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Entry information : VcaGPx01
Entry ID 9741
Creation 2011-11-17 (Passaia Gisèle)
Last sequence changes 2011-11-17 (Passaia Gisèle)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-11-18 (Christophe Dunand)
Peroxidase information: VcaGPx01
Name VcaGPx01
Class Fungi-Bacteria glutathione peroxidase    [Orthogroup: Gpx3001]
Taxonomy Eukaryota Viridiplantae Chlorophyta Chlorophyceae Volvocaceae Volvox
Organism Volvox carteri    [TaxId: 3067 ]
Cellular localisation N/D
Tissue type N/D
Inducer Oxidative stress
Repressor N/D
Best BLASTp hits
Perox score E-value VcaGPx01
start..stop		 S start..stop
CreGPx03 304 6.18e-107 2..200 1..200
SobGPx01 245 1.52e-83 16..200 15..199
SpraGPx01 207 2.67e-68 46..200 73..228
PtaGPx04 199 4.64e-66 34..201 2..171
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..156 154 N° 2 326..460 133 N° 3 769..910 140 N° 4 1138..1210 71
N° 5 1652..1690 37 N° 6 1910..1973 62  
join(1..156,326..460,769..910,1138..1210,1652..1690,1910..1973)


exon

Literature and cross-references VcaGPx01
Literature Prochnik SE, Umen J, Nedelcu AM, Hallmann A, Miller SM, Nishii I, Ferris P, Kuo A, Mitros T, Fritz-Laylin LK, Hellsten U, Chapman J, Simakov O, Rensing SA, Terry A, Pangilinan J, Kapitonov V, Jurka J, Salamov A, Shapiro H, Schmutz J, Grimwood J, Lindquist E, Lucas S, Grigoriev IV, Schmitt R, Kirk D, Rokhsar DS. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.Science. 2010 Jul 9;329(5988):223-6.
DNA ref. GenBank:   XM_002950404
Cluster/Prediction ref. UniGene:   Vca.5783
Protein sequence: VcaGPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   202 (168)
PWM (Da):   %s   21802.23 (18985.7) Transmb domain:   %s   i19-36o
PI (pH):   %s   10.29 (9.06) Peptide Signal:   %s   cut: 20 range:20-187
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MMLQSRIHARPATRIAARPARHHALKTQALFGFGGAKTAEPSTSEFYSFTVKDIDGKSFPLSTLKGKAVLVVNLASQCGFTPQYNELQAIYDKFGKQGFTVLGFPCNQFGAQEPGSNQSI
KAFAKSQYGVTFPLMSKVDVNGPGAEPLFNWLKTQKGGVMGNDIKWNFSKFLVDKEGVVVGRYASTATPGSLEGDIRKALGA*

Retrieve as FASTA  
Remarks Complete sequence from genomic and 19 ESTs (5 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGCTGCAATCCCGTATCCATGCTCGCCCGGCGACACGTATCGCGGCGCGCCCGGCACGCCACCATGCTTTGAAGACCCAAGCACTGTTTGGCTTTGGTGGCGCTAAAACTGCAGAG
CCGTCGACAAGCGAATTTTACAGCTTCACCGTTAAGAGGTGTGAAGATCCAGCCAAATCTTGCATGTTGCCCAGCCCATACAGCGGTTTCTATTATTGCCGGCTACCAATCATAAGGAAT
TCCTATTGTTTCATGGTTCCATGTTTCATGAGTAAATGTTGGCCTCAAGTTACTGTTCTCAGAGCTTGTGCGATGGGCGTTGCGCAGGACATCGATGGCAAGAGCTTCCCGCTATCGACC
TTGAAAGGCAAGGCTGTTTTAGTCGTCAACCTCGCTTCGCAGTGCGGCTTCACGCCCCAATACAACGAGCTGCAGGCCATCTATGATAAGTTTGGCAAGCAGAGGTATGTTCTGCACCCC
GCTCCGGAACCGGTTCTTCCCTGTTCGGCCACGTCCAAGTGACCCGTGCTCCCCCTCATTCCAGTGCCAATCCCTTACCAGCTCCGAGGATGGATGTTATGGTCTTTCCCATCCTAATAC
CCCACGGGGGTTTCGCTCAACAGTTTGTGTAACGCATGCTCTCTTTGCATATTTCGGCGACTCCTTCCCTTCGCCCATTTGGCAGACGTTGTCGACTCTTTTTAGCGCCTAATCACTGAC
CTTCGGCTGCTGACCTCGTTTCATGACTCCATGTCGCCCCTGATGCTAGCAGGGCTTTACCGTTCTGGGCTTCCCCTGCAACCAGTTCGGCGCACAGGAGCCCGGCTCCAACCAGTCAAT
CAAGGCCTTCGCCAAATCCCAGTACGGAGTGACCTTCCCGCTGATGTCCAAGGTGGACGTGAATGGCCCTGGAGAGGTAGGTGGATTACATTTCATTGAATAGTAGAGGACTTTCCGGCT
AAACAGTTTCACCAAAGCAGCAGTCTGCAGTGCAACTGCTTTTTTATAATCGGCCGTCCCCCGCTGAGTGGCCTGAGTGGTTCCTTACTTCGCTTGTGCCGTTATGGTCCCCTCGTGTGC
GCATCATCACCTCTTCCAACACCACCTCTCGTCCGATGCACCGGTTTTCCTGCACCTCGGCAGCTGAGCCTCTGTTCAACTGGCTCAAGACGCAGAAGGGCGGTGTTATGGGTAATGACA
TCAAGTGGAACTTCAGAGGTGAGTGCATGACGACGGCGGGGAGGGGTGGGGGGTTTTAAGCAAGGCCGGATAAGGCGAAGCTGGCGGGGCGGCGTTTGCTAGAGGTTTGACATATTGAGG
AATGGTCGGACACTAATGAGCGAGGGCAGTGAAGGATCCGTGGGATCCAACGAAAGTGAAAGTGAAGCCTTTGGTCCTAGGCTCGAAAGGAATTTCAGAGCACCGCAAATGGGGATATGT
GAGTTTTGGGTCGCGAATAAAGCTGCTGCTGCGCGCTGTGCGCTGTACGCTGTACGAGACGGCGCGGGAGCTGTCGGTCTCGAACGAGGGGCCTGGGGGAATCAGGGGCGGTGCACCCCT
TCGTTGCCAATGCTTATCAAGGTGAACCCGTGCCCTGAGTTCCCTCGTCTAATCGTGTCGTGCCGTGTTGTGGCGACTTCCCCTCTGTACCCTTGACAGCAAATTCCTGGTGGACAAGGA
GGGTGTTGTGGTGGGCAGAGGTGAGAGGGTTTACGGTAGGAAAGGGCAAAATCACCATCCGGGAAGAGCTACAGCGTTTACTGCTAGAGCGAGAGGAATGCTAAAGTGTAAACCAGGGTT
TAAAGCTGGGGATGCCTTGCTTCGTCCGACGCCGAACGTGTGCTGCTGACTTCGATTGGGTTTCAATTACAGCCGCAGGGAAACTGACCCTCCCTCCCTCCACCTGGACGTTATTTCAGG
TATGCGTCCACGGCCACTCCGGGTTCCTTGGAGGGCGATATCCGCAAGGCCCTGGGGGCATGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGCTGCAATCCCGTATCCATGCTCGCCCGGCGACACGTATCGCGGCGCGCCCGGCACGCCACCATGCTTTGAAGACCCAAGCACTGTTTGGCTTTGGTGGCGCTAAAACTGCAGAG
CCGTCGACAAGCGAATTTTACAGCTTCACCGTTAAGGACATCGATGGCAAGAGCTTCCCGCTATCGACCTTGAAAGGCAAGGCTGTTTTAGTCGTCAACCTCGCTTCGCAGTGCGGCTTC
ACGCCCCAATACAACGAGCTGCAGGCCATCTATGATAAGTTTGGCAAGCAGGGCTTTACCGTTCTGGGCTTCCCCTGCAACCAGTTCGGCGCACAGGAGCCCGGCTCCAACCAGTCAATC
AAGGCCTTCGCCAAATCCCAGTACGGAGTGACCTTCCCGCTGATGTCCAAGGTGGACGTGAATGGCCCTGGAGCTGAGCCTCTGTTCAACTGGCTCAAGACGCAGAAGGGCGGTGTTATG
GGTAATGACATCAAGTGGAACTTCAGCAAATTCCTGGTGGACAAGGAGGGTGTTGTGGTGGGCAGGTATGCGTCCACGGCCACTCCGGGTTCCTTGGAGGGCGATATCCGCAAGGCCCTG
GGGGCATGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AACAGTTCGC TGTCTTCAAA CTGTGATTCA GGTTTAGGAA GGATGATGCT GCAATCCCGT ATCCATGCTC GCCCGGCGAC ACGTATCGCG GCGCGCCCGG CACGCCACCA TGCTTTGAAG  ACCCAAGCAC TGTTTGGCTT TGGTGGCGCT AAAACTGCAG AGCCGTCGAC AAGCGAATTT TACAGCTTCA CCGTTAAGGA CATCGATGGC AAGAGCTTCC CGCTATCGAC CTTGAAAGGC  AAGGCTGTTT TAGTCGTCAA CCTCGCTTCG CAGTGCGGCT TCACGCCCCA ATACAACGAG CTGCAGGCCA TCTATGATAA GTTTGGCAAG CAGGGCTTTA CCGTTCTGGG CTTCCCCTGC  AACCAGTTCG GCGCACAGGA GCCCGGCTCC AACCAGTCAA TCAAGGCCTT CGCCAAATCC CAGTACGGAG TGACCTTCCC GCTGATGTCC AAGGTGGACG TGAATGGCCC TGGAGCTGAG  CCTCTGTTCA ACTGGCTCAA GACGCAGAAG GGCGGTGTTA TGGGTAATGA CATCAAGTGG AACTTCAGCA AATTCCTGGT GGACAAGGAG GGTGTTGTGG TGGGCAGGTA TGCGTCCACG  GCCACTCCGG GTTCCTTGGA GGGCGATATC CGCAAGGCCC TGGGGGCATG AGGCTCCACC ACTTTGAGGA GCCGTCACGG GATGGAGTTG TCTGCCGGGA AGAGCGGCTG GCTCCTTCCC  CGCTGGGCCA TATCATATGG GGACTGGAGT GGATAGAAAT CCACTGAGTG GATATGGAAT GTGGTAGTTT TGGGATTTTG CATTTACTGA GAGATGTTGC CAATTGCACC GTTATGTTGT  CCAGGTCTAG GGGTTTGTGT CTCGTCGAGA TGAACGAAGG AGGGGTGGTG AAGCATGAAA AAAAGGGCTG AGAGACGAGT GAGGTGTGTG TGTGTGTGTG TGTGTGAGTA CAGATGGTCA  TAGCAGGTAA CATTGCAATG ATGACGCGGA GGGGAATGTG TTGCGCGTGT GATGAAATGT TGGACATGTC CAGCGCAGGA AGCATTTACA TGATATGTGC GTGCCGTACA TTTTCTGCAC  GTACAAGATC CGGCTCGCGT CGTGGCTTCG ACGACTGTCA TGATGGCTAA ACGTTTATAT ATTGCACAAT ACCAGCCAGT GAGTAACATG CCTTTAAAAC TAAAACCTCA CCTGTGTGAT  AGCTAAACTA TAATGACGGG AAAGATTGTG GCAAGTCAAC TGCTCCAAAC TTCCAAAGGA AGCCGAACGT CTCAAATGCA ACCAACAACC GTGGAAACGT CCACTCCGTG GACTAGTATG  CCATCAGTAC TAATTTAGCG TGTCAAGTCA TATGTTTGAC GCGTGTATGT TTGTATTTTT AACAAAGTAG TCTATTTCCA CATGCACTTC ACCAACTTGC TCGGCAAAAC AACTCCAAAA 
ACTGCCTTCC GTTTCCACTC AAGAGTGCAG GTCGAAGAAC AGAACTATCC GCGACGGCTG AT 

Retrieve as FASTA