View Redoxidase 12171

Entry information : LuPrx62(Lus10009934|PACid:23150133)

Entry ID	12171
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuPrx62(Lus10009934|PACid:23150133)

Name

LuPrx62(Lus10009934|PACid:23150133)

Class

Class III peroxidase [Orthogroup: Prx008]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx62 start..stop	S start..stop
LuPrx61	575	0	3..287	1..285
LuPrx170	486	4.93e-176	48..287	1..240
CclPrx07	443	2.27e-158	13..291	7..284
CsPrx15	443	2.35e-158	13..291	7..284

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	200584..200823	238	N° 2	200133..200324	190	N° 3	199852..200020	167	N° 4	199509..199768	258
N° 5	199295..199309	13
complement(join(199295..199309,199509..199768,199852..200020,200133..200324,2005 84..200823))

Literature and cross-references LuPrx62(Lus10009934|PACid:23150133)

DNA ref.	Phytozome 12: scaffold200 (200823..199295)

Protein sequence: LuPrx62(Lus10009934|PACid:23150133)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	291 (258)
PWM (Da):	31005.91 (27712.2)	Transmb domain:	i13-35o
PI (pH):	10.08 (10.20)	Peptide Signal:	cut: 34 range:34-291

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSAAGSSNMLRRSCLVTIAVAFLVLLAAGECSAQLSTNFYSKRCP
LLMKTVRSAVQSAVSKETRMAASLIRLHFHDCFVNGCDGSILLEDTASFTGEQTALPNAGSVRGFNVIKDIKSKVEKVCPGVVSCADILAIAARDSTAIAGGKSWKVRLGRRDSKTASLAAANSGVIPPPTATLNQLITRFQARGLSAKDMVVLSGSHTIGQARCVTFRNRIYNETNIDSSFARARQSKCPRAQNSGNNNLAPFDVTTPNLFDNKYYQNLIQQKGLLHSDQVLFNGGSTDSGLTW*

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction. 3' end is missing.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCTGCCGCCGGTAGTTCAAATATGCTGCGACGTTCATGTTTGGTGACGATTGCGGTGGCTTTCCTTGTGTTGTTGGCTGCCGGGGAATGTTCGGCTCAGCTCTCCACAAATTTCTAT
TCGAAGAGGTGTCCTCTTCTGATGAAAACAGTGAGATCAGCCGTTCAATCCGCCGTCTCCAAGGAAACAAGGATGGCTGCCTCTCTCATCCGCTTGCATTTCCACGATTGTTTCGTCAAT
GTACGTAATTACTTTCTTTAACTTAAGAAAATGTGGTTTTGTCTCATGATATTGAGAGAAAATTGACAATCATGCCTGCCAATAAATTAGGGACCCACTAATTTTTACCGTGTTATAATT
AAAATGAATCCTTGTGGGCCCCAATTTATTGGCAGTGAGATAGACAATTTTATTAAATTGTGAGACAAGAAACATTTTGCCGTAGATTAATACTATATATTACGTTAATTGATGAGTTTT
TTGGTGTTGGCTAAGACAGGGGGTTGTGATGGATCGATACTGCTGGAAGACACGGCTTCGTTCACAGGAGAACAAACTGCTCTGCCCAACGCAGGATCAGTGAGAGGATTTAACGTAATC
AAAGACATAAAGTCCAAGGTTGAGAAAGTCTGCCCAGGCGTCGTCTCCTGTGCCGACATCCTAGCCATCGCTGCTCGAGATTCCACCGCCATTGTACGAACACTACTCCATCTTAAATGA
AACATCTTATCTACCGTCCATTTCGATCTCTTGATCAATTGATTGATTCTCATGGATGGATCGATTATACTTAAATTACTTGCAGGCGCAGGGGGCAAAAGTTGGAAGGTGAGGCTTGGA
AGGAGGGATTCCAAAACAGCCAGTTTGGCTGCAGCAAACAGTGGAGTTATCCCTCCCCCTACCGCCACTCTTAACCAACTCATCACTCGCTTCCAAGCCAGAGGCCTCTCCGCTAAGGAC
ATGGTCGTTCTCTCTGGTAAGCAGCGGTAGATCAGGATGTGCGTATTGGACCGACTTGTATAGAATGTTAAATTCATTTCAAATTAATTTTGGCTGCAGGAGATCCCACACGATTGGACA
AGCAAGGTGCGTAACATTCAGGAACAGAATCTACAACGAGACCAACATCGACTCTTCGTTCGCAAGAGCCAGACAGAGCAAGTGCCCCAGGGCTCAAAACTCGGGGAACAATAATTTGGC
CCCATTCGACGTTACGACCCCCAACTTGTTCGACAACAAGTACTACCAGAACCTCATCCAGCAAAAGGGTCTTCTCCACTCTGACCAAGTCTTGTTCAACGGTGGATCGACTGATTCCCT
TGTACGATCTTACAGCTCTTTTATTTCTATGGATTTAAAAAATTGTTTAAAAAAGTCCAAAATACATACCCAATAATATGTAATAGGAAACCGCTAGAAATCAAAATTAAGATTTTTATA
ATCGAAAGCATATACATCCTCACAACAACCATCAAAACTTTTGAAAATATCTTTTAATTTTGTTTGTCTATTATTTGAAGGGGGGTTAACATGGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA