Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
253 |
| PWM (Da): |
27476.82 |
Transmb domain: |
i21-40o |
| PI (pH): |
7.13 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
PVQSQHPFLD ASMPKHIVRE VVGNIIAANA GIGT*LIWLH FHDCFIKxxx ALVLLEGDDC ERMHPANLNS V*GFEVVDEA KVALEFQSLN TVSCADVLAF AAHHVVEFTD GFSYNVLAGR
HEGRVSIKSN VNALPKFSID AQKLHDDFDK KGMSLKEMVA LSSVHSLGIS HCSSFSDRLY HFNTTQSQTI SRVIICFQEP NATSSLTMNM VESFAKKPNL WTKNYPKAMV RMGAIEILTG
SKSEIRVKCS VVNCN
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Retrieve as FASTA
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| Remarks |
Incorrect prediction from Lemna.org. Start of exons 1 and 2 are missing, two stop in frame. |
Promoter►
Send to BLAST
Send to cis Analysis
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Terminator +►
Send to BLAST
Send to cis Analysis
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
AGCCCCCGGT GAACGTATAT CATGCCCTTT CTTTCACATA CTCTTCATCC CTCCACAAGG TTTTCATGTT AAGTAAATTA CATGAAATGT ACAACCATCT GGAAAACTCA AATAAAATTA
AATTGATCAA CTTCTTGTGA AGATTGATGA ATCCAAGAAG AACGGATGGA AAACCAAGAG AGTCCACAAT CACCCCCTAT GATTCAAACT CAAAAAAAGT ATAAATCTGA ACAAGGAAGG
CATAGTTCAA ATCAAATAAG AATTTAAAGA GCTCGTGAGG CACTAATCAA GGATTAACAA TTAATGTGGA GAAGATATCT CACACACGAA TATCTATAAT TGAGTCAAAT CAAGCTTAAT
CCATGGAAGC AATAACCTTG TGGAAAATAA GAGGAAAATA ATTAGAAATA TGATAGTATA ATAGGTCTAA TGGGCTAGTT TTAATGTTTT CTTGTATTTA CGTCTTGTAC CAGTCCCCCG
CAATGTATAA GTACAGGGGG TTCTTGTTCT TAATACATAC CCTCTAAAGT TAGTTTCTTC ACAAGGTTTC AAAGCATGCC CCTTAGATTT TATCTTTTTC ACCGACTCGC TCCCATAGGC
GGCACTTTCC ATTACCATCA TGGTGCAGAG TTTTCTTTCT TCTTCCTACC ATTACCTTTC TTGGCAAGTT TCTTTCTTTT TCTCAAAGTT GGTATTGAGC ATAACTCTAG GCATTGGAGG
TCGGGACTTT GAGCCCTACC TACCATTTGA GCGTGCCCAT GTTTTCCTGC CACTACAAGT GCATCGCACG TGTATCTTGC CGCCACGCAT GCAGGCCTTG TTGTTGCCAG CCTCGCATGC
CTGATCTACC AATGCAAGCC TTAGAAAACT TAATGTCGTA TCTAATCTAT GGTATTTTGG AAATCCCATG GCTAGGGATT CTTAAGTCAT AGTCAAAACA TGATTATCCA TCCACAAGAT
GGCTTTGGTG TCTCAGGTCC AAGGATCACT TACACAACTG TGACGTGAAT CGACTTAATT GATAATTAGG TATAATACCA TTCAGGGATC CATATGGATA AATTCAGTTA ACTCTTTCAC
CAGAGAGGAC CCACTATCTA TCATTAGTAT CTTTGTACTA ATGGCCACTA GATCAGCCAT ACTTATCATT TGAGTCAGAT CGTATAGTGT TATTCTTTCC AGATATTTCA ATGTTTTTTA
TCAAATATCC CTTGAATAGG AATATTTAGA GAATATAAAT AAAGACTAGT GATCTTTGTA TTATGATCTT ATCATAATTC ACTTAGTCAT TGTATATGCT CATGAACTTT ATTACAAATA
TCACACTATA ATGGAAATAA ATAAAGTTTT ATTTTAATGT ATTTAAGGGA GCCATGGAAG TGTGATTTAA CTTATAGGCC ACATCATATC CATCAGTCCT TATGTTGCCT ACCGCTCTCT
CTCTCTCTCT CATCCATGGC ATTTCATTTA AGATTTGCCG CTTGTATCTT TTGTTTAGTA CTCTAACACA AATTTCAAAA TCATCATGCG CATTGTTTTC GATTCTAGAG AAATCCCAAG
AAATCTCACT TGTTAACGAT CAAGGGAATA TTTTGATAAC TTATAGGGAC TTAGAACATA GGGGAATGGT ACCCCCAAAG ATAAAGATCT TGAGCTTGTT ATGATGCCAA TATTTTTTGA
TGTAGAGTTG AAAGAAAGAG TACAAGTTTC TCTTGTCACT TTTTCAAAGG ATGCATGATT TCTTGGAACT CGAAGAAGCA AAACTCTATA GTATTATCTA AATTTAAAGC CAAATATGTG
TCAATCGGGA TTTGTGTGGA AAGAGCGCTT TAGATGAAGC ATCAACTAAA GTACTATGGA ACTTGTGGAA AGAGAGTTCT AGGTTTTGAT TAAAGAAGAA GAAGGGGGGT GCCTCCTCTT
ATATAGTGAG GAGGGACCAT ACAAGTAGAG AGAGACAATG TCATAGTAAT TACAGAAATG CCATTATATG GCACATACTC
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Retrieve as FASTA
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DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGCTTTGGT GCTCCTCGAG GGTGATGACT GTGAGAGAAT GCACCCTGCC AACTAAACAG CGTGTGAGGT TTTGAAGTGG TTGATGAGGC TAAGGTTGCG TTGGAGTTTC AATCCCTGAA
CACTGTTTCC TGCGCCGACG TCCTAGCCTT TGCCGCCCAC CATGTTGTCG AGTTCACCGA CGGCTTCAGT TACAATGTCC TAGCCGGGAG ACACGAAGGG AGGGTATCGA TCAAATCCAA
TGTGAATGCC CTTCCCAAGT TCTCTATTGA TGCCCAGAAG CTCCATGACG ACTTTGATAA GAAAGGGATG TCGTTGAAAG AAATGGTGGC ACTCTCCAGT GTCCACTCTC TTGGAATTTC
CCATTGCTCG TCATTCTCTG ACAGACTCTA CCACTTCAAC ACCACCCAAT CTCAGACTAT CTCAAGAGTC ATTATCTGTT TCCAAGAACC GAACGCAACG TCGTACCCCA TGATGTGGCT
ACTCCCAATC TCCTTGACGT CCAATATTAC AAAAACCTCA AGAAAGGAAA GGGACTGCTC ACCTTTGACC ATGCACTCTA GGCCAGCTCT CTCACTATGA ACATGGTGGA ATCCTTTGCC
AAGAAGCCCA ACCTTTGGAC CAAGAACTAC CCCAAAGCCA TGGTGAGGAT GGGCGCCATT GAAATCTTGA CTGGAAGCAA GTCTGAGATA AGGGTCAAAT GCTCTGTTGT GAATTGCAAC
TGA
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGCTTTGGT GCTCCTCGAG GGTGATGACT GTTGCGTTGG AGTTTCAATC CCTGAACACT GTTTCCTGCG CCGACGTCCT AGCCTTTGCC GCCCACCATG TTGTCGAGTT CACCGACGGC
TTCAGTTACA ATGTCCTAGC CGGGAGACAC GAAGGGAGGG TATCGATCAA ATCCAATGTG AATGCCCTTC CCAAGTTCTC TATTGATGCC CAGAAGCTCC ATGACGACTT TGATAAGAAA
GGGATGTCGT TGAAAGAAAT GGTGGCACTC TCCAGTGTCC ACTCTCTTGG AATTTCCCAT TGCTCGTCAT TCTCTGACAG ACTCTACCAC TTCAACACCA CCCAATCTCA GACTATCTCA
AGAGTCATTA TCTGTTTCCA AGAACCGAAC GCAACGTCCT CTCTCACTAT GAACATGGTG GAATCCTTTG CCAAGAAGCC CAACCTTTGG ACCAAGAACT ACCCCAAAGC CATGGTGAGG
ATGGGCGCCA TTGAAATCTT GACTGGAAGC AAGTCTGAGA TAAGGGTCAA ATGCTCTGTT GTGAATTGCA ACTGA
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Retrieve as FASTA
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