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Entry information : GmarCIIBC
Entry ID 11890
Creation 2013-05-24 (Nizar Fawal)
Last sequence changes 2016-02-01 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2017-04-19 (Catherine Mathe (Scipio))
Peroxidase information: GmarCIIBC
Name GmarCIIBC
Class Other class II peroxidase type C    [Orthogroup: CIIBC001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Cortinariaceae Galerina
Organism Galerina marginata    [TaxId: 109633 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmarCIIBC
start..stop		 S start..stop
GmarCIIBC12 585 0 1..354 1..354
GmarCIIBC09 583 0 1..354 1..356
GmarCIIBC07 581 0 1..354 1..357
ApraCIIBC01 579 0 1..354 1..355
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '11890' 'complement(join(64554..64622,64682..64759,64814..64908,64961..65127,65175..65215,65273..65287,65341..65557,65616..65681,65735..65803,65912..65970,66025..66089,66140..66263))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 66140..66263 122 N° 2 66025..66089 63 N° 3 65912..65970 57 N° 4 65735..65803 67
N° 5 65616..65681 64 N° 6 65341..65557 215 N° 7 65273..65287 13 N° 8 65175..65215 39
N° 9 64961..65127 165 N° 10 64814..64908 93 N° 11 64682..64759 76 N° 12 64554..64622 67
complement(join(64554..64622,64682..64759,64814..64908,64961..65127,65175..65215 ,65273..65287,65341..65557,65616..65681,65735..65803,65912..65970,66025..66089,6 6140..66263))


exon

Literature and cross-references GmarCIIBC
DNA ref. JGI genome:   scaffold_27 (66263..64554)
Cluster/Prediction ref. JGI gene:   271169
Protein sequence: GmarCIIBC
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   354 (332)
PWM (Da):   %s   37083.88 (34657.5)  
PI (pH):   %s   5.6 (5.13) Peptide Signal:   %s   cut: 23 range:23-354
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFARLTSIVWIALAASQLVKGAATAYKCSNGKVTANAACCALFPVVDLLQKDLFDGGECGEEAHSALRLSFHDAIGFSIHGLGGGADGSILAFNKTENAFHANGGIDDITDRQFPVFLE
SKLTAGDFVHLAAAVGTANCPGAPRLEFKFGRPAPKAPAPDLTVPEPTDSVTKILARFADAGFSPQEAVALLSSHTIAAADVVDPTIPGTPFDSTVGTFDTQVFLEVLLKGHLFPGNGSQ
AGEVLSPLAGEMRLQSDFAISQDSRTACFWQAMVNDQNRMVTEFKAAMAKLQVLGQNTAKLVDCSDIVPVPKSFTTNIKFPATFSKKDVQIACPKLAFPSLATVAGPAPTIPPV*

