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Entry information : PbPrx13
Entry ID 1700
Creation 2007-09-18 (Christophe Dunand)
Last sequence changes 2007-09-18 (Christophe Dunand)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2011-01-28 (Qiang Li)
Peroxidase information: PbPrx13
Name PbPrx13
Class Class III peroxidase     [Orthogroup: Prx003]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus balsamifera (trichocarpa x deltoides)    [TaxId: 3695 ]
Cellular localisation N/D
Tissue type Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PbPrx13
start..stop		 S start..stop
PtPrx26 496 1.02e-178 1..328 1..328
NtPrx47-1A 402 4.31e-141 1..327 35..362
NtPrx[P]47-1A 398 5.4e-140 1..327 1..328
NtPrx48-1B 397 1.39e-139 10..328 11..331
Literature and cross-references PbPrx13
Literature Ralph,S., et al., Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences. Mol. Ecol. 15 (5), 1275-1297 (2006).
EST ref. GenBank:   CA824142 [5' end]  CV276000 [3' end]
Protein sequence: PbPrx13
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (305)
PWM (Da):   %s   29793.85 (27071.6) Transmb domain:   %s   i20-42o
PI (pH):   %s   8.57 (8.49) Peptide Signal:   %s   cut: 24 range:24-328
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRGFRYFGMM FFCLLVFMGS TEAQLQMGFY SSSCPNAERI VQDYVNRHIH NAPSLAAAII RMHFHDCFVR GCDASVLLNT TSSNNQTEKV ATPNLTLRGF DFIDKVKSLL EAACPAVVSC  ADIVALVARD AVVATGGPFW RVPTGRRDGT ISRSSEAxNN Ixxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxPAL DSEYAANLKA RKCRSLNDNT 
TIVEMDPGSF RTFDLSYYSL LLKRRGLFQS DSALTTNSAT LSFVNQLLQG PLQNFFAEFA NSMEKMGRIN VKTGTTGEIR KHCAVVNS 

Retrieve as FASTA  
Remarks Partial sequence from 4 ESTs. No overlap between 5'and 3' ends (missing sequence).