRVKTHFARPNWRNVYKRIALNHQNQRGVFYCGAPVLTKELRELAQDFSRKTNTKFEFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, 7 introns) and 4 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATAACCCGAGGCCGGGCGGCGGTGACATCGTCGAGATGTCGTCGTCGTCGTCCGCCGCCGCGCCGCACGAGGCGGGAGCCAGGGACAGGGAGCGCGTGATCCCACACAGCGGCCCG
CTGAGCAAGAAGACCGGGGCGAGGAAGAGCGCGCGGTTCGCCGAGTCCGTGTCCGCGCCTCTCACCGCGCCGCCGCCGCCGCGCGCGTCGTCCGCCAACAACAACGACGACGACGACGAC
TACGTGGAGATCACCCTCGACGTGCGCGACGACTCGGTGGCGGTGCACAGCGTCAAGCCCGCCCACGGCGGCGGCGGCGGCGGAGACGACTCGGACGTGACGCTGCTGGCGCGCACGCTG
GAGAACCGGCGGGCGTCCGGCCACTCGGTGATCCGGAACGCCTCGTCGCGGATCAAGCAGGTGTCGCAGGAGCTCCGCCGCATCGCCTCCATCAACCGCCGCGGCGGCGGCGGCGGGGCG
AGGCTGGACCGGTCCAAGTCCGCGGCCGCGCACGCGCTCAAGGGGCTCAAGTTCATCAGCAAGGCCGAGGGCGCCGCCGGATGGGAGGCCGTCGAGAAGCGCTTCGACAAGCTCGCCGAG
AACGGGCTCCTCCACCGCTCCAAGTTCGGCCAGTGCATCGGTACTGAGAAATGAATCCTTCTGCTTCGTTGCTTCTTCTTTCGTGCGTTTTGGCGTGTTAATTCGTCGTGTTGTACTAAC
CACACACATGGATCAACAACGCAACAGGGGGATGAAGGAGCCGGAGTTCGCCGGCGAGCTGTTCGACGCGCTGTCTCGGCGCCGCAACATCTCCGGCGACAGCATCAGCAAGGCCGAGCT
GCTCGAGTTCTGGGACCAAATCTCCGACACCAGCTTCGACGGCCGCCTGCAGACCTTCTTCGACATGTACGTTCAGTTGCTTGTAATTACTACAACACACTAGTAATTACGGACCGTCAA
ACGCTCATCTCCCTTAATTACACTTGCAGGGGGTCGACAAGGACGCGGACGGCAGGATCACCGAGGAGGAGGTCAAAGAGGTAACTTGGTCAACAGCCTTTCCAAGTGTCTTGTTGAACC
AAACCAAACCAAACCAAACCAAATCAAACGAAACCAACAAATGGTTGCTGCAGATATCATCACGCTGAGCGCGTCAGCGAACAAGCTGTCGAAGATCACAGATCAAGCGGAGGAGTACGC
TCGTCTAATCATGGAGGAGCTAGACCCTGCCAACCTGGGCTACATCGAGCTCTACAACCTGGAGATGCTGCTCCTCCAAGCTCCGTCCCAATCCGTGCGGATCGGCACCACCAACAGCCG
GAACCTGAGCCAGATGCTGTCGCAGAGCCTCCGCCCGACGCCGGAGCCGAACCCGCTCCGGCGCTGGTACCGCCGCGTGCACTACTTCCTGGAGGACAACTGGCGGCGCGTGTGGGTGCT
CCTCCTGTGGCTCTCCATCTGCGCCGCGCTCTTCGCCTGGAAGTTCACCCAGTACCGCCGCCGCTACGTCTTCCACGTGATGGGCTACTGCGTCTGCGTCGCGAAGGGCGGCGCCGAGAC
GCTCAAGTTCAACATGGCGCTCATCCTCCTGCCCGTCTGCCGGAACACCATCACCTGGCTCCGCAACCGGACCACCGCCGTGGCGCGCGTCGTCCCCTTCGACGACAGCCTCAACTTCCA
CAAGGTGGTCGCCGTCGGGATCACCGTGGGCGCCGCGCTCCACATCGTCTCCCACCTGACGTGCGACTTCCCGCGGCTCCTCCACGCCACCGACGAGGCGTACGCGCCGCTGGGGCAGTA
CTTCGGGACGCGGCGGCCGCCGGACTACTGGTGGTTCGTGAAGGGCACGGAGGGGTGGACGGGGCTGGTGATGCTGGTGCTCATGGCGGTGGCGTTCACGCTGGCGACGCCGTGGTTCAG
GAGAGGGAGGGTGGCGCTGCCGGGCCCCGTGCTCAGGCGGCTCACCGGGTTCAACGCGTTCTGGTACTCGCACCACTGCTTCGTGGCGGTGTACGCGCTGCTCGTCGTGCACGGGCAGTA
CCTGTACCTGACGCACAAGTGGTACAAGAAGTCGACGTGGATGTACCTGGCCGTGCCCGTGGCGCTGTACGCGTGCGAGAGGCTGACGAGGGCGCTCAGGTCCAGTGTCCGCCCCGTGAA
GATACTCAAGGTGGCGGTTTACCCTGGGAACGTCCTGTCGCTGCATTTCTCCAAGCCGCAGGGGTTTCGGTACAGGAGTGGACAGTACATCTTCGTCAACTGCGCCGCCGTCTCGCCGTT
CCAGTGGTAAGTAGTAAAGCTTTGGGTTTCTTGGAGTTTTTAAGTTTGGAAGGAGTCAGAAGTGGTAGTTTTGAAGGTTTTTTTTGTTGTTGTTGAGATTCATGGTTTGATTATTAGGCT
GCTGATGCTAGCTTTGTTTAATTAGTTTTTATGTATGCTAGTAGTCCGTCGTTAGTTTAGTTGATGGAAGAAGGGAAGCAAAGCACAGATGCTTCTTCGTCTGTCGGTTAATGACTTTTT
TTTTTTGCGTGTGTCGTTGGTTGCGTTGCAGGCGCACCCGTTCTCCATCACGTCGGCACCACAGGACGACTACGTGAGCGTGCACATCAGGACGCTGGGTGACTGGACACGCGAGCTCAA
GAACGTCTTCTCGAGGGTACGTGTATATATATATATATATATATATATATATATATATATATATACGTGTGGTGGATTGCTGCTGCTCTGAAGCTAAACTTGTTGAGTGCTTGCGTGCTG
CAGGTGTGTGCCGGCCGCCGACGGAGGGCAAGAGCGGGCTGCTCCGCGCCGAGTACGACCGCGACGGCAGCGCCATGGCCAACCCCAGGTTTGTGACAAAACCACCAATATTATCCAGTT
TCCTCGCGTCTCCACGACAAAAACGTTGAGTGGGAGGGAGCAGAAGATGTTGACGAGTCGTCTCGTGTGGAGCCGGGGGTGTTGGGGTTGGACCGGACCAGGTCTCGCACTCTCGCTGGG
TGTGGTGGTAGGTGGGCAGTGGCCGCGTCGTCGTCACTGGCCGTTCGTCCGTGTGCCACTGTGCTGCTCGCAGATGGAGCTGGTGCTCTCCAGCTGTAGGACGGGTTCACACATGTCAAC
AAGGTCCAGGACCCGCATGGGCTGGGTTGGTTGGTTCGCATTGGCTGGCTCCAGTCCAGTCGGTGGCGCCACCTTCTCTGACCTCTTTATCCCCTTCCCTTCCGTTCCGAGAACCTTTTA
CCCGGTCAGCAGGACGTACAAAAAGGCCATGGCATTTGGCATGGCATGGCATGAGATCATCCCTTGCATCACCGGTCTCGACCGTATGGTTTTCTACGGTGCCACACAGCAGCAACACAA
