View Redoxidase 9789

Entry information : TsAPx06 (Thhalv10018581m)

Entry ID	9789
Creation	2011-11-18 (Qiang Li)
Last sequence changes	2011-11-18 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-12-30 (Christophe Dunand)

Peroxidase information: TsAPx06 (Thhalv10018581m)

Name (synonym)

TsAPx06 (Thhalv10018581m)

Class

Ascorbate peroxidase [Orthogroup: APx2002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsAPx06 start..stop	S start..stop
AlyAPx06	726	0	1..434	1..429
AtAPx06	716	0	1..434	1..426
AhalAPx08	714	0	1..435	1..425
CagraAPx06	708	0	1..435	1..431

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1393683..1393877	193	N° 2	1393475..1393609	133	N° 3	1393238..1393358	119	N° 4	1393061..1393161	99
N° 5	1392876..1392963	86	N° 6	1392695..1392762	66	N° 7	1392505..1392591	85	N° 8	1392328..1392402	73
N° 9	1392132..1392209	76	N° 10	1391949..1392053	103	N° 11	1391751..1391825	73	N° 12	1391484..1391660	175
complement(join(1391484..1391660,1391751..1391825,1391949..1392053,1392132..1392 209,1392328..1392402,1392505..1392591,1392695..1392762,1392876..1392963,1393061. .1393161,1393238..1393358,1393475..1393609,1393683..1393877))

Literature and cross-references TsAPx06 (Thhalv10018581m)

Literature	Taji,T., Sakurai,T., Mochida,K., Ishiwata,A., Kurotani,A., Totoki,Y., Toyoda,A., Sakaki,Y., Seki,M., Ono,H., Sakata,Y., Tanaka,S. and Shinozaki,K. BMC Plant Biol. 8, 115 (2008).
DNA ref.	Phytozome 12: scaffold_9 (1393877..1391484)
EST ref.	GenBank: BAJ34299 [3' end]

Protein sequence: TsAPx06 (Thhalv10018581m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	434
PWM (Da):	47298.88	Transmb domain:	o406-425i
PI (pH):	8.19

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAFSLSAASHSSLCSSASTKVSLSPAVSSSAPLVALSSSSSQPHSFSSLRSVKSSSLFPHFSFTQRKYPINGTKNRGCSTKCAASDAAQLRSAKEDIKVLLRTKFCHPIFVRLGWHDAGT
YNKNIEEWPQRGGANGSLRFEAELKHAANAGLISALNLIQPIKDKYSNISYADLFQLASATAVEEAGGPEIPMKYGRVDVSVPDQCPEEGRLPDAGPPSPADHLRDVFYRMGLNDQEIVA
LSGAHTLGRARPERSGWGKPETKYTKTGPGEAGGQSWTVKWLKFDNSYFKDIKEKRDEDLLVLPTDAALFEDPSFKNYAEKYAEDPAAFFKDYAEAHAKLSNLGAKFDPPEGIIIDNDPA
QGTPEKFVAAKYSTGKKELSESMKKKIRAEYEAIGGSPNKPLPTNYFLNIIIAISVLVLLFTFFGNNNSDYSGF*

