analysis

Cis Elements Analysis

PLACE
Search for Plant Cis-acting Regulatory DNA Elements

MEME
MEME will analyze your sequences for similarities among them and produce a description (motif) for each pattern it discovers.

Please enter the nucleotide sequence as FASTA formats (Max 20 sequences) and press submit button.
>AtRboh03 TTACTTGTTATAGACGTAGTCATGTTTTTTTCTTTTTATTCTCGTTTTCGAATGAACACGTTCCAAAGATTGCAATTAAGTACAAATTCAAGTTGACACAAAACTTGGAGGTTTGTCGGCAATTGCACTCTACAACATTAGCTTTTAGGAGAACTAATCATGTATAGTCATCTTTGAGTTGATCAAGATCAAAGATTAACTTTTGTTGTAGCACATTTATATGGTTGTAGAGGATCGGTATGGAATTGGACTTTATAGTTCAAATGTGGTAACAAACGTTGAAAACGCAAAAGTAGGCAAATAAATTAAAAACCAAACGCAACACATGCGTGTTACAGAAGAAGAGCTCAAGTTGCACACACACAAACAAATAAAACGGTCCCAATCCAAAAATACAGAATAGAGAAAATGAAATTGGTTGCCAAATTAAAACTTAAGAGCCTAATGGTGACAATTTAGTGTTCCTAATTGTCTCCCCTTCAACTTTTCGTTGGAAAATTCTTTCCATGTGAAGAAAAATAGAAAGACATACAAAAATATAGTCAACTTATTGGTTACCCAAATCGTCCTCATGCATGTGAATTCACGAGCTTTTTAACGTACAATGGGAAGAATACGTGTGTACTTTTCTATTAATCTTGTCTTAATTTACTAATTTTATTTACGCCAAAAAAAAAAAAGTACACACGTATTCTTCACATTGTGTTACTTCTTAAAAAAAAAATTGATTTTTATTTATTTAAGACAAGATAATAGAAAAGTAACACAATGTTTTGCTACTTTAAATATTTTATTTTGTTGGTATCTCATACAATTTTCATAGATATAGATAGGCCCAAACATTTTCATAGATATAGGCCCAAACATTTTCTATATATGTATTCATATTCGTCAAAATTATCTCGTAACCATAATTTAAAACTGTTTTCATTATGAAAATCTGAAAACCTACACCAATTTACATTTGTTAATAATATACAAACAATATTCCAAGATAAATTTAAATTCTAACTGCCGTAATGTTTGTGGAGTTTTAAGAACATAGTTGTCTATGTACATCTTTGATAAAATTTGTTATATATATGTAGTACATCAAATATCTTTAATAGTTACACTTTTGTCATGTTTTTATATATTTAACCTAAGAATTACTTTCTTTTTTTTGGACAAACATAAGAATTACTATAACATTTATTATGTCGTACGAAATTCATTTTATAACATTGTTGTATTCATGAAATATATGTTTGAAGTTTTCGCTGCTAAAGATTCACAGCTATCCCCGCTCTTTGATTATTGTCATACTATGTGCATGATCAAACTTTATATGGAAGGATCATCCATGTTCTATAGACTATTTCTTTTTAAATGCAATTTGTACTTTGTTTTAATCAAATACAATTTGTTTTCGTAATTCTTTAGACTTCCAATTAATAATTTTTTAAAATAAGTTTCCAACATTCGCTATGGACTTGTTAAAAAACAGTGGACTATTGTTCTAATTCTTAAATAAACAACTAGTGAAAAAAACTCAACTTTGTTATGTATAATATTTGTTTTTTTCTCAATGTATTGCATTACAAATGCACGTTACAACCTCAATTAGTTGTTATTTGTTAAATATTTTGCATCATAGATGACAAAGTTGGTGGGCCAAGTCCGACCACGTCTCTCTTCTTTATTCAAATTCTTTTACTCGTCTCTTCTCTTCACTATTTATACGAATCCATTTTCTCATTCTCCTATCAAAAATTACTTGAGAGATCGTTTACTTTCAGAGAGAAGAATAACATCAAATATTTTCCCGGAAAAATTCTCTCATTTTCTCGGGAAAAATGTTGTCTCTGCGTTTACAAAATTTTCCTCTAAAAAAGTAGTGAGAGATTCCATAAGACCATAACCAGTAGACAACAAATTCTTCATCATTTTGTGTCTCTTGTTTGAGATCCCGGTGAAATTTAGCGGCGACGAGAAAATTTTCAGGTAGAGTGTGTTAAAAA

NOTE: Length of submitting sequence must be less than 4,356. Otherwise, you will get empty result.

If you use this data file in published research, please cite:
Higo, K., Y. Ugawa, M. Iwamoto and T. Korenaga (1999) Plant cis-acting
regulatory DNA elements (PLACE) database. Nucleic Acids Res. 27 (1): 297-300.

