Entry information : RcPrx28 (29764.m000743)
Entry ID 9356
Creation 2011-06-30 (Qiang Li)
Last sequence changes 2012-01-04 (Qiang Li)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-12-02 (Qiang Li)
Peroxidase information: RcPrx28 (29764.m000743)
Name (synonym) RcPrx28 (29764.m000743)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcPrx28
start..stop
S start..stop
MePrx120 180 7.52e-58 2..110 213..331
PnPrx90 170 7.25e-54 1..110 211..329
PtPrx90 169 1.92e-53 1..110 212..330
NtPrx69-1B 165 4.54e-52 1..110 211..329
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9356' 'complement(join(110741..110988,111015..111096))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 111015..111096 80 N° 2 110741..110988 246  
complement(join(110741..110988,111015..111096))


exon

Literature and cross-references RcPrx28 (29764.m000743)
DNA ref. Phytozome 12:   29764 (111096..110741)
Protein sequence: RcPrx28 (29764.m000743)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   110
PWM (Da):   %s   11761.82  
PI (pH):   %s   8.73
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
NFSGTGSQDPSLDATYVARLKQQCPQGMNPSSPTTTDAGYYIDVQANKGLFTSDQTLLTNPITVSQVNQNARNPNLWKTKFAAAMVKMGQLDVLTGTAGEIRTNCRVIN

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction from phytozome (Just 3' end).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AACTTCAGCGGAACAGGTAGTCAGGACCCAAGCTTAGATGCAACATATGTAGCCAGATTGAAGCAACAGTGCCCACAAGGTAGCACAAACCCTAATTAGTGGTTCCAATGTGAATCCTTC
AAGTCCAACCACAACAGATGCAGGCTACTACATAGATGTCCAAGCAAACAAAGGCTTATTCACTTCAGACCAAACTCTCTTGACAAACCCAATAACAGTAAGCCAAGTTAATCAAAATGC
AAGGAACCCCAATCTTTGGAAGACCAAATTTGCTGCAGCAATGGTGAAGATGGGTCAACTTGATGTTTTAACGGGTACTGCTGGAGAAATTCGAACAAATTGTAGAGTAATCAACAGC

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AACTTCAGCGGAACAGGTAGTCAGGACCCAAGCTTAGATGCAACATATGTAGCCAGATTGAAGCAACAGTGCCCACAAGGTATGAATCCTTCAAGTCCAACCACAACAGATGCAGGCTAC
TACATAGATGTCCAAGCAAACAAAGGCTTATTCACTTCAGACCAAACTCTCTTGACAAACCCAATAACAGTAAGCCAAGTTAATCAAAATGCAAGGAACCCCAATCTTTGGAAGACCAAA
TTTGCTGCAGCAATGGTGAAGATGGGTCAACTTGATGTTTTAACGGGTACTGCTGGAGAAATTCGAACAAATTGTAGAGTAATCAACAGC

Retrieve as FASTA