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Entry information : HaPNC17 (HanXRQChr13g0419491)
Entry ID 14571
Creation 2017-11-07 (Christophe Dunand)
Last sequence changes 2017-11-07 (Christophe Dunand)
Sequence status N/D
Reviewer Not yet reviewed
Last annotation changes 2017-11-23 (Catherine Mathe (Scipio))
Peroxidase information: HaPNC17 (HanXRQChr13g0419491)
Name (synonym) HaPNC17 (HanXRQChr13g0419491)
Class Plantacyanin    [Orthogroup: PNC001]
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus
Organism Helianthus annuus (Sunflower)    [TaxId: 4232 ]
Cellular localisation N/D
Tissue types Buds
Inflorescences
Leaves
Mixed tissues
Roots
Seeds
Siliques
Whole plant
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value HaPNC17
start..stop		 S start..stop
HaPNC18 234 9.31e-82 1..124 1..118
HaPNC21 195 2.85e-66 1..124 1..126
HaPNC19 195 2.85e-66 1..124 1..126
HaPNC13 195 2.85e-66 1..124 1..126
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 173209371..173209548 176 N° 2 173208991..173209187 195  
complement(join(173208991..173209187,173209371..173209548))


exon

Literature and cross-references HaPNC17 (HanXRQChr13g0419491)
Protein ref. UniProtKB:   Q9XEX2  Q2V4E9 [Fragment]  Q8L9P7 [Mismatch]
DNA ref. HanXRQ genome:   HanXRQChr13 (173209548..173208991)
Cluster/Prediction ref. Phytozome Gene 12:   19649394 UniGene:   At.20543
Omic ref. ePlant:   At1g65980
Other ref. AtProteome:   At1g65980 ATTED-II:   At1g65980 e-FP Browser:   At1g65980 Genevestigator:   At1g65980 TAIR:   At1g65980
Protein sequence: HaPNC17 (HanXRQChr13g0419491)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   124 (95)
PWM (Da):   %s   13050.57 (10085.0)  
PI (pH):   %s   8.49 (8.48) Peptide Signal:   %s   cut: 30 range:30-124
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAKGRGSALVAMVVSCLLLVTLQCELAHAATYVVGDGNGWTFNVA
GWEKGKNFNAGDVLVFNYPKGAHNVVVVSKAGYDRCTTTPSDKVYTSGKDQITLVKGLNNVICSFAGHCPSMKIEIFAS

Retrieve as FASTA  
Remarks
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTAAGGGAAGAGGTAGTGCATTGGTGGCGATGGTTGTGTCTTGTCTATTACTTGTGACGCTTCAATGTGAGCTAGCTCATGCAGCTACCTATGTCGTCGGTGATGGCAATGGTTGG
ACGTTCAACGTAGCTGGCTGGGAAAAAGGCAAGAATTTCAATGCCGGCGATGTCCTTGGTATCTTCTCAACATCTTATCATTACTTTCCATGCTTACATGATTATATATTTAGCTAAAAC
CAATGACTTAGCCTAATATGTGTGGATTTCTTTTTTTTATTGGTTAAATTAATAGTAACAATTTAATAACAAAGCAAGTGCTTATTTAATTGAATTATTGTTTATTTTATAATGGAAACA
GTGTGTTTAATTACCCAAAAGGAGCACATAATGTTGTGGTAGTGAGCAAGGCAGGGTATGATAGGTGCACCACTACCCCAAGCGACAAGGTTTACACAAGTGGGAAAGACCAAATTACCC
TTGTGAAAGGTCTGAACAACGTTATTTGCAGTTTCGCTGGTCATTGTCCTAGCATGAAGATTGAAATCTTTGCATCTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTAAGGGAAGAGGTAGTGCATTGGTGGCGATGGTTGTGTCTTGTCTATTACTTGTGACGCTTCAATGTGAGCTAGCTCATGCAGCTACCTATGTCGTCGGTGATGGCAATGGTTGG
ACGTTCAACGTAGCTGGCTGGGAAAAAGGCAAGAATTTCAATGCCGGCGATGTCCTTGTGTTTAATTACCCAAAAGGAGCACATAATGTTGTGGTAGTGAGCAAGGCAGGGTATGATAGG
TGCACCACTACCCCAAGCGACAAGGTTTACACAAGTGGGAAAGACCAAATTACCCTTGTGAAAGGTCTGAACAACGTTATTTGCAGTTTCGCTGGTCATTGTCCTAGCATGAAGATTGAA
ATCTTTGCATCTTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGACACTAA TAAACAAATA CGATAATCGC TTAGTCCTTC ATATTTTGTT TCACTGAACC ATGGCTAAGG GAAGAGGTAG TGCATTGGTG GCGATGGTTG TGTCTTGTCT ATTACTTGTG  ACGCTTCAAT GTGAGCTAGC TCATGCAGCT ACCTATGTCG TCGGTGATGG CAATGGTTGG ACGTTCAACG TAGCTGGCTG GGAAAAAGGC AAGAATTTCA ATGCCGGCGA TGTCCTTGTG  TTTAATTACC CAAAAGGAGC ACATAATGTT GTGGTAGTGA GCAAGGCAGG GTATGATAGG TGCACCACTA CCCCAAGCGA CAAGGTTTAC ACAAGTGGGA AAGACCAAAT TACCCTTGTG  AAAGGTCTGA ACAACGTTAT TTGCAGTTTC GCTGGTCATT GTCCTAGCAT GAAGATTGAA ATCTTTGCAT CTTAGAAGGA AAAATAGAAT AATAATAGTA ATAATTCTAA TAAATAATTT 
TACTTCTTTG CATTTATGTT TGTGTTAAAA GAGTTTCTTT TGGTTTAGTT ATTCTTA 

Retrieve as FASTA