View Redoxidase 13238

Entry information : SpolPrx35 ( Spipo23G0034100)

Entry ID	13238
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2016-02-24 (Catherine Mathe)

Peroxidase information: SpolPrx35 ( Spipo23G0034100)

Name (synonym)

SpolPrx35 ( Spipo23G0034100)

Class

Class III peroxidase [Orthogroup: Prx019]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolPrx35 start..stop	S start..stop
LminPrx02	538	0	1..323	1..322
CescPrx85	509	0	23..323	10..310
CescPrx86	499	3.82e-180	10..322	1..313
NnPrx34	477	3.49e-171	3..322	10..328

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13238' 'join(2073446..2073509,2073769..2073917,2074015..2074203,2074278..2074443,2074509..2074915)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2073446..2073509	62	N° 2	2073769..2073917	147	N° 3	2074015..2074203	187	N° 4	2074278..2074443	164
N° 5	2074509..2074915	405
join(2073446..2073509,2073769..2073917,2074015..2074203,2074278..2074443,2074509 ..2074915)

Literature and cross-references SpolPrx35 ( Spipo23G0034100)

DNA ref.	Phytozome 12: pseudo23 (2073446..2074915)
Cluster/Prediction ref.	Phytozome Gene 12: 31516799

Protein sequence: SpolPrx35 ( Spipo23G0034100)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	324 (300)
PWM (Da):	35440.84 (32852.4)
PI (pH):	6.51 (6.51)	Peptide Signal:	cut: 25 range:25-324

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MERGSGLTSLLLLLLLLSSSYGNAELSRSYYAQSCPRAEEIVKEQVKLLYEKHGNTAVSWLRNLFHDCMVGGCDASILLVAAGGAMSEQTSQRSFGMRNFKYVATIKDALERECPKTVSC
ADIVALSARDGVALLGGPYVPMKMGRKDSRVSRLEAVEDSIPNHDSDISLVLSRFQSIGIGAEGTVALLGAHSVGRVHCVNLVHRLYPAVDPTLDPDYAAYLKGRCPSPEPDPAAVAYGR
NDRETPMTIDNMYYKHLLQHKGLLRVDQQLASDPSTAPFVAKMAADNGYFYERFAEALLLLSETNPLPSDQGEVRKDCRFVNSV*

Retrieve as FASTA

Remarks

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

AATTGTATGG TGGAACTCTA TTTTTGCCTG ATTTGTGTTC TTCGAGCATT GACGTCACCT CTGATGTCAT CGCCTTATTT CCTTTTTCAC GAATTCTTAA ATATATTATA TTTATAGTTC AGTTAAAAAA TTACAAAAAA TCGTATTCTT TTAGGAAAAT TCTAAAATAT TACTCGATAT TATATTACAT CCCTATGATT GATATAAAAA TTTTTCACTA TTTTTGGAAT CTTTTATCGA TTTATAATTA ATTTATTCAT TCTAATATAC TTTTAAAATT TCAAAAATTA GTATTTCTAG TTTTATAAAT TTTAAATTTA TGTGATTTAT TATACAATGA TTAAGTCACG TCAGTGACTC CGACATAACT CTACATTCTA GATAGGTTGG GATCAGCGAG GGAAAATAGG CAAGGGGAGG CCAAGACATA AAATCTATAA GATCAAACCA ATTATAGGTT TACCTGAACC AATTTGACTT TTCTCTCTCA CTCTCCCTCT CACTCCCTCT CCCTCTCCCC CTGGCAACAT TGACATGGAC AGAACCCCAG TGGCTACTAG TTAGTCTTCC ATGGCCAACC CGCCTGCCAA ACCCAAATTT ATGATGCGAC CTGAACTCCA CACACCAGGC TAGGTGGAAG CTCCTTACAT GGCATCACCT ATCTCACCTA CAAATATTCC ACTCCCAATA TTGCAAAGCA CTCCTCAAAT CTCCGAAAAA CCTCATGCGA ATAATGTTAA CATTTAACAG GCTTCATAAC ACCGCATCCA GTTTGACCCA AGTTTCTTGG ATGTTACTGA AAAGGGAAAC CTGCTCCGAA ACTACACAGT GATATCGGCT AAATGAACCC CGCCAGGAGA GGATCTCTTT CTCTCTCTCT TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCCACCC ATCATTCTTC CTCGACCCTT GTCATGGTTG GAAGTTCATT TCTCTCATAG CCCAGCCGGG TGGGACTCGC AAGCACCAGA TTGCCCAAGG ATGCTCCCTG CCCGTGGAAG CGATAGCTCC GGGCGATATT CCACGGGCAG TGCCGGCGGC CGCGGCGAAG GGCGGTGCAC GCCGGCGGCT ACCCGTAGGT GCCGTCAACT AAGGAGGCCG AATCATAGCA CCGATGGTGG GGGGGAAGTG GCCTTCCCCC ACGCGCAGCG ACCGTCGCTA CAGGTGGAAA CGGGCAAGCT TTTCAACCCT CCACCACCGG TGGTTGTCCG TCGGCGGCGC ATGACTCGGA CAAGCATGAA TCGAAAACGA ACAACGCACC CGTGACCCTC AGCAAGTTCC TTGCATCGTC TATCATATTT TTTATTGACG CGGACCCTCT GAGCGAGGGT CCGGAGATCC TCTCACATGG CCGCCATCAA TGATGGTCTT CTACCTAGTT CGGATCGGCC CGTCCTTCTC TTGCTTCTCC TGACAAGAGC ATCATAAAAA ATCATCACGG AGCAAAGTTT GGATCTTGGC CCCGTCGGAA AAGCTAGATT GGGTTTGACT TTTTTTTCTA GCCAATCTCG TTTGCTACCA GGTTCACACT TTCTGTGCCA AGCTGCTCAA ATAACCGCAG TCGAGTCGCA GATTTTGTCA CCCAGCGAAC ACCTGAGGAA GATGCATGCG GCCATCACTG CAGTGGGACT TTGACGGCGG AATAGCCTGG