Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
323 (301) |
| PWM (Da): |
33936.28 (31683.1) |
Transmb domain: |
i7-29o |
| PI (pH): |
8.77 (8.89) |
Peptide Signal: |
cut: 23 range:23-323 |
|
Sequence
Send to BLAST
Send to Peroxiscan
|
| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MASSSAYLSF VLVICLISPA ISGPLKVGFY QKKCPSAEAM VRESVQKALA ADPGAVAPLI RLHFHDCFVR GCDGSILLxx xxxxxAEKDS MGNLGIGGFE VIDDAKAKIE AQCPNTVSCA
DIVAFAARDG VRAAGGLHYA VPSGRRDGRV SLASEVIQNL PGAFFDPAQL KANFAKKGLS LRNMVTLSGA HSIGDSHCSQ FTKRLYSFNS TYSQDPSLNP NYAHLLKTKC PRNSPTDPIV
PFDPVTPNVL DNAYYHNLKS DKGLLYSDQV LWDAPLTRGL VKDNANHPSA WARRFTAAMV RMGSIEVLTG TQGEIRKNCR VIN
|
Retrieve as FASTA
|
|
| Remarks |
Complete sequence from NGS (intron 1 and extra 5'). Some XXX in Protein due to NNN in DNA. |
DNA ►
Send to BLAST
|
| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCAAGCT CGAGCGCTTA CTTGAGCTTT GTTTTGGTGA TCTGTTTAAT TTCACCTGCA ATTTCAGGTC CGATTTCATT TTCTCTTATG CTAGCAGTTT CAACACGTGC GTTTGAGTTG
ATATATTGTC CATTGAAGGT TGGGTTTTAT CAGAAGAAAT GCCCATCTGC TGAGGCCATG GTGAGAGAGT CAGTACAGAA GGCTCTAGCT GCTGACCCTG GAGCTGTTGC TCCGCTCATT
AGGCTCCATT TCCATGACTG TTTTGTCAGG GTAATTTTCT AACTCAAGCA TTTTATGTGC AACATCATTA CAAGTGTGTT TGGTTTAGCA ATTGCAAAAC TTGGGCAAAT GCAAATACTG
TTTGGCAAAA TTTTTTGGGC ACTTTGAGGA GATGCAATTT GCACCTTCAA AGCTCTTTAA AGGCATTTAA TGCAAATTAA GTTAGGAGAT ACTTTAAAAT GTTATGTTTC CAAAATTCAA
ATAGACATTT TTCCTTCCAA CTTTACCATC GCTCAACTTT CATAATTCCC AAAATGTTCT TGAAAGCCCT AATTTTTGCC TCAGCCACCA ACGAGCAACC GGCGTGCCAT CGGTGAGTAG
TTGGTGAGCC ACTACCACTC TCAATGGTGG TGACTGAGTT CCACTGACAA ATAATTTGAG ATTTTTTATA AAAAAAATTG GCAAAAACCA TTTACAAAGT ATAATTTGTA CCATATAGTA
Tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnAAAAAA CATTTCTGAA
AAGTCGAACT AAACACACCT TTTAAGTATT CTCTTGCAAT GTCTATTATA TTTGCATATT GATCCACTTT TTTCGCAAAA CCCATACATG GGCCAGCTTT CATTTGAATA ACTAATCCTA
GGAACTTAGA AGTCGGGTTT GCATGATTGA TGTCACAAAC TCTAAATGGA Tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ATATCTAATT ATAAATAATC CTATAAAAAA TGGATATTTC
TATGGTGTGA CGTACGGTCT TCTAGTACTC AGGGTTGCGA CGGGTCCATT CTTCTCAnnn nnnnnnnnnn nnnnnnnGCG GAGAAAGATA GCATGGGAAA CCTCGGCATC GGGGGCTTTG
AGGTGATCGA CGATGCCAAG GCCAAGATTG AAGCCCAATG CCCTAACACC GTCTCATGTG CCGACATTGT GGCCTTCGCC GCTCGCGATG GTGTTCGAGC TGCCGGAGGC TTACACTATG
CCGTCCCTAG CGGGAGGCGG GATGGGAGAG TCTCGCTCGC GTCGGAGGTG ATCCAAAACC TCCCCGGCGC ATTTTTTGAC CCTGCGCAAC TCAAAGCGAA CTTTGCGAAG AAAGGGCTTT
CGCTCCGAAA CATGGTGACT CTCTCCGGAG CTCACTCCAT CGGGGACTCT CATTGCTCCC AATTCACGAA GCGACTCTAC TCCTTCAACT CGACGTATTC ACAAGATCCT TCCCTTAATC
CTAATTATGC CCATCTTTTG AAGACCAAGT GCCCGCGAAA CAGCCCCACC GACCCGATTG TACCATTCGA CCCCGTGACG CCGAACGTAC TCGATAATGC TTACTACCAC AACTTAAAGA
GTGACAAGGG ATTGTTGTAT TCGGACCAAG TGCTGTGGGA TGCGCCATTG ACAAGGGGGT TAGTGAAGGA CAATGCGAAC CACCCGAGCG CTTGGGCTCG GAGGTTCACG GCAGCGATGG
TGCGCATGGG TTCGATCGAG GTGCTCACTG GCACGCAAGG CGAAATTAGG AAGAATTGCA GGGTGATAAA TTAA
|
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCAAGCT CGAGCGCTTA CTTGAGCTTT GTTTTGGTGA TCTGTTTAAT TTCACCTGCA ATTTCAGGTC CATTGAAGGT TGGGTTTTAT CAGAAGAAAT GCCCATCTGC TGAGGCCATG
GTGAGAGAGT CAGTACAGAA GGCTCTAGCT GCTGACCCTG GAGCTGTTGC TCCGCTCATT AGGCTCCATT TCCATGACTG TTTTGTCAGG GGTTGCGACG GGTCCATTCT TCTCAnnnnn
nnnnnnnnnn nnnnnGCGGA GAAAGATAGC ATGGGAAACC TCGGCATCGG GGGCTTTGAG GTGATCGACG ATGCCAAGGC CAAGATTGAA GCCCAATGCC CTAACACCGT CTCATGTGCC
GACATTGTGG CCTTCGCCGC TCGCGATGGT GTTCGAGCTG CCGGAGGCTT ACACTATGCC GTCCCTAGCG GGAGGCGGGA TGGGAGAGTC TCGCTCGCGT CGGAGGTGAT CCAAAACCTC
CCCGGCGCAT TTTTTGACCC TGCGCAACTC AAAGCGAACT TTGCGAAGAA AGGGCTTTCG CTCCGAAACA TGGTGACTCT CTCCGGAGCT CACTCCATCG GGGACTCTCA TTGCTCCCAA
TTCACGAAGC GACTCTACTC CTTCAACTCG ACGTATTCAC AAGATCCTTC CCTTAATCCT AATTATGCCC ATCTTTTGAA GACCAAGTGC CCGCGAAACA GCCCCACCGA CCCGATTGTA
CCATTCGACC CCGTGACGCC GAACGTACTC GATAATGCTT ACTACCACAA CTTAAAGAGT GACAAGGGAT TGTTGTATTC GGACCAAGTG CTGTGGGATG CGCCATTGAC AAGGGGGTTA
GTGAAGGACA ATGCGAACCA CCCGAGCGCT TGGGCTCGGA GGTTCACGGC AGCGATGGTG CGCATGGGTT CGATCGAGGT GCTCACTGGC ACGCAAGGCG AAATTAGGAA GAATTGCAGG
GTGATAAATT AA
|
Retrieve as FASTA
|
|
