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Entry information : RcAPx03 (29781.m000013)
Entry ID 9329
Creation 2011-06-30 (Qiang Li)
Last sequence changes 2012-01-04 (Qiang LI)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: RcAPx03 (29781.m000013)
Name (synonym) RcAPx03 (29781.m000013)
Class Ascorbate peroxidase     [Orthogroup: APx001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcAPx03
start..stop		 S start..stop
PtAPx03 423 6.3e-153 1..223 1..223
PbAPx02 423 6.3e-153 1..223 1..223
EgAPx05 422 1.82e-152 1..223 1..223
QshAPx01 419 3.88e-151 1..223 1..223
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 15333..15451 117 N° 2 15538..15712 173 N° 3 15814..15879 64 N° 4 16470..16518 47
N° 5 16610..16692 81 N° 6 16786..16865 78 N° 7 16978..17074 95  
join(15333..15451,15538..15712,15814..15879,16470..16518,16610..16692,16786..168 65,16978..17074)


exon

Literature and cross-references RcAPx03 (29781.m000013)
DNA ref. Phytozome 12:   29781 (15333..17074)
Protein sequence: RcAPx03 (29781.m000013)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   223
PWM (Da):   %s   24370.58 Transmb domain:   %s   i163-185o225-247i
PI (pH):   %s   6.96
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTKNYPKVSEEYQKAVDKAKKKLRGLIAEKNCAPIMLRLAWHSAGTYDVKTKTGGPFGTMRYPAELAHGANNGLDIALRLIDPIKEQFPILSHADFYLAGVVAVEITGGPEIPFHPGRED
KPEPPPEGRLPDATKGSGHLRDVFGHMGLSDQDIVALSGGHTGRCHKERSGFEGPWTSNPLIFDNSYFKELLSGEKEGLLKLPSDLALLSDPVFRPFVEK

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction from phytozome (3' end is missing due to NNNNNNN in DNA). 1 EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACTAAGAACTATCCAAAAGTAAGCGAAGAGTACCAGAAGGCCGTTGATAAGGCGAAGAAGAAGCTCAGAGGTTTAATCGCTGAAAAGAACTGCGCTCCTATTATGCTTCGTCTCGCG
CGTATGTTTCTTCTCTCTTTCTAATACATAAAAGTTGTATTTTGTATATTTTTGAATTGGCTGGTTGGGAAACGGCGTCGTCTGCAGTTGGCATTCAGCTGGAACCTACGATGTGAAGAC
TAAGACCGGTGGACCATTTGGAACCATGAGGTACCCAGCGGAGTTGGCTCATGGTGCTAATAATGGGCTTGATATTGCTCTTAGACTTATTGACCCCATTAAGGAGCAGTTCCCAATCCT
CTCTCATGCTGATTTCTATCAGAGGTAATATAATATATAATTAATTTATCTGATACTTATGTTTGATCGATTTATATTCTTTTCGTAAATTTTGTTGACTTGATTAATTTTATTTTTGTA
TGTAGCTTGCTGGTGTTGTTGCCGTGGAGATCACTGGTGGACCTGAGATCCCATTCCACCCAGGAAGAGAGAGGTCATTAGTTATTCCTTATTTTTTTTAGTAAAAAAAAAGAGAAATTA
GTTTAAATGTAATGGAGTAACCAGTAGTCGAAATTTTGGTTACTTATGGATTTATTAGCACAATTTATTTATTCACAACTGTGGGCATAACTGTGCTGATATGCTTTATGGGGCGTATTT
GGACACCCTTTAATTTAGCTACCAGCTTTTGGTTTGGCCGTCCATTTTGACTTGGTGGTATTAGAAAAAAGTGGGGCCCAAGTTGCGTCACATTTGTTTGGTGCTCTTCAGTATGGTAGT
CAATAAATGATTGCTTTGCCAGGTAGTGGACTATATTTGTTTTTAACAACTTGCTACTTCATTTGTTACAACAATTTTTTTTAACAAAAAAAATGCCATATTGTTTTGCTTAATTAAGAA
TGATTAATTGCTTGATAAACATTGATGTTTGAATTCATCTAATGTGTTTACATTTATAATTTCTGGCTTAGCGAATGTCTTGTAAAAATGTTATGGATAACTCGAGTTGTCCGATGTCAA
TGTTTTTTGGTTGTGGATATTGTTTTTCAGCTGGTACTAATAATAACTATCTCATTATCTCAGGACAAGCCTGAGCCACCTCCAGAGGGTCGCCTTCCTGATGCTACCAAGGGGGTTAGT
TTGCTATACCATTATGAATTGATTATCGATTAATTTTTTAGAAGCATATTTTGGGTTTCCTGAACACAGGAATTGTTCTTTGCAGGTTCTGGTCACTTGAGGGATGTTTTTGGCCACATG
GGTCTCAGCGACCAGGATATTGTTGCTCTCTCTGGTGGCCACACCCTGTGGTTGGTGTCAAAATCTTGACTTTTACCTTGTTCTCTATGTGTGCTTATGTGTTTGTTTTACTGATTCCTA
CTCGTCTGTTGGGATGATTACAGGGTAGGTGCCACAAAGAGCGCTCTGGTTTTGAGGGTCCATGGACTTCTAACCCACTCATCTTTGATAACTCCTACTTCAAAAGTGAGTATCTGTCTA
CATTCAAGGCGTGGTTATTCTGTTCATAGTTCTTAGAAACATTTTTTATTATGGTTAAGATAACTTACTGACATTGTACATTCTTAAATTTTGTCAGGGAGCTCTTGAGTGGAGAGAAGG
AGGGGCTTTTGAAATTGCCATCTGACTTGGCTCTTCTTTCTGACCCTGTGTTCCGCCCATTTGTTGAAAAATAT

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACTAAGAACTATCCAAAAGTAAGCGAAGAGTACCAGAAGGCCGTTGATAAGGCGAAGAAGAAGCTCAGAGGTTTAATCGCTGAAAAGAACTGCGCTCCTATTATGCTTCGTCTCGCT
TGGCATTCAGCTGGAACCTACGATGTGAAGACTAAGACCGGTGGACCATTTGGAACCATGAGGTACCCAGCGGAGTTGGCTCATGGTGCTAATAATGGGCTTGATATTGCTCTTAGACTT
ATTGACCCCATTAAGGAGCAGTTCCCAATCCTCTCTCATGCTGATTTCTATCAGCTTGCTGGTGTTGTTGCCGTGGAGATCACTGGTGGACCTGAGATCCCATTCCACCCAGGAAGAGAG
GACAAGCCTGAGCCACCTCCAGAGGGTCGCCTTCCTGATGCTACCAAGGGTTCTGGTCACTTGAGGGATGTTTTTGGCCACATGGGTCTCAGCGACCAGGATATTGTTGCTCTCTCTGGT
GGCCACACCCTGGGTAGGTGCCACAAAGAGCGCTCTGGTTTTGAGGGTCCATGGACTTCTAACCCACTCATCTTTGATAACTCCTACTTCAAGGAGCTCTTGAGTGGAGAGAAGGAGGGG
CTTTTGAAATTGCCATCTGACTTGGCTCTTCTTTCTGACCCTGTGTTCCGCCCATTTGTTGAAAAATAT

Retrieve as FASTA