Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
244 |
| PWM (Da): |
26422.88 |
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| PI (pH): |
4.89 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MTFIEKPVVF PCKSLRGFEL IDEAKAALES RCPNTVSCAD VLAFAARDAA RFTGGFYYGL PGGRRDGTVS RESEVGENLP GFNSNAEELR DEFAKKGLSL EDMVALSGAH SIGVSHCSSF
SSRLYDFNST HSQDPSLDAD LADYLKKCCP PPGTEGDTVD LDVATPKILD VHYYRNLKKG KGLLTSDQML WASSLTADMV ASFSKNPEVW FHKYAEAMER MGGIDVLTGN EGEIRVKCSV
VNGY
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Retrieve as FASTA
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| Remarks |
Incorrect prediction from Lemna.org. Exon 1 and start of exon 2 are missing/ Not found upstream. |
Promoter►
Send to BLAST
Send to cis Analysis
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Terminator +►
Send to BLAST
Send to cis Analysis
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
AGCTTTGTCC AGCCCTCTGC CGCGCCATTT ATTCCCCCCT ATTCTTTTAT TCTTCTCCTA TTTTACACCA AATAAACGCC TTGCAGGGCT CCGCCATCTG CTATCCATCT GCGTCATGTA
ATCTCCACGA AATGTCAAAA AATTACAGGC AATAATTGAC AGGGTTCTTG ATCTTCACGT CGTGGTTAGA GTGTTATAGG CGGCGTTTCT AGCCCGGAGA GGTTGATTCT CCAAGTACGA
TGAGCATTTC CTGGTTAGTT CTTCAATACT GATCTTTTCT TCGAATTGGG TTTTCTGCGA TCCAACAACC CTGTTAAATG TAGGAGTGGA TCACATGATC CATGCTCTAA GATTCTTATT
TAATATATGA GATTTGTTCA TTGTGGTCTT CAATGATTGG AATTATGAAA ACATTTGGTA TAGGAGCCAG ACATGCTCCA ATTTTTTCTT TCATGTTTTG ACCGATGATC TCTCAGTTGA
TTTTTTCCGT CCCCCCAATC ATCCTTTTGG CCAAGAATTA CAAATAGTGT TCGTATCTCC TAATGGAAAT ACGAGTGTTA TTTTATTTGG TTATAGAAAA ATATTTAGGT GTAGTTGGTT
ATCCCTACTC TCTCTCTCTC TCTCGTTACG CGAAAATCAC TTTTCCTGAT AGGAGAACGT CTCCGGCCTG TAGAAAATAA TTCTAAATTA TACGATACAG GTTACATGGT CCCTTCTTTC
ATGCTTCGTT CAAGGATATG TTCGAGGAAA TACGGATAAT CAATTTAAAT TTCCAGCTGC GATTTTTCTT ATCAAACACA AGGACAAGTG CTCAAGAACA TGAAGAACAG AAAAAAAATG
AGAAATAAAG TGAAAGATCG ATTGGATTTG AGAGGACACC GAATGAAAAC AGAAGAAAAT AAGAAAATTT GATTGGAAAC ACAGAATCAC CATCAAAGAA CAGAAAAAAG AACCAGAATC
CAAGAAGACC TCCCAGAAAA TGAAGAACGT GATCAAGATT TTTCTAAAAA GGAAACCCAT TGTTAGAACT CCCCTTGATC TTGATCTTTT GGCTTCGAGG TCACTGTTGA AACCTAGAGA
AATCAAGATC AAGATCTCTG AATGCATGAA ATTACTTAAA ATCACAAAGA TGAGATCAAG GAATCTTGAA ACAGATTGAA GCAGAAAACC AATCAAGAAC ATAAAAGAAT TTTGCACTGA
ACTGAAGTCT ACGGCAAGAA CTACCTAAGC AAATAGGAAC TGGAACAAAT GAGAACCTTG GAGAGTATTT CTACTCCCTA TCCATAATTT TTATAGAGAG AGAGAGAGAA GCACACTCGA
TTTTTAATGA AATTTTAAAG AAATGGCGGT CAATACTTCA ATTTTAACTT TTTACTGAAA TTTCAAATTT TAAATAAAAG ATTATGAATA TTAGTTTTAG CTCTTGCACG ATGACAATGT
CACATCATCC CTCTTGCGTA GAGAGCATAA CCACTATGAC CAGATTAGAA CCGTCATTGA CGTGTATTGG GATTTGCTTA TTCACCAACC GGATATTCAA AATACGTCAA AAGCAACTCT
GATTTTTCTT TGGCTCGAAC ACAGTGACGT CTACCGCACG GGAAAAGAAA GAAGAGTCAT GGTGGGACAA ACTGGGAAGT GGAGTGTTGA GAAAACAAGA GGACTGCATC CATATGCACA
ACCCCTAATG CCACGCACTC TATTCTTTGT TCATTTAGTT TCCTATGTCA TGACGTTTAG GATCTCAATT TCGAAGAGGG AATCTATCGT TTTTGAGGTA TCATTCATGG TCTTCATCCC