Use this form to submit DNA or protein sequences to MEME. MEME will analyze your sequences for similarities among them and produce a description (motif) for each pattern it discovers.

Data Submission Form 1732040854

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Please enter the sequences which you believe share one or more motifs.
The sequences may contain no more than 60000 characters total total in any of a large number of formats.

Enter the name of a file containing the sequences here:

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or the actual sequences here (Sample Protein Input Sequences):
You need at least two differents nucleotide sequences (name and sequence)!

>AtRboh03
TTACTTGTTATAGACGTAGTCATGTTTTTTTCTTTTTATTCTCGTTTTCGAATGAACACGTTCCAAAGATTGCAATTAAGTACAAATTCAAGTTGACACAAAACTTGGAGGTTTGTCGGCAATTGCACTCTACAACATTAGCTTTTAGGAGAACTAATCATGTATAGTCATCTTTGAGTTGATCAAGATCAAAGATTAACTTTTGTTGTAGCACATTTATATGGTTGTAGAGGATCGGTATGGAATTGGACTTTATAGTTCAAATGTGGTAACAAACGTTGAAAACGCAAAAGTAGGCAAATAAATTAAAAACCAAACGCAACACATGCGTGTTACAGAAGAAGAGCTCAAGTTGCACACACACAAACAAATAAAACGGTCCCAATCCAAAAATACAGAATAGAGAAAATGAAATTGGTTGCCAAATTAAAACTTAAGAGCCTAATGGTGACAATTTAGTGTTCCTAATTGTCTCCCCTTCAACTTTTCGTTGGAAAATTCTTTCCATGTGAAGAAAAATAGAAAGACATACAAAAATATAGTCAACTTATTGGTTACCCAAATCGTCCTCATGCATGTGAATTCACGAGCTTTTTAACGTACAATGGGAAGAATACGTGTGTACTTTTCTATTAATCTTGTCTTAATTTACTAATTTTATTTACGCCAAAAAAAAAAAAGTACACACGTATTCTTCACATTGTGTTACTTCTTAAAAAAAAAATTGATTTTTATTTATTTAAGACAAGATAATAGAAAAGTAACACAATGTTTTGCTACTTTAAATATTTTATTTTGTTGGTATCTCATACAATTTTCATAGATATAGATAGGCCCAAACATTTTCATAGATATAGGCCCAAACATTTTCTATATATGTATTCATATTCGTCAAAATTATCTCGTAACCATAATTTAAAACTGTTTTCATTATGAAAATCTGAAAACCTACACCAATTTACATTTGTTAATAATATACAAACAATATTCCAAGATAAATTTAAATTCTAACTGCCGTAATGTTTGTGGAGTTTTAAGAACATAGTTGTCTATGTACATCTTTGATAAAATTTGTTATATATATGTAGTACATCAAATATCTTTAATAGTTACACTTTTGTCATGTTTTTATATATTTAACCTAAGAATTACTTTCTTTTTTTTGGACAAACATAAGAATTACTATAACATTTATTATGTCGTACGAAATTCATTTTATAACATTGTTGTATTCATGAAATATATGTTTGAAGTTTTCGCTGCTAAAGATTCACAGCTATCCCCGCTCTTTGATTATTGTCATACTATGTGCATGATCAAACTTTATATGGAAGGATCATCCATGTTCTATAGACTATTTCTTTTTAAATGCAATTTGTACTTTGTTTTAATCAAATACAATTTGTTTTCGTAATTCTTTAGACTTCCAATTAATAATTTTTTAAAATAAGTTTCCAACATTCGCTATGGACTTGTTAAAAAACAGTGGACTATTGTTCTAATTCTTAAATAAACAACTAGTGAAAAAAACTCAACTTTGTTATGTATAATATTTGTTTTTTTCTCAATGTATTGCATTACAAATGCACGTTACAACCTCAATTAGTTGTTATTTGTTAAATATTTTGCATCATAGATGACAAAGTTGGTGGGCCAAGTCCGACCACGTCTCTCTTCTTTATTCAAATTCTTTTACTCGTCTCTTCTCTTCACTATTTATACGAATCCATTTTCTCATTCTCCTATCAAAAATTACTTGAGAGATCGTTTACTTTCAGAGAGAAGAATAACATCAAATATTTTCCCGGAAAAATTCTCTCATTTTCTCGGGAAAAATGTTGTCTCTGCGTTTACAAAATTTTCCTCTAAAAAAGTAGTGAGAGATTCCATAAGACCATAACCAGTAGACAACAAATTCTTCATCATTTTGTGTCTCTTGTTTGAGATCCCGGTGAAATTTAGCGGCGACGAGAAAATTTTCAGGTAGAGTGTGTTAAAAA

Use sequence name not sequence Id.

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MEME will find the optimum number of sites for each motif within the limits you specify here:

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Perform discriminative motif discovery – Enter the name of a file containing negative sequences :

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Look for palindromes only