Sequence Properties
first value : protein second value (mature protein) |
Length (aa): |
227 (300) |
PWM (Da): |
24745.49 (32138.9) |
|
PI (pH): |
8.22 (6.62) |
Peptide Signal: |
cut: 25 range:25-324 |
|
Sequence
Send to BLAST
Send to Peroxiscan
|
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MHLERNHLRS SGLPEAPLRM RLYDCFLRIG CPSWSVVSGR RDGLVSSAQI NPSIFPPSLP YYPFFENRFT RKGASEREMV VLSGAHKIGI THCGLIQAQV YNSTGPEIVD PILEPTMAAQ
LNKQCPFGAV MNEVLIDPTS GSNNFDCRLF SRAQNNQAVF ISDAASTTNV SGRAIVLEEA PRSNAPFLDD FAAAMEKMSK IQGLSKPANL SVGIVGFSIR DRLSAAT*
|
Retrieve as FASTA
|
|
Remarks |
Pseudogene from enomic. Incorrect prediction from Phytozome. Exon 1 and 2 and GEIR are missing. Also pseudo in Mpolmon and Mpolpol. |
DNA ►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGACTCAC ACCATCTTTC AAAATATGTC ATGGAAATGA AGCTTTGGAG ACCCCGAAGA GAATGAGATC TAGATTCACG CAAGGCTTTT CTTTCGAAGA CCATAAAGCG CCCGACCGAT
TTCGATTCTG AAGAAACTCA CAACACTCTA TGCATCTGGA ACGGAATCAT CTTAGGAGCA GCGGGCTGCC AGAAGCTCCT CTTCGAATGC GGCTCTATGA TTGCTTTTTG AGAGTAAGTG
ATCATTTTAT TCTCTGCAGT GATAGGGATG ATTCAATCCA AAGTTTGACT TCAGATGCTT GTATTTCCCT ACTAGAATCG TACTGAATTC TGAATTCAGT ACAATTCAGT AAAATTCACT
CTAAATTCAG AGTATCAAAA TGACCAGCCT TGGTCAGCTA TCTTGGCGGG CAACTCGAAC CTTCTCCTGT GCTCTGATGC ATTTCGCTTC TTAAAGTCTA CTCTCTCAAG CGAGATCATG
TATTAAAATC GCACCGTCCA CGTAAATTCC AAATTTTTAT TCTCTAAGCT GGCAGGCTTC TCGACTAACA TCTGGATCTC TGAACCAATT TGCTGCAGAT TGGATGTCCC TCCTGGTCCG
TAGTTTCTGG TCGAAGAGAT GGTTTGGTTT CCAGTGCACA GATAAATCCC AGCATTTTTC CGCCTTCTCT CCCATATTAC CCATTCTTCG AGAACAGGTT CACGAGGAAA GGAGCTTCAG
AGAGGGAGAT GGTCGTCCTT TCAGGTAGTA TGTACAGATT CATTTCCGTT GCTTTCACAA TCTCCACACT CTACGAGTCA GTAAATAGAT TTTACAAACT TATCACTCCA CAACTGTACG
GAAGTTCATG GACAAGACTG ACTGAACCGA GAGCAGGTGC TCACAAGATC GGCATCACAC ATTGCGGATT GATCCAAGCC CAAGTCTACA ACTCAACTGG CCCCGAGATA GTGGACCCAA
TCTTGGAACC GACTATGGCA GCTCAGCTGA ACAAGCAGTG TCCTTTCGGA GCTGTGATGA ACGAAGTACT CATAGACCCA ACCAGTGGCA GCAACAATTT TGACTGCAGG CTCTTCAGCA
GGGCTCAGAA CAACCAGGCA GTGTTTATCT CGGATGCTGC ATCGACTACC AATGTCAGCG GCCGAGCCAT CGTCTTGGAA GAAGCACCGC GTTCCAATGC TCCTTTCCTC GATGATTTTG
CCGCTGCCAT GGAGAAGATG AGCAAGATCC AAGGCCTGAG CAAACCAGCT AATTTATCAG TCGGAATTGT AGGTTTCTCA ATTCGTGATC GACTCTCCGC TGCAACTTAA TGCAGTTCGT
CTCGAACGCC TTGCAAGCAA CAAAGGTAGC AGTTTTCGGA TCCTGAAGTT CACCACAAGT AAGTACCTCA AATCTCTCAC TTCCCTCGAA TGCCAAGTAA AAGCGTCACG TCTTGTTCGA
CGGACTCGGA CAGTGAAAGT TATATGGAGC TTATCTATAC TCGGGAAGTC CAAAGGGATG TTTGGACTAT CCGAGGACAA ACAAATTATA GTAATCCTTC AACCTGGATG CGTAATGATG
TTCAACATGG AG
|
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGCATCTGG AACGGAATCA TCTTAGGAGC AGCGGGCTGC CAGAAGCTCC TCTTCGAATG CGGCTCTATG ATTGCTTTTT GAGAATTGGA TGTCCCTCCT GGTCCGTAGT TTCTGGTCGA
AGAGATGGTT TGGTTTCCAG TGCACAGATA AATCCCAGCA TTTTTCCGCC TTCTCTCCCA TATTACCCAT TCTTCGAGAA CAGGTTCACG AGGAAAGGAG CTTCAGAGAG GGAGATGGTC
GTCCTTTCAG GTGCTCACAA GATCGGCATC ACACATTGCG GATTGATCCA AGCCCAAGTC TACAACTCAA CTGGCCCCGA GATAGTGGAC CCAATCTTGG AACCGACTAT GGCAGCTCAG
CTGAACAAGC AGTGTCCTTT CGGAGCTGTG ATGAACGAAG TACTCATAGA CCCAACCAGT GGCAGCAACA ATTTTGACTG CAGGCTCTTC AGCAGGGCTC AGAACAACCA GGCAGTGTTT
ATCTCGGATG CTGCATCGAC TACCAATGTC AGCGGCCGAG CCATCGTCTT GGAAGAAGCA CCGCGTTCCA ATGCTCCTTT CCTCGATGAT TTTGCCGCTG CCATGGAGAA GATGAGCAAG
ATCCAAGGCC TGAGCAAACC AGCTAATTTA TCAGTCGGAA TTGTAGGTTT CTCAATTCGT GATCGACTCT CCGCTGCAAC TTAA
|
Retrieve as FASTA
|
|
cDNA►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGACTCAC ACCATCTTTC AAAATATGTC ATGGAAATGA AGCTTTGGAG ACCCCGAAGA GAATGAGATC TAGATTCACG CAAGGCTTTT CTTTCGAAGA CCATAAAGCG CCCGACCGAT
TTCGATTCTG AAGAAACTCA CAACACTCTA TGCATCTGGA ACGGAATCAT CTTAGGAGCA GCGGGCTGCC AGAAGCTCCT CTTCGAATGC GGCTCTATGA TTGCTTTTTG AGAATTGGAT
GTCCCTCCTG GTCCGTAGTT TCTGGTCGAA GAGATGGTTT GGTTTCCAGT GCACAGATAA ATCCCAGCAT TTTTCCGCCT TCTCTCCCAT ATTACCCATT CTTCGAGAAC AGGTTCACGA
GGAAAGGAGC TTCAGAGAGG GAGATGGTCG TCCTTTCAGG TGCTCACAAG ATCGGCATCA CACATTGCGG ATTGATCCAA GCCCAAGTCT ACAACTCAAC TGGCCCCGAG ATAGTGGACC
CAATCTTGGA ACCGACTATG GCAGCTCAGC TGAACAAGCA GTGTCCTTTC GGAGCTGTGA TGAACGAAGT ACTCATAGAC CCAACCAGTG GCAGCAACAA TTTTGACTGC AGGCTCTTCA
GCAGGGCTCA GAACAACCAG GCAGTGTTTA TCTCGGATGC TGCATCGACT ACCAATGTCA GCGGCCGAGC CATCGTCTTG GAAGAAGCAC CGCGTTCCAA TGCTCCTTTC CTCGATGATT
TTGCCGCTGC CATGGAGAAG ATGAGCAAGA TCCAAGGCCT GAGCAAACCA GCTAATTTAT CAGTCGGAAT TGTAGGTTTC TCAATTCGTG ATCGACTCTC CGCTGCAACT TAATGCAGTT
CGTCTCGAAC GCCTTGCAAG CAACAAAGGT AGCAGTTTTC GGATCCTGAA GTTCACCACA AGTAAGTACC TCAAATCTCT CACTTCCCTC GAATGCCAAG TAAAAGCGTC ACGTCTTGTT
CGACGGACTC GGACAGTGAA AGTTATATGG AGCTTATCTA TACTCGGGAA GTCCAAAGGG ATGTTTGGAC TATCCGAGGA CAAACAAATT ATAGTAATCC TTCAACCTGG ATGCGTAATG
ATGTTCAACA TGGAG
|
Retrieve as FASTA
|
|