View Redoxidase 9410

Entry information : VvAPx04 (GSVIVT01018740001)

Entry ID	9410
Creation	2011-07-01 (Qiang Li)
Last sequence changes	2011-10-03 (Qiang Li)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-01-05 (Qiang LI)

Peroxidase information: VvAPx04 (GSVIVT01018740001)

Name (synonym)

VvAPx04 (GSVIVT01018740001)

Class

Ascorbate peroxidase [Orthogroup: APx003]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Vitaceae Vitis

Organism

Vitis vinifera (Grape) [TaxId: 29760 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	VvAPx04 start..stop	S start..stop
CroAPx03	392	1.18e-138	19..298	5..284
PtAPx05	389	1.61e-137	20..298	5..281
LeAPx06	382	1.43e-134	21..298	6..281
HaAPx06	380	1.06e-133	20..298	7..282

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9410' 'complement(join(20281250..20281459,20281564..20281642,20281727..20281750,20281852..20281931,20282024..20282106,20282386..20282434,20282512..20282577,20282724..20282773,20282994..20283118,20283545..20283702))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	20283545..20283702	156	N° 2	20282994..20283118	123	N° 3	20282724..20282773	48	N° 4	20282512..20282577	64
N° 5	20282386..20282434	47	N° 6	20282024..20282106	81	N° 7	20281852..20281931	78	N° 8	20281727..20281750	22
N° 9	20281564..20281642	77	N° 10	20281250..20281459	208
complement(join(20281250..20281459,20281564..20281642,20281727..20281750,2028185 2..20281931,20282024..20282106,20282386..20282434,20282512..20282577,20282724..2 0282773,20282994..20283118,20283545..20283702))

Literature and cross-references VvAPx04 (GSVIVT01018740001)

DNA ref.	Phytozome 12: chr4 (20283702..20281250)

Protein sequence: VvAPx04 (GSVIVT01018740001)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	307
PWM (Da):	33983.31	Transmb domain:	o281-298i
PI (pH):	9.17

