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Entry information : TvLiP08 (LiP8)
Entry ID 9594
Creation 2011-10-05 (Christophe Dunand)
Last sequence changes 2011-10-05 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-03-27 (Catherine Mathe (Scipio))
Peroxidase information: TvLiP08 (LiP8)
Name (synonym) TvLiP08 (LiP8)
Class Lignin peroxidase    [Orthogroup: LiP002]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Trametes
Organism Trametes versicolor (Coriolus versicolor )    [TaxId: 5325 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TvLiP08
start..stop		 S start..stop
TvLiP12_PRL572 717 0 1..364 1..364
TvLiP12 717 0 1..364 1..364
TvLiP04 626 0 1..364 1..364
TvLiP 626 0 1..364 1..370
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9594' 'join(728533..728593,728652..728859,728918..729052,729106..729652,729719..729793,729852..729920)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 728533..728593 59 N° 2 728652..728859 206 N° 3 728918..729052 133 N° 4 729106..729652 545
N° 5 729719..729793 73 N° 6 729852..729920 67  
join(728533..728593,728652..728859,728918..729052,729106..729652,729719..729793, 729852..729920)


exon

Literature and cross-references TvLiP08 (LiP8)
DNA ref. JGI genome:   scaffold_12 (728533..729920)
Protein sequence: TvLiP08 (LiP8)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   364 (343)
PWM (Da):   %s   38537.93 (36501.9) Transmb domain:   %s   i7-25o
PI (pH):   %s   4.22 (4.18) Peptide Signal:   %s   cut: 22 range:22-364
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGFKSLLSVVSAAAALQGAYAALTRRVACPDGVNTATNAACCQLF
AVREDLQQNLFHGGLCTAEAHESLRLTFHDAIAISPALEAQGIFGGGGADGSIAIFPEIETNFHPNIGLDEIIELQKPFIARHNISVADFIQFAGAIGASNCAGAPQLAAFVGRNDATQPAPDGLVPEPFHTPDQIFDRLADAS
QGEFDPILTVWLLTAHTVAAANDVDPTKSGLPFDSTPELWDTQFFLETQLRGTSFPGSGGNQGEVESPLAGEIRLQSDHTIARDSRTACEWQSFVDNQPKAQQMFQFVFHDLSIFGQDIN
QLVDCTEVPIPAAPQGHTHFPAGLSNADIEQACAETPFPTFPTDPGPKTAVAPV*

