View Redoxidase 9804

Entry information : TsAPx-R (Thhalv10025686m)

Entry ID	9804
Creation	2011-11-18 (Qiang Li)
Last sequence changes	2011-11-21 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-12-30 (Christophe Dunand)

Peroxidase information: TsAPx-R (Thhalv10025686m)

Name (synonym)

TsAPx-R (Thhalv10025686m)

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsAPx-R start..stop	S start..stop
AlyAPx-R	570	0	3..330	2..329
AtAPx-R	569	0	3..330	2..329
BstrAPx-R01	555	0	3..331	2..332
AhalAPx-R01	553	0	3..331	2..330

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	3288921..3289113	191	N° 2	3288749..3288845	95	N° 3	3288536..3288651	114	N° 4	3288327..3288397	69
N° 5	3288160..3288202	41	N° 6	3287985..3288081	95	N° 7	3287810..3287893	82	N° 8	3287602..3287723	120
N° 9	3287410..3287476	65	N° 10	3287221..3287323	101
complement(join(3287221..3287323,3287410..3287476,3287602..3287723,3287810..3287 893,3287985..3288081,3288160..3288202,3288327..3288397,3288536..3288651,3288749. .3288845,3288921..3289113))

Literature and cross-references TsAPx-R (Thhalv10025686m)

Literature	Taji,T., Sakurai,T., Mochida,K., Ishiwata,A., Kurotani,A., Totoki,Y., Toyoda,A., Sakaki,Y., Seki,M., Ono,H., Sakata,Y., Tanaka,S. and Shinozaki,K. BMC Plant Biol. 8, 115 (2008).
DNA ref.	Phytozome 12: scaffold_1 (3289113..3287221)
EST ref.	GenBank: BAJ34274

Protein sequence: TsAPx-R (Thhalv10025686m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	330
PWM (Da):	35789.33
PI (pH):	8.96

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MTTTTTASLFETSLSRCYSSSSSSSSFKFESPAKTKTRLFSPATGNHVIRSVTACRIRCASDDPGSVFLSSRRKVVVLLSTMQLLSQSLPPNGNAAEIYQLMQNEIKKVVTKGKAAGVLR
LVFHDAGTFELDDNTGGINGSIAYELERPENTGLKKSLKVLAKAKIKVDEIQPVSWADMISVAGSVAVSICGGPTIPVVLGRLDSTQPDPEDKLPPESLSASGLKECFKRKGFSTQELVA
LSGAHTLGSKGFGDPTVFDNAYYKILLAKPWTSASKMTSMVGLPSDHALVEDDECLRWVKRYAEDQDKFFQDFTNAYTKLVNSGAKWKML*

Retrieve as FASTA

Remarks

Complete sequence from genomic and 1 EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGACGACGACGACGACTGCGTCTCTGTTTGAAACTTCTCTTTCTCGGTGCTACTCGTCTTCTTCTTCTTCTTCTTCTTTCAAATTCGAATCTCCCGCGAAAACGAAAACGCGACTGTTC
TCGCCAGCGACTGGGAATCATGTTATCCGATCGGTGACAGCATGTCGTATCCGTTGCGCCTCCGATGATCCTGGTAAGACCGGATTCTAGTATAGTTTGCACACTCTGTTCTACATGGCT
TAATGTTGTGTTTCTGGGAAATTCCTAGGAGATCTGTTTTTCTTTCCAGTAGAAGAAAAGTAGTTGTTCTGTTGTCCACGATGCAGCTTCTGTCTCAGTCACTTCCCCCAAATGGAAATG
CAGCTGAGTGAGTTTGAGCAAATCCTTGTTTTTATAATTGACCACCAAAAAGATTGTTCCTTTTTTTTTAATGTAATTTCTGAAATCGAGTGTTGGGATTTCAGAAAATTTATCAACTGA
TGCAAAACGAAATAAAGAAAGTGGTGACAAAGGGAAAGGCTGCTGGTGTGCTTCGTTTAGTGTTTCATGATGCTGGAACCTTTGAGCTCGACGATAATACAGGTAATTTCAAAGCTTGGT
CGGTTTAGGTTCAGTTTGCTCCTTTTGCTGCTTCTTTCTCAGTAACAAGATACTGCAATCCACTTTAGTTGAGATCAGTTATGTCTTATTTGTTCTTTCTTGGTAATGAAATGATTGCAG
GTGTGGCATCAACGGGTCTATTGCTTACGAACTCGAGAGACCTGAAAACACAGGTTTGAAGAAATCCCTAAAGGCACTAAATCCCTCTCCTTTTTGTTTGTTGTTGTTGTTGTTGTTATT
TGCACTTGTATCTCAGAATTTTTCAAATATTTTACTTTCAAATAGCTAATTTTCATGGTAGATGGAATCTATGTTAGGTGTTCTAGCGAAAGCAAAGATAAAGGTTGATGAGATACAACC
AGGTAATTACTGTTTCAACTTTACACACCAGAGAAATGTGTCCTGTTAGTGCAAAATGTTCTCAATCTGTGTGTTCTTAGTGTGTCTTGGGCGGATATGATATCTGTCGCTGGGTCTGTA
GCGGTTTCAATATGTGGCGGCCCAACAATTCCAGTAGTTTTGGGAAGACTTGATTCAACGTAAGCAATGGTACTCCTTCCCCTCTCTCTCTCTCTCTCAAAGACACTGTTTCTATATTTT
TAACAGGATGATTGTTTCAATGTTTCACAGGCGCAACCTGATCCAGAAGACAAGCTACCTCCAGAATCCCTGAGTGCCTCGGGTTTGAAAGAATGCTTCAAAAGAAAAGGATTTTCGTGA
GTTTTTCTTACACAAAACATAGCTGAGACTAGAAGACTCATGTTAACATTTTGTAACTTGGGGGTTTGTGTTGCCATTGCAGGAGACCCAAGAACTTGTTGCCTTATCTGGGGCACATAC
GCTTGGGAGTAAAGGCTTTGGAGATCCAACTGTTTTTGACAATGCATATTACAAAATCCTTCTCGCAAAGCCTTGGACATCGGCATGTAAGTCTCGTGACAAAGTTCTTGCTACTGTCTC
TACAGTTTCATCATCTGCCATGTTCCGAGCTGTTATACTGAGATTATATCCTTACATAGTTTATCTTATTATGACTCCATTTCGGATGCAGCCCCAAAATGACGAGCATGGTCGGGCTTC
CTTCGGATCACGCCTTAGTGGAGGATGATGAGTGCTTAAGGTTTCTCATCTTACATTTACGATTTTCATTTTTGCTATCGATAGTAACATTCAAAAATGATATAAGATTCGTGGTTTGGT
GCATAGGTGTGGGTGAAACGATATGCGGAAGATCAAGACAAGTTCTTCCAAGACTTCACCAATGCTTATACCAAACTAGTCAATTCTGGGGCCAAATGGAAAATGTTATGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA