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Entry information : AtrPrx20(AmTr_v1.0_scaffold00123.2)
Entry ID 11482
Creation 2012-12-05 (Qiang Li)
Last sequence changes 2016-03-23 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-09 (Christophe Dunand)
Peroxidase information: AtrPrx20(AmTr_v1.0_scaffold00123.2)
Name AtrPrx20(AmTr_v1.0_scaffold00123.2)
Class Class III peroxidase    [Orthogroup: Prx037]
Taxonomy Eukaryota Viridiplantae Streptophyta Amborellaceae Amborella
Organism Amborella trichopoda    [TaxId: 13333 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtrPrx20
start..stop		 S start..stop
PpePrx21 354 6.25e-123 18..315 21..321
AtrPrx19 349 3.72e-121 19..318 6..303
VvPrx82 347 5.57e-120 1..318 7..325
GmPrx324 337 4.01e-116 21..318 29..327
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 471089..471286 196 N° 2 469718..470075 356 N° 3 468794..469194 399  
complement(join(468794..469194,469718..470075,471089..471286))


exon

Literature and cross-references AtrPrx20(AmTr_v1.0_scaffold00123.2)
DNA ref. GenBank:   KI396296.1 (471286..468794)
Protein sequence: AtrPrx20(AmTr_v1.0_scaffold00123.2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (300)
PWM (Da):   %s   34449.64 (32518.5) Transmb domain:   %s   o357-379i439-461o499-521i534-556o571-589i727-744o
PI (pH):   %s   5.79 (5.53) Peptide Signal:   %s   cut: 19 range:19-318
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAKLLLFLLVNFLTLGSGGSLSYDFYNTSCPDVEDVVRETLAPIF
LTHPTAPAALLRLMFHDCQVQGCDASILLDTDHPRISSEMISSKNFGIKHRESIGIVKEAVESVCPNQVSCADIIVLAARESVAVSGGPYVEVALGRRDSTITDATLADTFLPSANVGVDEALRILTAKGLNLEESVAILG
AHTLGATHCVNIINRLYGPKADTGIILDFKMLLQLNCPLGVTLASNATFVANDPTSLAFDNQFYQQILTGKGLLRVDSEMQHSAFTSPLVARFADHQDYFFRVFSSAFLKLSSYQVLTGN
HGQIRKWCDRVN