CACACATAATAGCCTTGTATACGTTTCACATTGCCAAAGTGCCAACATAAGCTTCTTTCGGTGTGGACATTTGGGGGTTATTAGCAGGTGTGTTGACCTTGACCCCCTGCGCGCGGGCAG
GATCTCCGTCACCGAACAGTAGTGGTAGACTGATGGTAGCGGTAGGTGGTGGCTACCTGCCTTGGTTCAGTTCGGCCGGTGGGCATGATGAGCTAGCCGGTGGCCGGCCGGTGATATTCC
CGGCGGTGGAAGATGAGTTCTGTTGGTCCTGCTGGTTTGTCCATGGGCCATATGACCATGTCTGAGGGGGAAAGACGGCCAGTGGTTGGGGATAAGGTGAACAATTGGTCTAGCAACGCC
TGCCCATTTAATTTGCATGCCCAACATATTCCACTCCGAATATTCTTTCTTTTTTTTCATTGATATAAAAAAAAAATTCTTTGGGACAAAGGACATTCTCTGCACGCGTCGTCCCATTTT
CTGCCTGTGAAACACGGAGAGCGAGCAGCAATGCTGTGTGGCTTGTGAGTGTGGGTTACGTACGGTTCTCCTATTTGATAATCAAACACGGTTGACTTCGCCGCCTCTCCGACAAAACTG
ATTTTTGACTCTCTAATATAGTACTGTATACTCCAACTGCTCCTTGGATGAATTTTGAGTTTTTTTTTAACTACAATGTATGCCAACTGCTCCTTGCATTGGATCTTTTGTGCATTTGGT
TGACCGTTTGGATTAATCAAAACTATCATCATTCCTCTGAATGCAGCTCTTCCCCAAGGTGCTGATCGACGGCCCCTACGGCGCGCCGGCGCAGGACTACAAGCAGTACGACATCGTGCT
TCTCGTCGGGCTGGGCATCGGCGCCACGCCCATGATCTCCATCATCAAGGACATCATCAACAACATGAAGCAGCCGGACGGCGACCTGGAAGCCGGCGCCGGCGCCGACACGTCGGCGTC
CTCCATGGCGTCGTCGTTCCGCACGCGGCGCGCCTACTTCTACTGGGTGACCCGGGAGCAGGGCTCCTTCGAGTGGTTCCGCGGCGTCATGGACGAGGTGGCCGAGACGGACAAGAAGGG
CGTCATCGAGCTCCACAACTACTGCACCAGCGTGTACGAGGAAGGCGACGCCCGGTCGGCGCTCATCGCCATGCTCCAGTCGCTCAACCACGCCAAGCACGGCGTCGACGTCGTGTCCGG
GACACGCGTCAAGACGCACTTCGCCAGGCCCAACTGGCGCAACGTCTACAAGCGCATCGCCCTCAACCACCAGAACCAGCGCGTCGGTAAGTTTTTTGTTAGTTGCATTCAGACGCCATT
TTCCTACGTACTCTACTACTTTTTTTTTAACCCTGTTTATTTCATCCATCAACACATGCATTTAGCTACTTAATTATTACTACTGCCGACGTCGAATGTGTAGAAAGGTTAATCCAATGT
GTGCACATGGTGGTCTATGCCGCCACGCTTCTCTCTCACTGGATCGATGGATCGCGGTGAAAGAAGCACTCTACCAAACTTGATGCATGGTAGAGTGGATAGGTGTGATGATCGTGGAGT
AGTGCAATTGTGGCTGGCTGGCCTAACTTTGGCCGCAGGACCTAGCGAGCTGACAGGGACAGTCATTATGCATGACCACCAGCACCGGGGCTTTGTGGTGTGCTTGCTATGCGTGTTCAA
TTTGAACTTTAGCCATGGTTGAGACTTTGAGAGTGAAATAGGACCGATCACTGTTGCTTGCTGATAGGCACAACCAATAAGTCGGCGATGAGATGATTGATGATTATATAAACAAGAGTT
CGCATTGCATTGGCAACTGCGATTAGATGATTATTTATTGGATTTGTTAAAAGCCGAGTAAGTCTCCTTTTTAAAAAAAATGTGATTAGATTATAGATTAGGGGCTAATTAACCAATCAT
TGTTACATGCTGACAATTATTGGAAGCAAAAATAAAAGTATTAAATGGTGAGCATATAGTCACTTGGAAAGAGATGAATTATGAAGCATGGGCATCTCTATAAAGTTCAATACTAAAAAG
TTGGGTCAGATATATAGGCACCAGATTTCTTTGACATATAGTATTTCTAAGAGGTGCTGCATGCTCATCACTTGCCTAACTGAGTCAAATCAAGCATGCTTATTAGCAGCTCCACCGTTA
CCTGAAAAAGGGGTAAAAGGATAATTAAAACAACAACACGGCCAATCATCATCTTAGTTAATTACTTCATCATACAGTAATGCATTACTTCCTCATACTTCAATTTCTGAATCAGCACTG
ACATCTTTGATCGATCTTTGATGTTGCAGGAGAGTGTTCTATTGTGGTGCTCCGGTGCTGACAAAGGAGCTGCGCGAGCTCGCGCAGGATTTCTCGCGGAAAACCAACACCAAGTTCGAG
TTCCACAAGGAGAACTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATAACCCGAGGCCGGGCGGCGGTGACATCGTCGAGATGTCGTCGTCGTCGTCCGCCGCCGCGCCGCACGAGGCGGGAGCCAGGGACAGGGAGCGCGTGATCCCACACAGCGGCCCG
CTGAGCAAGAAGACCGGGGCGAGGAAGAGCGCGCGGTTCGCCGAGTCCGTGTCCGCGCCTCTCACCGCGCCGCCGCCGCCGCGCGCGTCGTCCGCCAACAACAACGACGACGACGACGAC
TACGTGGAGATCACCCTCGACGTGCGCGACGACTCGGTGGCGGTGCACAGCGTCAAGCCCGCCCACGGCGGCGGCGGCGGCGGAGACGACTCGGACGTGACGCTGCTGGCGCGCACGCTG
GAGAACCGGCGGGCGTCCGGCCACTCGGTGATCCGGAACGCCTCGTCGCGGATCAAGCAGGTGTCGCAGGAGCTCCGCCGCATCGCCTCCATCAACCGCCGCGGCGGCGGCGGCGGGGCG
AGGCTGGACCGGTCCAAGTCCGCGGCCGCGCACGCGCTCAAGGGGCTCAAGTTCATCAGCAAGGCCGAGGGCGCCGCCGGATGGGAGGCCGTCGAGAAGCGCTTCGACAAGCTCGCCGAG
AACGGGCTCCTCCACCGCTCCAAGTTCGGCCAGTGCATCGGGATGAAGGAGCCGGAGTTCGCCGGCGAGCTGTTCGACGCGCTGTCTCGGCGCCGCAACATCTCCGGCGACAGCATCAGC
AAGGCCGAGCTGCTCGAGTTCTGGGACCAAATCTCCGACACCAGCTTCGACGGCCGCCTGCAGACCTTCTTCGACATGGTCGACAAGGACGCGGACGGCAGGATCACCGAGGAGGAGGTC
AAAGAGATCATCACGCTGAGCGCGTCAGCGAACAAGCTGTCGAAGATCACAGATCAAGCGGAGGAGTACGCTCGTCTAATCATGGAGGAGCTAGACCCTGCCAACCTGGGCTACATCGAG
CTCTACAACCTGGAGATGCTGCTCCTCCAAGCTCCGTCCCAATCCGTGCGGATCGGCACCACCAACAGCCGGAACCTGAGCCAGATGCTGTCGCAGAGCCTCCGCCCGACGCCGGAGCCG
