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Entry information : PpaCSD01 (Pp3c20_17920/Cu/ZnSOD)
Entry ID 13916
Creation 2016-10-14 (Christophe Dunand)
Last sequence changes 2016-10-14 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-20 (Christophe Dunand)
Peroxidase information: PpaCSD01 (Pp3c20_17920/Cu/ZnSOD)
Name (synonym) PpaCSD01 (Pp3c20_17920/Cu/ZnSOD)
Class Cu/Zn SOD    [Orthogroup: CSD001]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaCSD01
start..stop		 S start..stop
PpaCSD02 270 3.86e-94 42..199 1..158
LeCSD01 229 4.72e-78 46..195 3..151
ThasCSD01-1 226 1e-76 46..195 3..151
HaCSD02 227 5.02e-76 16..195 50..231
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13916' 'complement(join(1771340..1771368,1771525..1771578,1771764..1771839,1771982..1772013,1772242..1772337,1772480..1772581,1773844..1774051))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1773844..1774051 206 N° 2 1772480..1772581 100 N° 3 1772242..1772337 94 N° 4 1771982..1772013 30
N° 5 1771764..1771839 74 N° 6 1771525..1771578 52 N° 7 1771340..1771368 27  
complement(join(1771340..1771368,1771525..1771578,1771764..1771839,1771982..1772 013,1772242..1772337,1772480..1772581,1773844..1774051))


exon

Literature and cross-references PpaCSD01 (Pp3c20_17920/Cu/ZnSOD)
Cluster/Prediction ref. Genebank:   5924012 [Incorrect prediction]
Protein sequence: PpaCSD01 (Pp3c20_17920/Cu/ZnSOD)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   198
PWM (Da):   %s   20473.1  
PI (pH):   %s   6.66
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTSQLYKAFINCSFLHAARCFSSILSSSHLTKLYCVCVFQVMAPTKAVCVLTSPSSNVSGVISFVDEGSGYTTVEGEIKGLNPGKHGFHVHALGDTTNGCMSTGPHFNPKGFEHGAPEDE
VRHAGDLGNVIAGDDGVAKVSLKDFQIPLTGADSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQAST*