Retrieve as FASTA  
Remarks Complete sequence from genomic (5 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTTTCAAGTCTCTTCTCTCCGTCGTCTCTGCCGCTGCAGCGCTCCAGGGAGCATACGCGGTGCGTAGGACGCGGTGGATGGCTGTCAACAGTGATCTGACGCATATCTATCTTCTA
GCCGCATTAACCCGCCGCGTCGCTTGCCCCGACGGCGTGAACACCGCTACCAACGCGGCGTGCTGCCAGCTCTTCGCCGTCCGCGAGGACCTCCAGCAGAACCTGTTCCACGGCGGTCTC
TGCACGGCTGAGGCGCACGAGTCTCTCCGCCTGACCTTCCACGACGCCATCGCTATCTCCCCCGCCCTCGAGGCCCAGGGCATCTTCGGGGGTACGCTAAGCAAATTTGTGCACTTAGCC
AACATCGTTAACCAGGACGCGCTGCTCAGTGGCGGCGGTGCCGACGGCTCCATCGCGATCTTCCCCGAGATCGAGACCAACTTCCACCCCAACATCGGTCTCGACGAGATCATTGAGCTC
CAGAAGCCGTTCATCGCCCGTCACAACATCTCCGTTGCCGACTTTTGTAAGTCCCCGCAGTGAAGCAACGATGGCCTTTGTACTAATTCCTCGGCGCAGCATCCAATTCGCTGGTGCCAT
CGGTGCCTCCAACTGCGCGGGCGCGCCCCAGCTCGCCGCCTTCGTCGGCCGCAACGACGCGACACAGCCCGCGCCCGACGGGCTCGTCCCCGAGCCGTTCCACACGCCGGACCAGATCTT
CGACCGCCTCGCGGACGCGTCGCAGGGCGAGTTCGACCCGATCCTGACCGTGTGGCTGCTCACCGCGCACACCGTCGCGGCCGCGAACGACGTCGACCCGACGAAGTCCGGGCTGCCGTT
CGACTCCACCCCAGAGCTCTGGGACACGCAGTTCTTCCTCGAGACGCAGCTGCGCGGGACGAGCTTCCCCGGGTCTGGGGGGAACCAGGGCGAGGTCGAGAGTCCCCTTGCTGGGGAGAT
CCGCCTGCAGAGCGACCACACGATCGCGCGCGACTCGCGCACGGCGTGCGAGTGGCAGTCGTTTGTCGACAACCAGCCGAAGGCGCAGCAGATGTTCCAGTTCGTGTTCCACGATTTGTC
GATCTTCGGCCAGGACATCAACCAGCTCGTTGACTGCACGGAAGTCTCGTACGTCGCCTCGTTCTACTGTGCCAGAGTACCCCTTGCGCAGGTCACTAAACGCTATCTGGATAGGTCCCC
ATCCCCGCGGCGCCGCAGGGCCACACGCACTTCCCCGCCGGCCTGAGCAACGCTGACATCGAGCAGGCTCTGTGAGTACACTCCGCGCACACGCTCTCCTTACCTTTCGACTGACACGTT
CACCCATAGTGCGCCGAGACTCCCTTCCCGACCTTCCCCACCGACCCCGGACCCAAGACCGCCGTCGCCCCCGTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTTTCAAGTCTCTTCTCTCCGTCGTCTCTGCCGCTGCAGCGCTCCAGGGAGCATACGCCGCATTAACCCGCCGCGTCGCTTGCCCCGACGGCGTGAACACCGCTACCAACGCGGCG
TGCTGCCAGCTCTTCGCCGTCCGCGAGGACCTCCAGCAGAACCTGTTCCACGGCGGTCTCTGCACGGCTGAGGCGCACGAGTCTCTCCGCCTGACCTTCCACGACGCCATCGCTATCTCC
CCCGCCCTCGAGGCCCAGGGCATCTTCGGTGGCGGCGGTGCCGACGGCTCCATCGCGATCTTCCCCGAGATCGAGACCAACTTCCACCCCAACATCGGTCTCGACGAGATCATTGAGCTC
CAGAAGCCGTTCATCGCCCGTCACAACATCTCCGTTGCCGACTTCATCCAATTCGCTGGTGCCATCGGTGCCTCCAACTGCGCGGGCGCGCCCCAGCTCGCCGCCTTCGTCGGCCGCAAC
GACGCGACACAGCCCGCGCCCGACGGGCTCGTCCCCGAGCCGTTCCACACGCCGGACCAGATCTTCGACCGCCTCGCGGACGCGTCGCAGGGCGAGTTCGACCCGATCCTGACCGTGTGG
CTGCTCACCGCGCACACCGTCGCGGCCGCGAACGACGTCGACCCGACGAAGTCCGGGCTGCCGTTCGACTCCACCCCAGAGCTCTGGGACACGCAGTTCTTCCTCGAGACGCAGCTGCGC
GGGACGAGCTTCCCCGGGTCTGGGGGGAACCAGGGCGAGGTCGAGAGTCCCCTTGCTGGGGAGATCCGCCTGCAGAGCGACCACACGATCGCGCGCGACTCGCGCACGGCGTGCGAGTGG
CAGTCGTTTGTCGACAACCAGCCGAAGGCGCAGCAGATGTTCCAGTTCGTGTTCCACGATTTGTCGATCTTCGGCCAGGACATCAACCAGCTCGTTGACTGCACGGAAGTCGTCCCCATC
CCCGCGGCGCCGCAGGGCCACACGCACTTCCCCGCCGGCCTGAGCAACGCTGACATCGAGCAGGCTTGCGCCGAGACTCCCTTCCCGACCTTCCCCACCGACCCCGGACCCAAGACCGCC
GTCGCCCCCGTGTAA

Retrieve as FASTA