AACCCGCTCCGGCGCTGGTACCGCCGCGTGCACTACTTCCTGGAGGACAACTGGCGGCGCGTGTGGGTGCTCCTCCTGTGGCTCTCCATCTGCGCCGCGCTCTTCGCCTGGAAGTTCACC
CAGTACCGCCGCCGCTACGTCTTCCACGTGATGGGCTACTGCGTCTGCGTCGCGAAGGGCGGCGCCGAGACGCTCAAGTTCAACATGGCGCTCATCCTCCTGCCCGTCTGCCGGAACACC
ATCACCTGGCTCCGCAACCGGACCACCGCCGTGGCGCGCGTCGTCCCCTTCGACGACAGCCTCAACTTCCACAAGGTGGTCGCCGTCGGGATCACCGTGGGCGCCGCGCTCCACATCGTC
TCCCACCTGACGTGCGACTTCCCGCGGCTCCTCCACGCCACCGACGAGGCGTACGCGCCGCTGGGGCAGTACTTCGGGACGCGGCGGCCGCCGGACTACTGGTGGTTCGTGAAGGGCACG
GAGGGGTGGACGGGGCTGGTGATGCTGGTGCTCATGGCGGTGGCGTTCACGCTGGCGACGCCGTGGTTCAGGAGAGGGAGGGTGGCGCTGCCGGGCCCCGTGCTCAGGCGGCTCACCGGG
TTCAACGCGTTCTGGTACTCGCACCACTGCTTCGTGGCGGTGTACGCGCTGCTCGTCGTGCACGGGCAGTACCTGTACCTGACGCACAAGTGGTACAAGAAGTCGACGTGGATGTACCTG
GCCGTGCCCGTGGCGCTGTACGCGTGCGAGAGGCTGACGAGGGCGCTCAGGTCCAGTGTCCGCCCCGTGAAGATACTCAAGGTGGCGGTTTACCCTGGGAACGTCCTGTCGCTGCATTTC
TCCAAGCCGCAGGGGTTTCGGTACAGGAGTGGACAGTACATCTTCGTCAACTGCGCCGCCGTCTCGCCGTTCCAGTGGCACCCGTTCTCCATCACGTCGGCACCACAGGACGACTACGTG
AGCGTGCACATCAGGACGCTGGGTGACTGGACACGCGAGCTCAAGAACGTCTTCTCGAGGGTGTGCCGGCCGCCGACGGAGGGCAAGAGCGGGCTGCTCCGCGCCGAGTACGACCGCGAC
GGCAGCGCCATGGCCAACCCCAGCTTCCCCAAGGTGCTGATCGACGGCCCCTACGGCGCGCCGGCGCAGGACTACAAGCAGTACGACATCGTGCTTCTCGTCGGGCTGGGCATCGGCGCC
ACGCCCATGATCTCCATCATCAAGGACATCATCAACAACATGAAGCAGCCGGACGGCGACCTGGAAGCCGGCGCCGGCGCCGACACGTCGGCGTCCTCCATGGCGTCGTCGTTCCGCACG
CGGCGCGCCTACTTCTACTGGGTGACCCGGGAGCAGGGCTCCTTCGAGTGGTTCCGCGGCGTCATGGACGAGGTGGCCGAGACGGACAAGAAGGGCGTCATCGAGCTCCACAACTACTGC
ACCAGCGTGTACGAGGAAGGCGACGCCCGGTCGGCGCTCATCGCCATGCTCCAGTCGCTCAACCACGCCAAGCACGGCGTCGACGTCGTGTCCGGGACACGCGTCAAGACGCACTTCGCC
AGGCCCAACTGGCGCAACGTCTACAAGCGCATCGCCCTCAACCACCAGAACCAGCGCGTCGGAGTGTTCTATTGTGGTGCTCCGGTGCTGACAAAGGAGCTGCGCGAGCTCGCGCAGGAT
TTCTCGCGGAAAACCAACACCAAGTTCGAGTTCCACAAGGAGAACTTCTAA

Retrieve as FASTA