Retrieve as FASTA  
Remarks Complete sequence from genomic
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAAAGCTTTTGCTCTTCCTTTTGGTGAACTTTCTCACTCTAGGCAGTGGGGGCTCTTTGTCTTATGATTTCTACAATACTTCTTGTCCGGATGTGGAAGATGTAGTGAGAGAAACA
TTGGCACCCATCTTTCTCACTCATCCTACTGCTCCTGCAGCTCTACTCAGGCTTATGTTTCATGATTGCCAAGTTCAGGTAGACCCATCTCTCTCTCTCTCTCTCTCTCTCTGTGTGCCT
GTGTTGCATGTGTGTGTTAATGGCTAAAGTAAAGGAACAATGTTGATTTGCATAGTATCACCAGAGTTCAAATCTCTTCGTCGAGTTTGGAGAAAGAAATTTTCATGAAGTATAAAACAG
TTATACCTACCATATTTAAATGGGTTGTTTCTCTGTCAAGTTTTTGAGTCTTTTTTGTTATCTTTTCTCTATATATAAAGGAAGAAATTTCTTTTGAGAAGGCAGATGCATCAAGCTACA
TAAATGCATAGTTTTGGAAAATGTTAGTTGAATCTAGGCATAAGGAAATATTTGAGCCATTTTATGTTTACCCAACTAGAATGCCATGATCTTCACTTTTTGTTTCATAACTATGGTTAG
TGGCCAAAATATGTCAGTTAGATCACTATGGGTGAAACGGGGGCAAAAACCTTGCTGATTTGTTCCAATCTTGTAAAATCATAAAGTTCATCATTTTCAAAACAATCATGGCATTCTCCT
TATTTTCATCAATGAATATTGTCTTGAATCTTGATTATGTGCATCTTCTAAGTTCTATGCACATGAATTGTATATGCACCAGAGTTTAGTATTACAAATGTCATTGCTCATGCGCGCATA
GCACACTTTGCATGTTCCACACATTCTATGAACACAAGGTAAGAAAATACCCACATATTTATACCACTCAATCCTCACTCTTCTTCAATGTCGGACTAAAATCCACACCTTTCTCTCCCT
CATGGCTACGTGAAACTTAGGTAAACTACAATAAAAGCTCATGTTATTTTGAAATACTTAGAAGTATTTCCCAAAATAAAAATACTAACAACATTTACATCATTAATTATGCATAGTATC
TTTAAAGCATTGAAATTAGCCATAAAAATAGTATTATTAGAAGCAAGTAGTAATAGTATTGTTGTTCTTTCTCTATCAGTTGAAATGGATCCATATCCTTATAACTTTAGAATTACTCTA
AGTCTCCCCAGGGGGCTGTGATGCATCAATCCTGTTAGACACTGATCACCCTAGAATAAGCTCAGAGATGATCTCTAGCAAGAACTTCGGAATCAAGCATCGTGAATCGATCGGGATCGT
AAAAGAGGCGGTTGAGAGTGTCTGCCCTAACCAAGTGTCATGTGCTGATATTATCGTCCTAGCAGCAAGGGAGTCTGTCGCCGTCTCCGGTGGGCCCTATGTCGAGGTTGCACTAGGCAG
ACGGGACTCGACCATTACAGATGCCACACTTGCCGACACGTTTCTTCCTTCTGCGAATGTTGGCGTAGATGAAGCACTTAGGATCCTAACCGCTAAGGGGTTGAATCTCGAAGAGTCCGT
CGCCATTTTAGGTAAATTCAAAAATTCAAAAATAACTAATAAAAAAGTAGTTAGACTTGTTCTAACATGCCATTCTCTTGTTATTTGAAAATTTCAATCATAAAAAACCAAAGCTAGGGT
TTGAACGTTGGTTTTAATGATGTGAAATTTCATAAGTACTGATTTATGGTGTTTTGAGTTTTGACAATAAAGTTCCTAAAACTTGCAAACTGAAAAATGTAAAATTTGTTTTCATTTTAA
GATGATTACATCACTGTAATGAAGTGAAATATTTCATAAGAAGTCTTCTTTTTTTGTCTTTTTTTTGTTCTTTTTGAGAATATCCTTCCCAAAGAGTCTTTTCAAAAGAATAGTGTTTGT
CATAAATGAGCATCAAGGGAATTTGATCATATCCTCTGCTAGATGGAAGCATAAACTCAGAAGTGGCCCCTTCTTGCAGCTTGCAAGAACTTAGAAATCTCTCTCTCTCTCATTATAACA
ATTGTACAGTACAATTCAACATCTCTCAATGCTGAGCATGTGGAGCTCTTGCAGGTGTGCACACACTCTAGGAGCCACGCACTGTGTGAACATCATTAACAGATTGTACGGCCCGAAAGC
AGACACCGGCATCATCTTAGATTTCAAAATGTTGCTCCAATTGAATTGCCCATTGGGGGTCACATTGGCTAGCAACGCAACCTTCGTGGCTAATGATCCGACGTCCTTAGCCTTCGATAA
CCAGTTCTATCAGCAGATTCTTACAGGGAAAGGGTTGCTAAGGGTCGACTCCGAGATGCAGCACAGCGCATTCACATCACCTCTCGTCGCACGATTCGCGGATCACCAAGATTACTTCTT
TCGTGTTTTCTCCTCTGCATTTTTGAAGCTCTCATCTTATCAAGTCTTAACAGGAAACCATGGCCAAATTCGAAAGTGGTGTGATAGAGTAAATTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAAAGCTTTTGCTCTTCCTTTTGGTGAACTTTCTCACTCTAGGCAGTGGGGGCTCTTTGTCTTATGATTTCTACAATACTTCTTGTCCGGATGTGGAAGATGTAGTGAGAGAAACA
TTGGCACCCATCTTTCTCACTCATCCTACTGCTCCTGCAGCTCTACTCAGGCTTATGTTTCATGATTGCCAAGTTCAGGGCTGTGATGCATCAATCCTGTTAGACACTGATCACCCTAGA
ATAAGCTCAGAGATGATCTCTAGCAAGAACTTCGGAATCAAGCATCGTGAATCGATCGGGATCGTAAAAGAGGCGGTTGAGAGTGTCTGCCCTAACCAAGTGTCATGTGCTGATATTATC
GTCCTAGCAGCAAGGGAGTCTGTCGCCGTCTCCGGTGGGCCCTATGTCGAGGTTGCACTAGGCAGACGGGACTCGACCATTACAGATGCCACACTTGCCGACACGTTTCTTCCTTCTGCG
AATGTTGGCGTAGATGAAGCACTTAGGATCCTAACCGCTAAGGGGTTGAATCTCGAAGAGTCCGTCGCCATTTTAGGTGCACACACTCTAGGAGCCACGCACTGTGTGAACATCATTAAC
AGATTGTACGGCCCGAAAGCAGACACCGGCATCATCTTAGATTTCAAAATGTTGCTCCAATTGAATTGCCCATTGGGGGTCACATTGGCTAGCAACGCAACCTTCGTGGCTAATGATCCG
ACGTCCTTAGCCTTCGATAACCAGTTCTATCAGCAGATTCTTACAGGGAAAGGGTTGCTAAGGGTCGACTCCGAGATGCAGCACAGCGCATTCACATCACCTCTCGTCGCACGATTCGCG
GATCACCAAGATTACTTCTTTCGTGTTTTCTCCTCTGCATTTTTGAAGCTCTCATCTTATCAAGTCTTAACAGGAAACCATGGCCAAATTCGAAAGTGGTGTGATAGAGTAAATTGA

Retrieve as FASTA