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MEVQASTSASAPAPTPAPLVVNAEYYKEIERARRYLRALISSKNCAPMMLRLAFHDAGTYDALTKTGGPNGSIRNPQELNHSANRGLETAVDLCEKVKRKHPCITYADLYQLAGVVAVEV
TGGPTIHFVPGRQDSLSSPKEGLLPDANKGADHLRSVFNRMGLEDKDIVALSGGHTLGGAHKQVSGFDGKWTEEPWKFDNSYFKELLKSSTKRLFIFSTDQALIKDPKFLEYVMLYEQDE
EAFFRDYAASHKKLSELGFVPPTWTSRVITAVKNSSTMAKTAAGVAFATTAIAITFYYRQRSQRKEE*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Incorrect prediction from phytozome (Extra 5' end has been removed).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAAGTCCAAGCCTCAACCTCAGCCTCTGCACCAGCACCAACTCCAGCACCACTAGTTGTAAATGCAGAATACTACAAAGAAATCGAAAGGGCTCGTAGATACCTCCGTGCTCTCATT
TCCAGCAAAAACTGTGCACCCATGATGCTCCGTCTAGCGTAGTGTCCCTTAAGTTTAATTTATGCTTCTTTTTCATTTTCCCTGCATTTCATTTCATTTAGTAAATGTTAGAACTGACAT
TTCGAAGGGAGGGGAGAAAACATAAGTGGTTGCATTTCAATAGACGGGGAAGATAAGATGAAAATTTCAGAAAAATTAGGAAAAAAAAGAAAAAGGCTTTTCTAGGTGTTATGACTTATG
GCGTGTCAGAAATACGGCCATGAACAGGCCATGAACAAAACGATTCATACATGTGTGTGTGTTTTTTGCAAGGTTCAAATTAACGGAGACTTAGTATTTGGCATGTATGGGGGGGAGGAT
CGTGAGCTGATTTTTTGCATTCTGGCTCTATTGGATTTTAAAGTAATTTAGCTTTAATGCATGAGGGTTTAATGATCGGAAGCTAAATAGCATTTTGTTTGCAGGTGTTTCATGATGCAG
GCACTTATGATGCTCTCACAAAGACAGGGGGCCCAAATGGCTCCATCAGAAACCCACAAGAGCTTAATCATTCTGCAAATAGGGGTTTGGAAACGGCAGTTGATCTTTGCGGTGAGATTC
ATTTTCCCTTTTGCCCTTGCACACTGGCAAAAGATTTGTCCCTCCCCTTTTTTTTTTTTTGCTTGTATTGTAATCAGACTCCTTTTAATGAGGTTCAGTGCCGAGATAGTATGATTGGGA
CTTCATCCCACCACAACTCTCAGTTTTTCCTACTTGAAATTGAAATACTATTTTTTTCTTCTAATGGGCTCTGGTTCTGCTCTGATGTCAGAGAGAAGGTGAAAAGGAAGCATCCTTGCA
TTACATATGCTGACCTTTACCAGGTGACTCTTGTTTCAGAAATTAACTGTTCTGTGATTTAATTTGAATTCATTGAGAAGCTAAGGATAAAAACAAGCTCTGGTTTGCATCATCTTTGCA
AGTGGATGCCGGTGTGGTCGCTTTCCTGACTCCTTTGGGGTTTTGTCAGCTCTTGCTGGTGTTGTTGCAGTTGAGGTTACTGGAGGCCCCACTATTCACTTCGTCCCTGGTAGACAGGTT
GGTTCATGGAGGAAGCTTTTGATCACCTTTCTCAAATATTACTCCTAATTTTTTCCCCCCTGTTTTTCAACCAGGAGACTCTTTGTCTTCACCAAAAGAAGGGCTCCTCCCAGATGCTAA
CAAAGGTTCCCATTCTGTTTTCTTTATGCTCTCTGGCCTTGTTTATGGAAAAGAAGTCATTTTCCTATTCTGCTCTATAACTCACAGATAATGCATAGAGACTTGAACCTTATCGTTTGT
CGAATTCTGTCATTTCACCCCTTGGTCCCCTCTCTAGCTTTTCAGCTGTGCTCCTTCTACAAATTGTTTCTTGGTTGTTATGCATCAGAAATCAGAGCTCTCTTATACTTCCCATATAAG
ACCAAGCAGAAAATTTACATTACTCTTATTAAATTTTGTTGCAGGTGTGCTGACCATTTAAGGTCGGTCTTTAACCGGATGGGTCTTGAGGACAAGGATATTGTGGCCCTCTCCGGAGGT
CATACATTGGTAACTTCCTCCACAGATCTGCAGCTATCTTTAAAAAGTTCTTTCAGCATCCACAAATATGCATGTAGTTTTTGTTTGGTTTGGTGTTGTAGGGGGAGGGGCACATAAGCA
AGTTTCAGGCTTTGATGGCAAGTGGACAGAGGAGCCCTGGAAGTTCGACAATTCGTATTTCAAGTAAGGTTTCATTTGAGAATTCATTGATTGGAACGCATATAAATGCAGCAATGTTTC
AATTATATATGATGGCTATATGTTATGATTAATATTGTAATCAGGGGGAGCTTTTGAAATCATCAACCAAGTTTCCTACACCTAGTAACCCTCCAACAGGGTATTCACAGCAGAAACCTT
CTTCTTCAGCTGCGGGCGAGGATTCAACAGGGAGGCGCGATTGTTTATATTTTCCACAGACCAAGCATTAATAAAGGATCCTAAATTCCTAGAATATGTTATGTTGTATGAACAGGTAAT
GTAGTATTTTGCTGGAACCTTCGTGGATGTTCACATAGTCTCATGCAGTCTCTTGTAACCCTTTACTGTTTTTCTTATCATATTTCTGGTACATGGCAGGAGATGAGGAGGCTTTCTTCA
GAGATTATGCGGCATCCCACAAGAAGCTTTCGGAGCTAGGGTTTGTTCCACCTACATGGACTTCCAGGGTAATCACAGCTGTGAAGAACAGTTCAACCATGGCAAAAACTGCTGCAGGAG
TTGCTTTTGCGACAACTGCTATAGCCATTACTTTCTACTATAGACAAAGAAGTCAAAGGAAAGAGGAGTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA