View Redoxidase 9756

Entry information : TsPrx31 (Thhalv10004596m)

Entry ID	9756
Creation	2011-11-18 (Qiang Li)
Last sequence changes	2011-11-18 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-11-12 (Christophe Dunand)

Peroxidase information: TsPrx31 (Thhalv10004596m)

Name (synonym)

TsPrx31 (Thhalv10004596m)

Class

Class III peroxidase [Orthogroup: Prx002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

Leaves

Inducer

Cold stress

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsPrx31 start..stop	S start..stop
ThPrx31	661	0	1..323	1..323
BstrPrx60	578	0	23..324	16..317
AtPrx31	573	0	23..323	16..316
AlyPrx31	572	0	23..323	16..316

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9756' 'complement(join(5704731..5705702))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	5704731..5705702	970
complement(join(5704731..5705702))

Literature and cross-references TsPrx31 (Thhalv10004596m)

Literature	Wong,C.E., Li,Y., Whitty,B.R., Diaz-Camino,C., Akhter,S.R., Brandle ,J.E., Golding,G.B., Weretilnyk,E.A., Moffatt,B.A. and Griffith,M. Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap. Plant Mol. Biol. 58 (4), 561-574 (2005)
DNA ref.	Phytozome 12: scaffold_6 (5705702..5704731)
EST ref.	GenBank: DN773596.1

Protein sequence: TsPrx31 (Thhalv10004596m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	323 (297)
PWM (Da):	35770.08 (32864.5)
PI (pH):	8.55 (8.72)	Peptide Signal:	cut: 27 range:27-323

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MAEQSPLKSL SLLLFFLTLL ASTAESRLST DFYSKSCPRF LDIVRDTITN KQITNPTTAA AVIRLFFHDC FPNGCDASVL VSSTAFNSAE RDSSINLSLP GDGFDVITRA KTALELACPN TVSCSDIISV ATRDLLVTVG GPYYSVFLGR RDSRTSKSSL VDDLLPVPSS PISKLIHQFE SRGFSVQEMV ALSGAHSIGF SHCKEFAGRV ARNNTGYNPR FADALRKACA NYPKDPTISV
FNDIMTPNKF DNMYFQNIPK GLGVLESDHG LYSDPRTRPF VDLYARDQDR FFKDFARAMQ KLSLYGVQTG RRGEIRRRCD AIN*

Retrieve as FASTA

Remarks

Complete sequence fromm genomic and 1 EST.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGCGGAAC AATCGCCACT CAAATCTCTC TCCCTCCTCC TCTTCTTCCT CACTCTACTC GCCTCCACCG CAGAATCTCG CCTATCCACC GATTTCTACT CAAAATCATG CCCTAGATTC CTCGACATAG TCCGCGACAC AATCACAAAC AAACAAATCA CGAACCCAAC CACCGCAGCC GCCGTAATCC GCCTCTTCTT CCACGACTGT TTCCCCAACG GCTGCGACGC CTCCGTCCTC GTCTCCTCCA CCGCCTTCAA CTCCGCCGAA CGCGACTCCT CAATCAACCT CTCCCTCCCC GGCGACGGAT TCGACGTCAT CACCAGAGCC AAAACCGCTC TCGAGCTCGC TTGCCCAAAC ACCGTCTCTT GCTCCGACAT CATCTCCGTC GCGACTCGCG ACCTCCTCGT CACCGTCGGT GGTCCTTACT ACTCCGTCTT CCTCGGCCGC CGCGACTCGC GAACCTCGAA ATCGTCTCTC GTCGACGATC TCCTCCCTGT TCCGTCTTCT CCGATCTCGA AGCTCATTCA CCAGTTCGAA TCCAGAGGAT TCTCCGTTCA GGAAATGGTC GCTCTCAGTG GGGCCCATTC CATTGGATTC TCGCATTGCA AAGAGTTTGC GGGTCGGGTC GCCCGTAATA ACACCGGGTA TAACCCGAGA TTCGCGGACG CGTTGAGGAA AGCTTGTGCG AATTACCCGA AAGACCCGAC GATATCTGTC TTCAACGATA TCATGACTCC GAACAAATTC GACAATATGT ATTTCCAGAA TATCCCCAAA GGTCTCGGGG TACTCGAGTC GGATCACGGG TTATACTCCG ACCCGAGAAC CCGGCCTTTT GTTGATCTTT ACGCTAGAGA TCAAGATCGA TTCTTTAAAG ATTTCGCTAG AGCTATGCAG AAGCTGAGCC TTTACGGTGT ACAGACTGGC CGACGGGGAG AGATACGGCG AAGGTGCGAT
GCGATTAACT GA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA