View Redoxidase 9591

Entry information : SiPrx[P]103 (Si024400m)

Entry ID	9591
Creation	2011-07-03 (Qiang Li)
Last sequence changes	2011-12-12 (Qiang Li)
Sequence status	theoretical translation / pseudogene
Reviewer	Not yet reviewed
Last annotation changes	2011-12-07 (Qiang Li)

Peroxidase information: SiPrx[P]103 (Si024400m)

Name (synonym)

SiPrx[P]103 (Si024400m)

Class

Class III peroxidase [Orthogroup: Prx030]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria

Organism

Setaria italica [TaxId: 4555 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SiPrx[P]103 start..stop	S start..stop
SiPrx68	281	8.25e-94	1..225	1..213
SiPrx68	110	4.89e-28	243..312	297..359
SiPrx[P]179	246	4.47e-83	140..287	1..148
SbPrx103	250	1.89e-81	1..225	1..212
SbPrx103	90	1.15e-20	243..311	302..371
ZmPrx32	236	6.27e-76	1..225	1..210
ZmPrx32	97	3.98e-23	243..311	300..368

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	11034014..11034230	215	N° 2	11033728..11033909	180	N° 3	11033251..11033654	402
complement(join(11033251..11033654,11033728..11033909,11034014..11034230))

Literature and cross-references SiPrx[P]103 (Si024400m)

DNA ref.	Phytozome 12: scaffold_3 (11034230..11033251)

Protein sequence: SiPrx[P]103 (Si024400m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	312 (281)
PWM (Da):	32459.62 (29351.0)	Transmb domain:	i12-34o
PI (pH):	8.5 (8.51)	Peptide Signal:	cut: 32 range:32-312

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAYSTTTVALQVVALLLTLTIAASTATTGSAAPVNTSCVTGSAGATVSIGYSGARASAGAGVSLGAGVYRATCPRAEEIVRAAVERAVAADPRMAASIIRLHLHDCFVNVRCLFARLDPG
LRRLRAPGRQAALLHRREDANSLRDFEVIDAIKAELERECPETVSCADLLAIAARDSVVVSGGPSWEVEAGRKDGRTASLQGANVNLPAPTSGVATLRAEVQERRPLRQGHGRPLRRAHH
RQVTPSDQAPSGAAVPGAEDDDGVAGLVAAYAFDASVFFQDFAESMLRMGRRAPGGGGGEVRTNCRVVNSSS*

Retrieve as FASTA

Remarks

Pseudogene from genomic. Incorrect prediction from phytozome (Gaps in frame).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GCATTGGTTATAGCGGGGCGAGGGCCAGCGCCGGCGCCGGCGTTTCTCTCGGTGCCGGCGTGTACCGCGCCACCTGCCCCCGCGCCGAGGAGATCGTCCGCGCCGCCGTCGAGAGGGCCG
TCGCCGCCGACCCGCGCATGGCGGCGTCCATCATCCGCCTCCATTTACACGACTGCTTCGTCAACGTACGCTGTTTGTTCGCCCGGCTGGATCCAGGTCCGATCATTGACACGTAGTACG
TGTCTAGATGCAACAATGGTGTGTGTGTCCTGCAAGCTGCAATGCGGTGATAGTTCATTCGTTTCTCCTTTTCTCATCAGGGCGCTGCGACGGCTCCGTGCTCCTGGACGACAAGCCGCC
CTTCTTCATCGGCGAGAAGACGCCAACTCGCTCAGGGACTTCGAGGTCATCGACGCCATCAAGGCTGAGCTGGAGCGAGAGTGCCCGGAGACAGTCTCCTGCGCCGACCTCCTCGCCATC
GCTGCCCGTGACTCCGTCGTGGTGGTAATAATCACATACATGCATGCAATTATCAACCACAAGCATCTAGATGATCACTGATCGCCGGTGCATTCAGTCGCGGGCGGGCCGAGCTGGGAG
GTAGAGGCCGGCCGGAAGGACGGCCGCACGGCGAGCCTTCAGGGCGCCAACGTCAACCTCCCGGCGCCGACGTCCGGCGTCGCTACCCTTCGTGCAGAAGTTCAGGAACGTCGGCCTCTC
CGCCAAGGACATGGTCGCCCTCTCAGGCGCGCACACCATCGGCAAGTCACGGTGTGCAGNCCGTCCGACCAGGCGCCGTCAGGCGCAGCCGTGCCCGGGGCAGAGGACGACGACGGAGTC
GCCGGCCTTGTGGCCGCCTACGCGTTCGACGCCTCCGTCTTCTTCCAGGACTTTGCGGAGTCCATGCTGCGTATGGGGAGGCGCGCGCCAGGCGGCGGCGGCGGCGAGGTCCGCACGAAC
TGCCGGGTGGTGAACAGCTCGAGC

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GCATTGGTTATAGCGGGGCGAGGGCCAGCGCCGGCGCCGGCGTTTCTCTCGGTGCCGGCGTGTACCGCGCCACCTGCCCCCGCGCCGAGGAGATCGTCCGCGCCGCCGTCGAGAGGGCCG
TCGCCGCCGACCCGCGCATGGCGGCGTCCATCATCCGCCTCCATTTACACGACTGCTTCGTCAACGTACGCTGTTTGTTCGCCCGGCTGGATCCAGGGCTGCGACGGCTCCGTGCTCCTG
GACGACAAGCCGCCCTTCTTCATCGGCGAGAAGACGCCAACTCGCTCAGGGACTTCGAGGTCATCGACGCCATCAAGGCTGAGCTGGAGCGAGAGTGCCCGGAGACAGTCTCCTGCGCCG
ACCTCCTCGCCATCGCTGCCCGTGACTCCGTCGTGGTGGCGGGCGGGCCGAGCTGGGAGGTAGAGGCCGGCCGGAAGGACGGCCGCACGGCGAGCCTTCAGGGCGCCAACGTCAACCTCC
CGGCGCCGACGTCCGGCGTCGCTACCCTTCGTGCAGAAGTTCAGGAACGTCGGCCTCTCCGCCAAGGACATGGTCGCCCTCTCAGGCGCGCACACCATCGGCAAGTCACGGTGTGCAGNC
CGTCCGACCAGGCGCCGTCAGGCGCAGCCGTGCCCGGGGCAGAGGACGACGACGGAGTCGCCGGCCTTGTGGCCGCCTACGCGTTCGACGCCTCCGTCTTCTTCCAGGACTTTGCGGAGT
CCATGCTGCGTATGGGGAGGCGCGCGCCAGGCGGCGGCGGCGGCGAGGTCCGCACGAACTGCCGGGTGGTGAACAGCTCGAGC

Retrieve as FASTA