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Entry information : PgigLiP01
Entry ID 9657
Creation 2011-11-08 (Christophe Dunand)
Last sequence changes 2011-11-08 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-03-28 (Christophe Dunand)
Peroxidase information: PgigLiP01
Name PgigLiP01
Class Lignin peroxidase    [Orthogroup: LiP001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Phanerochaetaceae Phlebiopsis
Organism Phlebiopsis gigantea    [TaxId: 82310 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PgigLiP01
start..stop		 S start..stop
PgigLiP02 640 0 1..363 1..363
PcLiP02_RP78 546 0 1..366 1..372
PcLiP05_BKMF1767 544 0 1..362 1..368
PcarLiP01 544 0 1..366 1..372
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 32175..32226 50 N° 2 31915..32122 206 N° 3 31641..31855 213 N° 4 31538..31579 40
N° 5 31411..31489 77 N° 6 31238..31363 124 N° 7 30896..31187 290 N° 8 30778..30842 63
N° 9 30704..30725 20  
complement(join(30704..30725,30778..30842,30896..31187,31238..31363,31411..31489 ,31538..31579,31641..31855,31915..32122,32175..32226))


exon

Literature and cross-references PgigLiP01
DNA ref. JGI genome:   scaffold_183 (32226..30704)
Protein sequence: PgigLiP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   366 (346)
PWM (Da):   %s   38606.91 (36599.8) Transmb domain:   %s   o20-42i89-111o126-148i161-183o
PI (pH):   %s   4.23 (4.14) Peptide Signal:   %s   cut: 21 range:21-366
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALKHLFITISAALVANAAAVSKRATCSTGQTVSNAACCAWFPVL
EDIQQNMFAGGQCNAEAHESLRLVFHDGIAISPAMEARGEFGGGGADGSIMLFDTIETAFHPNIGLDEIVNIQKPFVQKHGVNPADFIPFAGAVAVSNCPGAPEMQFFTGRKATQAAPDGLVPEPFHTVDQILARTNDAGGFDE
LETVWMLSAHSIAASNDVDPTVQGLPFDSTPEQFDGQFFLDTQLRGVLFPGSGGNQGEVESAIAGEIRLQSDHLIARDSRTACEWQSFVNNQTKLQDDFQFIFTAIATLGQDMDALVDCS
DVIPAPQPQNFGATRFPPGKTNADIEQCAATPFPTLATVPGLATSVARIPPPPGA