CGGCGCGGAC GTGGTGCCGG ATGAGGCGGC GGCGAATCGT CGGGACCCCC CCATTCCGCA TCCCGACCCC GTATAATAAT AGTAAATGGG AATTTTTAGC TCCTTGTAGT CATTGCAGCG GTGGTTGATG CGTTGCTTTC AACGCCCCCC TAAATCATGA TTCCTCTCAT CCACTAAAAA ATTTCCGCAA CGTTATCTTC GTCTGAACTC GTAGCTTCGG CCCCTGCTTT CAGCTCGAGA TGGATCTCTA TAAAGAGTGG ATACCAGATG GCCATGGTCA TCCATCACCC GGATCTCGAG AGGCACAGCC ATGGAGCGGG GTTCTGGTCT GACTTCTCTC CTCCTGCTCC TCCTGCTGCT CTCCTCCTCC TATGGTAAAG TTCGGCCTCT CTTCTTCTTC CCTCCCTCCA TTGCCACGAC CATGAGGCTC CAGTCCCTGC GGCAAGTAGC AACGAGAAAG GTTCTGTGGA CTCAGATCGA AGAAAGTAGT TCGAGTTTGG GTAAAACTTA GGGGCTTGAC GATCAATGAC GAGCTTGACT GGATCACCAT CTTGAGAATC GAAGAATGCG GTCGCAGTCT GGTAATCTTT CTGCTTCGAT GGATCTCTTC TAATGGGACT GATTCATTTG AAGGCAACGC GGAGCTCAGC CGGAGCTACT ACGCCCAGAG CTGCCCCAGG GCGGAGGAGA TCGTCAAGGA ACAGGTGAAG CTGCTGTACG AGAAGCACGG CAACACCGCC GTCTCGTGGC TCAGGAACCT CTTTCATGAC TGCATGGTCG GGGTAAGCCC GTTGGAGCTC GGCTCCTCGT CTCTTGTGCG TGTGAGAACG CTGGTTCGCG GTAAGTAGCT AACGGAGCGT GTCTTTGGGA GCGACGCAGG GATGCGATGC GTCGATTCTG CTGGTGGCCG CCGGCGGCGC CATGTCGGAG CAGACTTCGC AGAGGAGCTT CGGCATGAGG AACTTCAAGT ACGTGGCCAC GATTAAGGAC GCCCTCGAGC GTGAGTGCCC CAAGACGGTC TCCTGCGCCG ACATCGTCGC CCTCTCCGCC CGAGACGGCG TCGCCCTGGT GAGCCACCGG CGGTCCCTCT GGCGAGCCAG TGCCCGCTTA CCCACTTACG TTTGCTCCAC ACACGCGCGC AGCTGGGAGG GCCGTACGTC CCCATGAAGA TGGGGAGGAA GGACAGCAGG GTGAGCCGCC TAGAAGCAGT GGAGGACTCC ATCCCCAACC ACGATTCCGA CATCTCCCTG GTGCTCTCCC GCTTCCAGTC CATCGGCATT GGCGCAGAAG GCACCGTAGC GCTGCTGGGT ACCTGACTAT CTCCTTCCTA CTCGTGCGCG AAGTTGCAGA ACTTGATGCC GCAGTCTCTG CAGGAGCTCA TTCGGTGGGC CGCGTCCACT GCGTCAACCT GGTGCACCGG CTCTACCCCG CCGTTGACCC CACATTGGAC CCCGACTACG CGGCGTACCT GAAAGGGCGG TGTCCGTCGC CGGAGCCGGA CCCAGCGGCG GTGGCCTACG GCCGGAATGA TCGGGAGACG CCGATGACGA TCGACAACAT GTACTACAAG CACCTGCTGC AGCATAAGGG GCTCCTGCGG GTGGATCAGC AGCTGGCCTC CGACCCTTCC ACCGCCCCCT TCGTGGCAAA GATGGCCGCG GACAACGGGT
ACTTCTACGA GCGCTTCGCG GAGGCCCTCC TCCTGCTGTC GGAGACCAAC CCGCTGCCCA GCGACCAGGG GGAGGTCAGG AAGGACTGCC GCTTCGTCAA CTCCGTATAG

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAGCGGGGTTCTGGTCTGACTTCTCTCCTCCTGCTCCTCCTGCTGCTCTCCTCCTCCTATGTGGTAAAGTTCGGCCTCTCTTCTTCTTCCCTCCCTCCATTGCCACGACCATGAGGC
TCCAGTCCCTGCGGCAAGTAGCAACGAGAAAGGTTCTGTGGACTCAGATCGAAGAAAGTAGTTCGAGTTTGGGTAAAACTTAGGGGCTTGACGATCAATGACGAGCTTGACTGGATCACC
ATCTTGAGAATCGAAGAATGCGGTCGCAGTCTGGTAATCTTTCTGCTTCGATGGATCTCTTCTAATGGGACTGATTCATTTGAAGGCAACGCGGAGCTCAGCCGGAGCTACTACGCCCAG
AGCTGCCCCAGGGCGGAGGAGATCGTCAAGGAACAGGTGAAGCTGCTGTACGAGAAGCACGGCAACACCGCCGTCTCGTGGCTCAGGAACCTCTTTCATGACTGCATGGTCGGGGGGTAA
GCCCGTTGGAGCTCGGCTCCTCGTCTCTTGTGCGTGTGAGAACGCTGGTTCGCGGTAAGTAGCTAACGGAGCGTGTCTTTGGGAGCGACGCAGGGATGCGATGCGTCGATTCTGCTGGTG
GCCGCCGGCGGCGCCATGTCGGAGCAGACTTCGCAGAGGAGCTTCGGCATGAGGAACTTCAAGTACGTGGCCACGATTAAGGACGCCCTCGAGCGTGAGTGCCCCAAGACGGTCTCCTGC
GCCGACATCGTCGCCCTCTCCGCCCGAGACGGCGTCGCCCTGTGGTGAGCCACCGGCGGTCCCTCTGGCGAGCCAGTGCCCGCTTACCCACTTACGTTTGCTCCACACACGCGCGCAGCT
GGGAGGGCCGTACGTCCCCATGAAGATGGGGAGGAAGGACAGCAGGGTGAGCCGCCTAGAAGCAGTGGAGGACTCCATCCCCAACCACGATTCCGACATCTCCCTGGTGCTCTCCCGCTT
CCAGTCCATCGGCATTGGCGCAGAAGGCACCGTAGCGCTGCTGGGGGTACCTGACTATCTCCTTCCTACTCGTGCGCGAAGTTGCAGAACTTGATGCCGCAGTCTCTGCAGGAGCTCATT
CGGTGGGCCGCGTCCACTGCGTCAACCTGGTGCACCGGCTCTACCCCGCCGTTGACCCCACATTGGACCCCGACTACGCGGCGTACCTGAAAGGGCGGTGTCCGTCGCCGGAGCCGGACC
CAGCGGCGGTGGCCTACGGCCGGAATGATCGGGAGACGCCGATGACGATCGACAACATGTACTACAAGCACCTGCTGCAGCATAAGGGGCTCCTGCGGGTGGATCAGCAGCTGGCCTCCG
ACCCTTCCACCGCCCCCTTCGTGGCAAAGATGGCCGCGGACAACGGGTACTTCTACGAGCGCTTCGCGGAGGCCCTCCTCCTGCTGTCGGAGACCAACCCGCTGCCCAGCGACCAGGGGG
AGGTCAGGAAGGACTGCCGCTTCGTCAACTCCGTATAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAGCGGGGTTCTGGTCTGACTTCTCTCCTCCTGCTCCTCCTGCTGCTCTCCTCCTCCTATGGCAACGCGGAGCTCAGCCGGAGCTACTACGCCCAGAGCTGCCCCAGGGCGGAGGAG
ATCGTCAAGGAACAGGTGAAGCTGCTGTACGAGAAGCACGGCAACACCGCCGTCTCGTGGCTCAGGAACCTCTTTCATGACTGCATGGTCGGGGGATGCGATGCGTCGATTCTGCTGGTG
GCCGCCGGCGGCGCCATGTCGGAGCAGACTTCGCAGAGGAGCTTCGGCATGAGGAACTTCAAGTACGTGGCCACGATTAAGGACGCCCTCGAGCGTGAGTGCCCCAAGACGGTCTCCTGC
GCCGACATCGTCGCCCTCTCCGCCCGAGACGGCGTCGCCCTGCTGGGAGGGCCGTACGTCCCCATGAAGATGGGGAGGAAGGACAGCAGGGTGAGCCGCCTAGAAGCAGTGGAGGACTCC
ATCCCCAACCACGATTCCGACATCTCCCTGGTGCTCTCCCGCTTCCAGTCCATCGGCATTGGCGCAGAAGGCACCGTAGCGCTGCTGGGAGCTCATTCGGTGGGCCGCGTCCACTGCGTC
AACCTGGTGCACCGGCTCTACCCCGCCGTTGACCCCACATTGGACCCCGACTACGCGGCGTACCTGAAAGGGCGGTGTCCGTCGCCGGAGCCGGACCCAGCGGCGGTGGCCTACGGCCGG
AATGATCGGGAGACGCCGATGACGATCGACAACATGTACTACAAGCACCTGCTGCAGCATAAGGGGCTCCTGCGGGTGGATCAGCAGCTGGCCTCCGACCCTTCCACCGCCCCCTTCGTG
GCAAAGATGGCCGCGGACAACGGGTACTTCTACGAGCGCTTCGCGGAGGCCCTCCTCCTGCTGTCGGAGACCAACCCGCTGCCCAGCGACCAGGGGGAGGTCAGGAAGGACTGCCGCTTC
GTCAACTCCGTATAG

Retrieve as FASTA