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTTCGCCCGTCTTACTTCTATTGTCTGGATTGCTCTCGCCGCATCTCAGCTTGTCAAGGGTGCCGCCACAGCGTACAAGTGCTCCAACGGCAAGGTTACAGCCAATGCTGCTTGT
TGCGGTATGTCAATGTCAAATTTTGAAGCCTTCGTGATATCCATTTTCTTCTAGCCCCTTGTTCCCAGTCGTAGACCTGTTGCAAAAGGATCTCTTTGATGGCGGAGAATGTGGTGAGGA
GGTAAATATCTAACCTTGGACTATCAGTGTTGGGTCTGATGGACCCTTGCTTCAGGCGCTCATTCTGCCCTTCGTCTCTCTTTCCACGACGCAATTGGATTCTCGATCCACGGTTTGTTT
TATTTGGGTGTCCAATGACTTATGGGTATTAAAGTAATCTCTCTTTCAGGTGGAAAGTTCGTTAATGATAGGTTCTGTTCGACCACATTCTAATAAATTTACAGGGGGGAGGGGGTGCTG
ATGGCTCTATCCTGGCATTCAACAAAACCGAGAATGCCTTCCACGCCAATGGAGGGTAAATAGCAATTGTTTTTTTTCCTATTACCCAATCTGAACTACTCTCTCAAGAAAATCGACGAC
ATCACCGACCGTCAATTCCCAGTCTTCCTCGAATCCAAACTCACTGCCGGAGATTTGTAAGTACTTACTTTGTATTATGACGAGGATTGTTCTTGAATATTCTATTCCAAATAGCGCGTC
CATCTCGCAGCTGCAGTCGGTACTGCTAACTGCCCTGGCGCTCCAAGACTCGAGTTCAAATTTGGCCGACCCGCGCCAAAGGCACCTGCACCCGATCTTACCGTCCCAGAACCAACAGAC
AGTGTAACCAAGATTCTGGCCAGGTTCGCTGACGCTGGGTTTTCTCCTCAAGAGGCGGTCGCACTTCTCTCTTCCCACACCATTGCCGCTGCTGTACGTTAGAGTCTCTGAAATTCTTAT
TCGACATGCTGACGTTTTCCCTACAGGAGATGTCGTTGATCCGGTGCATATTTTGTCATTCTAATTTGCCATATATCCCTTTTAAACCCTGCTTTTACAGACACCATTCCAGGAACTCCT
TTCGACTCCACCGTTGGCACTTTGTGAGTTGGCAGCATCGCTCCAAGGAAATAAGCTGACAGGTCTTTAGCGCGATACCCAAGTCTTCCTCGAAGTTCTCCTGAAGGGTCACTTGTTCCC
CGGGAACGGATCTCAAGCCGGAGAGGTCCTTTCTCCTCTCGCAGGAGAAATGCGCCTCCAGAGCGATTTCGCCATCTCCCAGGACTCGAGGACCGCTTGCTTCTGGCAAGCCATGGTTAG
TAAGTAACCTTTTACTGTACCCAACTTTTTCGAACGCTAACAATGATGTAGATATGACCAAAATCGCATGGTAACCGAATTCAAGGCTGCGATGGCTAAGCTCCAGGTCCTCGGACAGAA
CACCGCTAAGCTAGTCGACTGCTCTGATGTAAGTTTTTTTATATCCATCATACAACACCTTCGTCCAATATTATCCACCCAGATATCGTACCTGTCCCTAAATCCTTCACCACCAACATC
AAGTTCCCGGCTACATTCTCAAAGAAGGATGTCCAAATTGCGGTCAGTAATTTAATTGACCTCCGCCTGCCTAGGCAGCCCCATCTCATTACTCTTTCTAGTGTGCCCCAAACTTGCCTT
CCCGAGTCTTGCTACTGTTGCCGGACCTGCTCCCACTATCCCTCCTGTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTTCGCCCGTCTTACTTCTATTGTCTGGATTGCTCTCGCCGCATCTCAGCTTGTCAAGGGTGCCGCCACAGCGTACAAGTGCTCCAACGGCAAGGTTACAGCCAATGCTGCTTGT
TGCGCCTTGTTCCCAGTCGTAGACCTGTTGCAAAAGGATCTCTTTGATGGCGGAGAATGTGGTGAGGAGGCTCATTCTGCCCTTCGTCTCTCTTTCCACGACGCAATTGGATTCTCGATC
CACGGTTTGGGAGGGGGTGCTGATGGCTCTATCCTGGCATTCAACAAAACCGAGAATGCCTTCCACGCCAATGGAGGAATCGACGACATCACCGACCGTCAATTCCCAGTCTTCCTCGAA
TCCAAACTCACTGCCGGAGATTTCGTCCATCTCGCAGCTGCAGTCGGTACTGCTAACTGCCCTGGCGCTCCAAGACTCGAGTTCAAATTTGGCCGACCCGCGCCAAAGGCACCTGCACCC
GATCTTACCGTCCCAGAACCAACAGACAGTGTAACCAAGATTCTGGCCAGGTTCGCTGACGCTGGGTTTTCTCCTCAAGAGGCGGTCGCACTTCTCTCTTCCCACACCATTGCCGCTGCT
GATGTCGTTGATCCGACCATTCCAGGAACTCCTTTCGACTCCACCGTTGGCACTTTCGATACCCAAGTCTTCCTCGAAGTTCTCCTGAAGGGTCACTTGTTCCCCGGGAACGGATCTCAA
GCCGGAGAGGTCCTTTCTCCTCTCGCAGGAGAAATGCGCCTCCAGAGCGATTTCGCCATCTCCCAGGACTCGAGGACCGCTTGCTTCTGGCAAGCCATGGTTAATGACCAAAATCGCATG
GTAACCGAATTCAAGGCTGCGATGGCTAAGCTCCAGGTCCTCGGACAGAACACCGCTAAGCTAGTCGACTGCTCTGATATCGTACCTGTCCCTAAATCCTTCACCACCAACATCAAGTTC
CCGGCTACATTCTCAAAGAAGGATGTCCAAATTGCGTGCCCCAAACTTGCCTTCCCGAGTCTTGCTACTGTTGCCGGACCTGCTCCCACTATCCCTCCTGTGTAA

Retrieve as FASTA