Retrieve as FASTA  
Remarks (Chromo 20, 6 introns)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACCTCGCAGCTTTACAAAGCCTTCATAAATTGCTCTTTTCTCCATGCTGCGCGGTGTTTCTCCTCCATTCTATCGTCGTCCCATCTCACCAAACTCTACTGTGTGTGTGTGTTCCAA
GTTATGGCTCCTACCAAAGCCGTTTGCGTGCTCACTAGTCCCTCCAGCAACGTCTCCGGAGTCATCTCTTTCGTGGACGAGGGCTCTGGTATGGCTGCCCTCGTCTCGTCTCGTCTTTTC
CTGTCCTCTCGGATTCTCTTCCTCCCCATGTGATAGTTTATGGAGTTAAGCATAATTTAAAGCTGTTCACATTGAGTTTTGGAGTTGGGTTTTGGAAGGTTCTCCTGGCAGGCTCACGGA
TGATTAGTTGTTTAATCGTTGTCAGGTTTGGTATCGACTCAGAGCTGAAAGAGTCGTTTTTGCGCATCAGAAAGTGCATATTCTCAAAGTGTTCGTTTCGTTGGCTGTATGGAGCGTGTG
CTTGGTTGTGGGGTTTATCGTATGGAAAATGGCATGCGTTTTTAGGGTTTAGTCTCTGGAGTTTGCTTTCTTGTTTGAGGGTTTGATGGGTGCAGTGCGCGTCTATAGGTTTTGGTATTT
GGTCTCTCTGCTACATTTGGGATTTTCTTCAGGATTATTTTTGTTTCTAGCTTGGTTGGGGCATGGCAAGGTGTCTGGCTTAGGCTCTTGGCTCGATCACTGCATGTATGCCAGATCGTA
ATGCTTGACTGGACATAGTATGGTCTGAAGGTTTTTAAGAGTTTGTGCAGCGTCGAGAATGCCATTTGTTGCTTTTGGCAGATGTTACTGTGACGTAGTTCCTTGTTGTGCGTCGTCCTT
TAGCTTGATGTGTCGCGTAGTTGTGGGAAGTCTTTGATACGAGTCTGATACTACTTGTGATTGTCGTTTTTTTGTCTGGCGATTGATTCGTAACGTATGGCGCCTTGAGAAGCGATGCAA
ACATAAGGTGTTTAAATTTGGTGTTTATCAGGAGACAGTTGATAATCTTCGATGTGTAATTTATCTTAGACTGGATCGGGCGAATGACTTTGTTTTGTAGAGAAAATTTTTAATCCTTTT
CTTCGCTATCTGAAAAGGATCGTCCCCTAATCTACTTACTACGGATAGTCAGATGACAGTACGTCGTAAATGCTCATCCACTTAATCAGTCTCTTGTGAGGTCAAGGGTCAGCCCACTAT
TTTTGACCTCTAGAATATCGTTGACCTCACAACCTAACTGCTGCTACAAGGGTAGGATGTACTTGTTTTGTTTGTTTCTGACCGAGGCTTCATGCACCAGCGTCGTGCATTTCGTAGATC
TCCTGAGGTCTTTCTTTGTTGGCTAAAGCCAGTCTTTTTCTGAAGTTGCTTTGTTAGGGTTTTGCGCACTGTGCTTGTGAATACGCTGATCCGTAGTGGTCGTGACTCAGTTGCGATGAT
CTTGTAACTTAAACAGTAATGTCCTGACAGGAGATACACGACTGTGGAGGGAGAAATTAAGGGATTGAATCCTGGCAAACATGGATTCCACGTCCATGCGTTGGGGGATACAACCAATGG
CTGCATGTCAACTGGTGCGTCATTTGACTCATTGCTCTTTGAGAATAGTGAATGCATATATACTTTTTGTATATATAACCTGGCTCTTCGTCATGCTTAGTCTTGTATTCGTTCGTGGTG
AAGAATTTGCTTTTAATTGACCTTATTTGAACGCAGGTGTCCTCATTTCAACCCAAAGGGTTTTGAGCATGGTGCTCCTGAAGATGAAGTTCGTCATGCAGGAGACCTGGGGAATGTTAT
TGCCGGTGATGATGGTAAGGCTGCTGCTTGAGATTTAGGTTTGAAAATTTCCTGCTTCAGATTTGATGTTCTTGATATCTTTCATGTGTACAAGCTTTAGTTACTTTTGGAATATGATTA
TTTCTTTTCTATCGTTACATCTCAAGTGTCATGCGGTAATCACAGTTCTAGTCACTTCGTGATTGGAAGAGTTTGGATTTTGAGTTGCGGTTTTAATTTTGTTTCTTAAATGTATGTCTC
AGGTGTGTAGCTAAAGTCTCTTTGAAAGATTTCCAGGTACTACTTCAGCAATCCCGCACCGTTTTGATCGGCTGCCATCCTTTCTCGGTTCTGATCTGTTAATTAGAGGATACTGTGTGC
TTCTCTACGTGTCATTTGATCTCAACGCTTGAATTTCTGTGCAACCATTTCTGTGCAGATATTCCTTTGACCGGTGCAGACTCAATCATTGGCCGTGCTGTTGTCGTTCACGCCGACCCT
GATGATCTCGGAAAAGGTGGGTTGAACGTGTATGATGAGAAGATTTCAGTGTGGGAGTAGGATTTGATTCTAGTCAAACTTAGGCAGGCTGCAGATTTCTATCGATACTTGAAATCCCGC
TGACAGATCTTGTGTATACTAAGACTTCAAGTTCCAAGACGTTCATTTGTATGGTCCTGTTTGATGTGTTGTGGCTTCCAGGTGTGGACACGAGTTGAGCAAGTCTACTGGAAACGCCGG
TGGCCGAATTGCTTGCGGTGGGTGTTTGAACCTCTTCAAACGTTCTTTTGTACATTACAGGGGAATTCTACACTGATTATGTGCCAAGAGAAATATCGGCATCAAATTAAGATTCGGAAA
TGTTGATTGATCTTGATACAAGTTTTGATGATTGCAATTTTCTGTTGTTGCAGGAGAATAATCGGTCTTCAGGCCTCAACTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACCTCGCAGCTTTACAAAGCCTTCATAAATTGCTCTTTTCTCCATGCTGCGCGGTGTTTCTCCTCCATTCTATCGTCGTCCCATCTCACCAAACTCTACTGTGTGTGTGTGTTCCAA
GTTATGGCTCCTACCAAAGCCGTTTGCGTGCTCACTAGTCCCTCCAGCAACGTCTCCGGAGTCATCTCTTTCGTGGACGAGGGCTCTGGATACACGACTGTGGAGGGAGAAATTAAGGGA
TTGAATCCTGGCAAACATGGATTCCACGTCCATGCGTTGGGGGATACAACCAATGGCTGCATGTCAACTGGTCCTCATTTCAACCCAAAGGGTTTTGAGCATGGTGCTCCTGAAGATGAA
GTTCGTCATGCAGGAGACCTGGGGAATGTTATTGCCGGTGATGATGGTGTAGCTAAAGTCTCTTTGAAAGATTTCCAGATTCCTTTGACCGGTGCAGACTCAATCATTGGCCGTGCTGTT
GTCGTTCACGCCGACCCTGATGATCTCGGAAAAGGTGGACACGAGTTGAGCAAGTCTACTGGAAACGCCGGTGGCCGAATTGCTTGCGGAATAATCGGTCTTCAGGCCTCAACTTAA

Retrieve as FASTA