CCTTTGGATC TTTGTTGTCT ATACTTTGAA AGGGTTTCCG AGTCCTATAT GATTGAACGG ATGAAGTAGA TCGCTCATAG CATGAATGAA CGTAGACATG CTGATCCTAA AACCTGATTC
TTCTTTGAAT ATGCGCCGAG CCACTTCATT CAATAATAGT TATTCAGCAA TAGCCTGTCT TTTATTTTGT CTTTCTTCAA
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Retrieve as FASTA
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DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGACATTTA TAGAGAAACC GGTGGTTTTC CCATGCAAAA GGTTTCTTGA AACCATCGAA ATATCATTTG ATACTTTTAA ATCGTTCAAT ATCTAACAAG ATAGTCTAGA AAAGTACGTT
CAGCATTTTA TTATCCTTCA ACTAGAGGTG ATTCAAAATA TGTAACTTAG TTATAAAGGC GAAACCATAG ATTACATGCA AAAATAATTT GAATAATTTC TATGGATAGC AAGCATCAGA
AATCTAAAGA GCGATCCATC AACTCTGTTA AATCTACGAG TGGATCACAT GATCCATGCT CTAAGATTAT TATTTAAAGA TGATCCACAA GATTAAATAT ATGAGACTTG TTCATTGTGG
TCTTCAATGA TTGGAATTTT GAAAACATTT GGTGTACGAG CCAGTGATCA AACGACGGAG ACAATTTTTT CTTTCATGAT TTGACCAATG ATCTCTCGGT TGATTTTTTC TGCCCTCCAA
ATTATCCTTT TGGCCAAGAA TAACTACTAG TGTTCTTATT TTTAGATTGT TAGTCAACAT TGGAAAGTTA AACCAGAAGA TCGAAGATTC AATCTATGAA AGCCTCCCGA TCCTACTTGC
CTACACACAT AATGGATACA ATAAGTTGAA ATCCAAGTCT GCGAGGTTTT GAGCTGATAG ACGAAGCCAA GGCTGCCCTC GAGTCCCGCT GCCCCAACAC TGTGTCTTGC GCCGACGTCC
TGGCCTTCGC AGCTCGCGAC GCCGCGCGCT TCACCGGAGG CTTCTACTAC GGGCTTCCGG GAGGAAGGAG AGACGGGACG GTCTCTAGAG AGTCGGAGGT CGGAGAAAAC CTACCGGGTT
TTAATAGCAA TGCCGAGGAA CTAAGAGACG AGTTTGCGAA GAAGGGCTTG TCCCTGGAGG ATATGGTGGC GCTCTCGGGC GCGCACTCCA TCGGCGTCTC CCATTGCTCG TCCTTCTCTT
CCAGGCTTTA CGACTTCAAT TCCACGCATT CCCAGGATCC TTCCTTGGAC GCCGATCTTG CCGACTACCT CAAGAAGTGC TGCCCGCCTC CGGGGACGGA GGGCGACACT GTGGATTTGG
ACGTCGCCAC GCCCAAAATC TTGGACGTGC ACTACTACAG AAATCTCAAG AAAGGGAAGG GCCTACTCAC CTCCGATCAG ATGCTCTGGG CCAGCTCCCT CACGGCCGAC ATGGTGGCCT
CCTTTTCAAA GAACCCCGAA GTCTGGTTTC ACAAGTACGC CGAAGCGATG GAGCGAATGG GTGGCATCGA TGTCCTCACC GGGAATGAGG GGGAGATCAG GGTCAAATGC TCTGTCGTCA
ACGGCTACTG A
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGACATTTA TAGAGAAACC GGTGGTTTTC CCATGCAAAA GTCTGCGAGG TTTTGAGCTG ATAGACGAAG CCAAGGCTGC CCTCGAGTCC CGCTGCCCCA ACACTGTGTC TTGCGCCGAC
GTCCTGGCCT TCGCAGCTCG CGACGCCGCG CGCTTCACCG GAGGCTTCTA CTACGGGCTT CCGGGAGGAA GGAGAGACGG GACGGTCTCT AGAGAGTCGG AGGTCGGAGA AAACCTACCG
GGTTTTAATA GCAATGCCGA GGAACTAAGA GACGAGTTTG CGAAGAAGGG CTTGTCCCTG GAGGATATGG TGGCGCTCTC GGGCGCGCAC TCCATCGGCG TCTCCCATTG CTCGTCCTTC
TCTTCCAGGC TTTACGACTT CAATTCCACG CATTCCCAGG ATCCTTCCTT GGACGCCGAT CTTGCCGACT ACCTCAAGAA GTGCTGCCCG CCTCCGGGGA CGGAGGGCGA CACTGTGGAT
TTGGACGTCG CCACGCCCAA AATCTTGGAC GTGCACTACT ACAGAAATCT CAAGAAAGGG AAGGGCCTAC TCACCTCCGA TCAGATGCTC TGGGCCAGCT CCCTCACGGC CGACATGGTG
GCCTCCTTTT CAAAGAACCC CGAAGTCTGG TTTCACAAGT ACGCCGAAGC GATGGAGCGA ATGGGTGGCA TCGATGTCCT CACCGGGAAT GAGGGGGAGA TCAGGGTCAA ATGCTCTGTC
GTCAACGGCT ACTGA
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Retrieve as FASTA
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