Entry information : GmAPx[P]13
Entry ID 9672
Creation 2011-11-10 (Qiang Li (Scipio))
Last sequence changes 2011-12-14 (Qiang Li (Scipio))
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-12-02 (Qiang Li)
Peroxidase information: GmAPx[P]13
Name GmAPx[P]13
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]13
start..stop
S start..stop
GmAPx[P]15 121 1.37e-38 1..69 13..81
GmAPx[P]11 115 4.26e-36 1..69 32..100
GmAPx[P]24 102 4.8e-31 11..69 1..59
GmAPx[P]23 71 8.94e-19 29..69 1..41
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9672' 'complement(join(17430662..17430868))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 17430662..17430868 205  
complement(join(17430662..17430868))


exon

Literature and cross-references GmAPx[P]13
DNA ref. Phytozome 12:   Gm15 (17430868..17430662)
Protein sequence: GmAPx[P]13
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   68 (312)
PWM (Da):   %s   7260.74 (35157.8)  
PI (pH):   %s   5.52 (4.98) Peptide Signal:   %s   cut: 25 range:25-336
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

GPIGHRY*AF GATQGGVPYF ELRRFLPGDD FFVFGVCALN DVFVLAQLAS VVAVEVTGGP EVPFHPRRE 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Just short PS with stops in it). No prediction from phytozome.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGACCCATCG GACATCGCTA TTAGGCTTTT GGAGCCACTC AAGGCGGAGT TCCCTATTTT GAGCTACGCC GATTTCTACC CGGTGATGAT TTTTTTGTCT TTGGTGTTTG TGCGCTTAAT 
GATGTGTTTG TGTTGGCGCA GTTGGCTAGC GTTGTTGCCG TTGAGGTCAC GGGTGGACCT GAAGTTCCAT TCCACCCTAG AAGAGAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGACCCATCG GACATCGCTA TTAGGCTTTT GGAGCCACTC AAGGCGGAGT TCCCTATTTT GAGCTACGCC GATTTCTACC CGGTGATGAT TTTTTTGTCT TTGGTGTTTG TGCGCTTAAT 
GATGTGTTTG TGTTGGCGCA GTTGGCTAGC GTTGTTGCCG TTGAGGTCAC GGGTGGACCT GAAGTTCCAT TCCACCCTAG AAGAGAG 

Retrieve as FASTA