Retrieve as FASTA  
Remarks Complete sequence from genomic (8 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCACTCAAGCACCTTTTCATCACCATCTCCGCCGCCCTGGTCGCCAACGGTGAGCACTTCACTTGCTCCATAACGCGTATGCACTAACCTTCATGCACTAGCTCTGCCGCCGTCTCG
AAGCGCGCGACCTGCTCGACTGGCCAGACCGTCTCGAACGCAGCGTGCTGTGCATGGTTCCCAGTCCTCGAGGACATCCAGCAGAACATGTTTGCTGGTGGCCAGTGCAACGCCGAGGCG
CATGAGTCGCTCCGCCTCGTCTTCCACGACGGCATCGCCATCTCGCCCGCCATGGAGGCGCGCGGTGAGTTCGGGTGGGTTCTTTCCCCTTCCCTCGCGAATAGTTACGCGCTGACGTGG
GTGCGGACTGCAGCGCGGCGGCGGCGCGGACGGGAGTATCATGCTTTTCGACACGATCGAGACCGCGTTCCACCCCAACATCGGCCTCGACGAGATCGTCAACATCCAGAAGCCCTTCGT
GCAGAAGCACGGCGTGAACCCGGCTGATTTCATACCCTTTGCTGGCGCGGTCGCCGTCAGCAACTGCCCCGGTGCGCCCGAGATGCAGTTCTTCACCGGCCGCAAGATCGGTGAGCCACG
CGCAGAATTCCAGTCGGAATGCATGGCGGCTGCTGACACACGCGCATCTAGCCCCACACAGGCCGCGCCTGACGGTCTCGTCCCCGAGCCCTTCCGTACGTACTGCCCGCTCTGGTGTGG
CTGCCGCTGAAGATCCGCCGCAGACACACCGTCGACCAGATCCTCGCCCGCACGAACGACGCCGGCGGATTCGACGAGCTCGAGACCGTCTGGATGCTCTCTGCGTAAGTTCTGCGCCTT
TACACGGTGGGGGTGACCTTACTGCGTATAGCCCCACTCGATCGCTGCGTCCAACGACGTCGACCCGACCGTGCAGGGCCTGCCGTTCGACTCGACGCCGGAACAGTTTGACGGCCAGTT
CTTCCTCGACACGCAGCTGCGAGGCGTGCTATTCCCCGGGTAGGCCCTTGCCCATCCCCTCTGACACCAGACGCTGAGCGTGCATACAGCTCTCGGGAGGGAACCAAGGCGAGGTGGAGT
CAGCCATAGCGGGCGAGATCCGCCTGCAGAGCGACCACCTGATCGCGCGTGACTCGCGCACGGCTTGCGAGTGGCAGTCGTTTGTGAACAACCAGACGAAGCTGCAGGACGACTTCCAGT
TCATCTTCACCGCCATCGCGACGCTCGGCCAGGACATGGACGCCCTCGTCGACTGCTCCGACGTCATCCCCGCGCCACAGCCCCAGAACTTCGGCGCCACGCGCTTCCCCCCTGGCAAGA
CGAACGCCGACATTGAGCAGGCGGTGAGTGTGACGCGCCGTCGAGGAATCATGGGGTACTGACGCGAGCTTTGCAGTGTGCGCCGCGACGCCCTTCCCGACCCTCGCGACGGTACCCGGC
CTCGCGACCTCTGTCGCCCGCATGTGAGTGTGGTTCTTAGTCCGCAGCCGAGAGCGTAATCTTATGCGCCTACAGCCCCCTCCCCCTCCTGGTGCTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCACTCAAGCACCTTTTCATCACCATCTCCGCCGCCCTGGTCGCCAACGCTGCCGCCGTCTCGAAGCGCGCGACCTGCTCGACTGGCCAGACCGTCTCGAACGCAGCGTGCTGTGCA
TGGTTCCCAGTCCTCGAGGACATCCAGCAGAACATGTTTGCTGGTGGCCAGTGCAACGCCGAGGCGCATGAGTCGCTCCGCCTCGTCTTCCACGACGGCATCGCCATCTCGCCCGCCATG
GAGGCGCGCGGTGAGTTCGGCGGCGGCGGCGCGGACGGGAGTATCATGCTTTTCGACACGATCGAGACCGCGTTCCACCCCAACATCGGCCTCGACGAGATCGTCAACATCCAGAAGCCC
TTCGTGCAGAAGCACGGCGTGAACCCGGCTGATTTCATACCCTTTGCTGGCGCGGTCGCCGTCAGCAACTGCCCCGGTGCGCCCGAGATGCAGTTCTTCACCGGCCGCAAGATCGCCACA
CAGGCCGCGCCTGACGGTCTCGTCCCCGAGCCCTTCCACACCGTCGACCAGATCCTCGCCCGCACGAACGACGCCGGCGGATTCGACGAGCTCGAGACCGTCTGGATGCTCTCTGCCCAC
TCGATCGCTGCGTCCAACGACGTCGACCCGACCGTGCAGGGCCTGCCGTTCGACTCGACGCCGGAACAGTTTGACGGCCAGTTCTTCCTCGACACGCAGCTGCGAGGCGTGCTATTCCCC
GGCTCGGGAGGGAACCAAGGCGAGGTGGAGTCAGCCATAGCGGGCGAGATCCGCCTGCAGAGCGACCACCTGATCGCGCGTGACTCGCGCACGGCTTGCGAGTGGCAGTCGTTTGTGAAC
AACCAGACGAAGCTGCAGGACGACTTCCAGTTCATCTTCACCGCCATCGCGACGCTCGGCCAGGACATGGACGCCCTCGTCGACTGCTCCGACGTCATCCCCGCGCCACAGCCCCAGAAC
TTCGGCGCCACGCGCTTCCCCCCTGGCAAGACGAACGCCGACATTGAGCAGGCGTGCGCCGCGACGCCCTTCCCGACCCTCGCGACGGTACCCGGCCTCGCGACCTCTGTCGCCCGCATC
CCTCCCCCTCCTGGTGCTTAG

Retrieve as FASTA