Retrieve as FASTA

Remarks

Complete sequence from genomic and 1 EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTTTTTCTCTCTCCGCCGCTTCTCACTCATCACTCTGCTCCTCCGCCTCCACCAAAGTCTCTCTTTCCCCCGCCGTCTCTTCCTCAGCCCCTCTCGTTGCTCTTTCTTCCTCTTCA
TCACAACCACATTCTTTCTCTTCTCTCCGAAGCGTCAAATCTTCCTCTCTATTTCCACATTTCTCCTTTACTCAGGTAATCAATCGCCGAATTTCGGTTTCGGAATCAGAAGAAATTTGT
AAAGTTTAACAATTTGTGTTGGTTACAGAGAGAAAATATCCGATTAATGGGACGAAGAACAGAGGTTGTAGCACGAAATGTGCCGCCTCTGATGCAGCTCAATTGAGAAGCGCTAAAGAA
GATATCAAAGTTCTTCTCCGGACAAAGTTTTGCCATCCGATATTCGTTGAGTATCCTTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATCCCTTGATTTTGAAGAATTGAAAT
TCTTGTGCTTTTGTCTTTTGACAAATATTTACATTTTGCAGGTGTCAGGTTGGGATGGCACGATGCTGGCACATATAACAAGAACATCGAGGAGTGGCCACAGAGAGGTGGAGCTAATGG
AAGTCTTAGATTTGAGGCTGAGCTTAAGCATGCTGCAAATGCTGGTATACACTTGTTTTGTCTTTAGCCTCCTCAAGACTTGCTTTTGTTTTACCGCTTTTTCATCTTTACATTCTACAG
GTGTCTCATTAGTGCGTTAAATCTAATTCAGCCTATCAAAGACAAGTATTCTAACATCTCTTACGCCGACTTATTCCAGTTAGCTAGTGCCACTGCAGTGGAGGTCGTCCTAAAAGTTTA
CATTATTCTGAATTAGCTAGTGTGATACTAAGTTGGTCTTGAAAATTTACTGATAACTTTAGATAAAAAAAAAACTTCAGGAGAGGCTGGTGGTCCTGAGATCCCGATGAAATATGGGAG
AGTTGATGTCTCGGTACCAGACCAATGTCCAGAAGAAGGAAGACTCCCTGGTTAAACTAATCTTTTAGCATTGTCTGTTTTCTTGGCTTCGATTGAGTTTGTTTTCAGATTTTGTTTATG
GAATAATTGAAATAACGAGGGTGAAAATTTATGTTATGTTTAGATATGCTGGACCGCCTTCACCAGCTGATCATTTGAGAGATGTATTCTACAGAATGGGACTCAATGATCAGGTCGTTT
TTTTTTTTTTTTTGTCTCATTTTCTGTTGCTCATGTCAAACAGGAATTACTCTCATTTTTTTATGCTGACAGTCGAATGTTGTTTTTTTCAAGCAGGAGAGATTGTTGCCTTATCTGGTG
CACATACCCTAGGAAGAGCCAGACCAGAACGTAGCGGTTGGGGAAAACCTGAGACAAAGTACACGGTATATACATATTGAATAAACGACAAAACGTAAAGCTCTCTTATAATAGTGGTCG
TAGCGATGACAGTGTAGAGATCTTATGTAAACGTTCAAAACTGGCAGAAAAAACTGGACCTGGAGAAGCAGGGGGACAGTCTTGGACGGTGAAATGGCTTAAGTTTGACAATTCCTATTT
CAAGGTCTACCTCTCTATCTCTGTCTGTCTTAAGTAGCTTGGACTGGGGAATGAAGAAGAGTTTTTCAACAAGTTAATATATATGAATAAGATCCTCAGTTTCTTAGTTGTATGACTTGC
AGGAGATATCAAAGAAAAGAGGGACGAAGATCTTCTCGTGTTACCAACTGATGCTGCGCTATTTGAAGATCCTTCATTCAAGGTTAACAAAACCAGTGATAAGATGCCACAGAACTAGTA
GTTCCTACTCTCTTTTTTTGACACTTTGTTTTTTGTACAGAAAACTATGCAGAGAAGTATGCTGAAGATCCGGCTGCATTTTTCAAGGATTACGCTGAAGCTCATGCCAAGCTCAGCAAT
CTCGGGGCTAAATTTGATCCTCCTGAGGTACATCTTAAAGACAATAATCTTATCTCGAGCCACTAGTGTTAACTATGCGTTTTAAATCCAGTTCAGTGACTTAACCAACATTAAACATAG
TCTAAAACTGCTAATGTTGCTGTTAATCAGGGGGTATCATCATTGACAACGACCCTGCACAAGGAACTCCAGAGAAGTTCGTAGCCGCTAAGTATTCCACTGGAAAGGTTTGTCTTTAGT
ACACAAGAGAAAAAAGTGTTTGTAGCTTACTGTAATATACATTTTTTGAGGAGATTGATTCTTTTTTTTCTAAATAGAAAAGGAGCTTTCGGAGTCAATGAAGAAGAAGATAAGAGCAGA
GTATGAAGCAATTGGAGGAAGCCCAAATAAGCCCTTACCCACTAATTACTTCCTCAACATCATTATCGCCATCAGCGTTTTGGTCCTCTTGTTCACTTTCTTTGGTAATAACAACTCCGA
TTACTCTGGTTTCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA