View Redoxidase 2502

Entry information : AtGPx06 (At4g11600 / PHGPx / GPX6 / AtGPx1 / LSC803 / ATGPX6)

Entry ID	2502
Creation	2006-06-14 (Marcia Pinheiro Margis)
Last sequence changes	2015-06-03 (Christophe Dunand)
Sequence status	complete
Reviewer	Achraf Jemmat
Last annotation changes	2015-11-12 (Achraf Jemmat)

Peroxidase information: AtGPx06 (At4g11600 / PHGPx / GPX6 / AtGPx1 / LSC803 / ATGPX6)

Name (synonym)

AtGPx06 (At4g11600 / PHGPx / GPX6 / AtGPx1 / LSC803 / ATGPX6)

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis thaliana [TaxId: 3702 ]

Cellular localisation

Mitochondria

Tissue types

Flowers
Leaves
Roots
Seedlings
Seeds
Siliques

Inducers

Germination
Salt stress

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AtGPx06 start..stop	S start..stop
AlyGPx06	461	3.76e-168	1..232	1..235
ThasGPx06-1	357	1.52e-126	1..232	1..242
ThasGPx06-2	348	2.35e-123	1..232	1..241
BnGPx06-2_other	339	1.31e-120	64..232	1..169

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	7011094..7011330	235	N° 2	7010876..7010952	75	N° 3	7010724..7010785	60	N° 4	7010511..7010629	117
N° 5	7010154..7010321	166	N° 6	7010021..7010056	34
complement(join(7010021..7010056,7010154..7010321,7010511..7010629,7010724..7010 785,7010876..7010952,7011094..7011330))

Literature and cross-references AtGPx06 (At4g11600 / PHGPx / GPX6 / AtGPx1 / LSC803 / ATGPX6)

Literature	Rodriguez Milla M.A., Maurer A., Rodriguez Huete A., Gustafson J.P. Glutathione peroxidase genes in Arabidopsis are ubiquitous and regulated by abiotic stresses through diverse signaling pathways. Plant J. 36:602-615(2003).
Protein ref.	UniProtKB: O48646
DNA ref.	Phytozome 12: Chr4 (7011330..7010021)
Cluster/Prediction ref.	Phytozome Gene 12: 19647168 UniGene: At.23184
Omic ref.	ePlant: At4g11600 TAIR: At4g11600

Protein sequence: AtGPx06 (At4g11600 / PHGPx / GPX6 / AtGPx1 / LSC803 / ATGPX6)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	232
PWM (Da):	25497.24
PI (pH):	9.86

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MLRSSIRLLYIRRTSPLLRSLSSSSSSSSSKRFDSAKPLFNSHRIISLPISTTGAKLSRSEHSMAASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYE
KYKGGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLLGVTA*

Retrieve as FASTA

Remarks

Complete sequence from genomic (5 introns), 7 cDNAs and 76 ESTs.

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

CATGACAGAG ACAGTTCTTT CTGATCCTTC AATGCCTCAG ATGCATATTT CTCAATATTG AAGCTCTTGG TCTCCTTCCT TTCTTCATGA GACTTTTTCC TTTGAATCTC GGGAGTGTTG ATTGATGTCT CACTGCCGTT GGTGGTAAGG AAAGTCTTAG TTTTATTTCC TTTGGATAGA TCTCTAGTCT TAGATCTGTT TTTAATTTAA CTTGGATTTA TACTTTGTAC TTTGTTTTTG AGTTCTTTTA GTAATGAGTT TGAGAAGTTT AGATTTAGTA TCAATGTTTT TCTTTATTTT TGAGTTTTTT TTTCATTTTC GATATGTTTT TATTCCCGAG AGATATTGTT TGCTCGCCGG CTTAATTTTG GGAAGGATTG TTTTCCTTGC CGACATATGT GTTAAAAATA AAATAAATAC AAAAATACCC TTTAAAAAAA ATTCCAGCAA TTTTATAAAA GTCTATCGTT TAATTACGGC AGATTTATTC TTATTCCGCA GACTTTTTTA ACTGCGACAG ATTTTCTATG GCAGACTCTT TTGGTTGACA GACTTTTTAG AAGATAGTGA TGACAGATTT ATAAATTATA GCTGATTTAA TTTGATTGAC AGATTTTTAT TTTATTCAAC CACAAACTTT TATATAATTT TATAGACTTA TTTTTTTGTC GTTGTATTTT CACGGTAAGT GATGGCAGAT TTATGATTTT GTTAAACAAA TCTGTCACAT TGTAACAGAT TTGTTGTCAA AAAATTAATT ACTAGAATGA CGTCTAACGA TAACCAATTT TTTTTAATGT TATGACAGAC TTGTTTTAAG TTATAACAGA TTTATGTAAT CTTACACAAT ATCTGTCGTT TGTTGGCAGA TTTATTTTCT AAAATATGAT GTTTTGTGTT ATGACAGAGT TGTTTTATGT TGTGACAGAT AAATTTATAT TACCATAAAT CTATCGTTTG ATGGCAGGTT TAATAAATAA GAAAATAAAT TGCTGAAATG ACCTTAAAAA TATTTTATGT TACGACAGAT TTGTAATTAG GAATTCTTAT GGTGACTGAT TTTTAGTTTT CTTGTTCCAT AATTTTTTGT AGTAGAATAA TACTAACTGT TGTGACAGTT TTTTTTTCAT TTTAGCTTGT TATGACTGAT TTACTAAAAT TAGTTACAAT ATTTAACTCA TAAAAAATAT TAATATCGAG ATACAACTAG GGTTTTGGTT ACAAAAACTT AGTCTCCTTA CAAAAAATAT GTGGCCTCCT TTCTTTCTTT TGTTTATCTT TTTTTTTCCT TTGGAAATCT CTTTTCAGTT TTTGGAGTAG TGGAAGCAAT ATATTGTTTC ATCTCTTTTC CTCGTATGTG TGTGGGTTAA AAAAATATGA AACCTATAAA CTCAGAATTT TGAGCGATAT TTTTTTAAAT TTTTCCTTAC TTATTTGTTT TTATTTTATT TTTAATTTCA TTTTACATTA TTTTTTTAAT ATCAGATGTT AAAAATTTCA AAAAAAATAC AGACCAAGGT TTTTTGGTCA TTATACACCA AAATTGTGTC AATCTAATTC TCTAATCAAA TAGAGAGTCA TTCTAGTTAT TATTGGCTAT ATTTGTGTCA ATCTAGGTAA TTTTGACAAA AAAAAAAAAG AAAAAAAAAA AAAGAGAACT CCAAATCCAG ATTGTGAAGC ATATTTCAAT TTCGCACTTA TTCGATCATA AAAGAATTTA CATAATTCGT TCATAAAATG TATGGGCTAA ATTTAGGCCC AGTATGAGAA AAAATCCAAA AGGCAGTAGT AACGTTCACA TTATGCCGCC ACAAAAAACG CAACTGATGA CGTAAGCACA CCGAGTGTTC CGACGATTCT CCAACGTGGC TTTCTCTTAA ACATCCACGT GTCTATTCCA TTCTCCAACC ACTGAACACG
GATCAAGAAA CTAAAATGAT ATTTTGACTC CAACCAAAAT AAATATCTAA TTTTGTGAGA AAAGAATCTT CTTTTGCAA

Retrieve as FASTA

Terminator +►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

GCAAGGCAAG ATTGCATAAT TAGACAAATA AAAGCTCATT AGTATTGTAT TACCAATACT GTGTAGTAAG CTGAGTTCGT GAGTGTGTGC CTTTGGGACC GCGTACAATT ATAATCCGTT TTTTAGCGGC CAAACTATGT AATAATCGTA GATCTAAATA TCAGATTTCC CGTTACCTTA CAATTTGGAT CAGTCTTTGT TACCAAAGCA TGAAACTGTG TCTCCTACAA CAACCGAACA GTCTCTACAT AATCCGGAAA AACCATTGCT TTTGTTTCCC GATGCTTGAA GTCATAGCCT CCGTGTACTT CAACCTTGGT TTTTCTTAAA CTTTTCGTGT CGGGATTGTA ATAGATAACA TAAAAGCTAT TAGAATAGAA CCGTGGTGCC AAAATAAACT CACCTGTATG AGTAGTGCCT GTGATAAATA AATCACAAAA TAACCACCTC CTAACACCTT TGATACTGAA ACTTTTCTTC AACCATCCAT GAATTTCGGC TTGCTGATCC AAAACCCACA CTTCAATACC AATAAATAAA GTTTTAGTGG CTAAGGCTAC TTTCCCCTTG TACCTCATCA AAGTGAAACC ATGTAGAAAT GCAGCTGGAA AGTCCGCGGG TAAACTAGTA AAAAGATCCA ACTTTTCAGA CCCCAAATCG AATCTCATTA AGCTCAGCTG TGACAAATCT TCGCCCGTAA AAGCAACATA ATATAAAACA CCATCTATGC ACACACTGTT CAGCACAGGA CCGTGAGGAG TTGTATAATC AATCATTCTC CATGGTTTCT TTTTAACTCC CAATGGGAAT ACTTGATGTT GAGATGATAG TTGTAATATT CGAGTTCGAC CGTCATGACG TTGCATTTTT TCCTTCATGC ACAATACCAA TAGTTTGTAT TCATCATTAA CCGGATCATA CCCCAAAAAA CATTGCGCAA CCTTACTATT GGTTTGGACT
CTCCCTAAAA CTGTGGATTT ACCGGTGCTA GGGTTAGTTA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCTTCGCTCCTCAATTCGACTTCTCTATATAAGAAGAACCAGTCCTCTGCTTCGAAGTTTATCATCATCATCATCATCATCATCATCAAAACGATTCGATTCTGCGAAACCACTTTTC
AATTCTCATCGGATTATTTCTCTTCCAATTTCTACAACGGGAGCTAAACTATCTAGATCGGAGCATTCAATGGCTGCTTCTTCCGAACCCAAATCTCTTTACGATTTCACCGTCAAGGTT
CGATTCAAATGATCCTTTTCTTTGATTCTCTTGCGATTTGATTACGTTTGATTCTCTGAGTTTAATCTTTGACTATTTCGGAAATTTGAATTTGTTGATCGGATTTGGGATTTGGTATTG
ATTGATTTATTGGATCAGGAGATGCTAAGGGAAACGATGTTGATCTAAGCATCTACAAAGGGAAGGTTCTTTTGATTGTGAACGTTGCTTCTCAATGGTAAGATTTCGATTTTGTAACGT
TTAGATGTGATCATAGATTCATTGGTTTTAGTGACTTAGTTTCTTTGGTGATTTGATTCTTCTGCAGTGTGGCTTGACTAATTCGAATTATACTGAGCTTGCGCAGCTGTATGAGAAGTA
CAAAGGCCATGGTATATAATTTTGTTACTAGTTGTTTCATGTTTGTTTGTGATCATGGTTTATCATCGTGTTTGTTATTGTTGATGGTTGCAATTTTTGATTTAGGTGTTTCGAGATTCT
TGCGTTTCCGTGTAACCAGTTTGGGAATCAAGAGCCTGGTACTAATGAAGAGATTGTTCAGTTTGCTTGTACTCGTTTCAAGGCTGAGTACCCGATTTTCGACAAGGTAACAACTTTTCT
TGACACACGAGACGAAGATATGTGAGAATGTTGCTAGCTCTTAGAGCATCACTGAATAATTTTTGGAATTGGATGATGTAGTCTGAGTATCAGTGACTCATTTTCAGATAATGTTTCGTT
TTGAGTATAAGTTCTCTACTTGGAGTTGATTCTACCTTTGCACTATGTAATGCAGGTGTTGATGTTAACGGTGACAAAGCTGCCCCAGTCTACAAGTTTCTGAAATCAAGCAAAGGCGGG
CTCTTTGGAGACGGCATTAAGTGGAACTTCGCAAAGTTCTTGGTTGACAAAGATGGAAATGTTGTCGATCGTTTCGCACCAACTACCTCACCTCTCAGCATTGAGGTAATGTCTCTATCA
CATGTAATCATCAAAAGCTTGAGTTTTGTTTAGAGCCACAAAGTTTCTAATTGCTTGTCAAATCGTTGTTTCGCAATTGCAGAAAAGGATGTGAAGAAGTTGTTGGGAGTTACTGCTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CAAAATAAAT ATCTAATTTT GTGAGAAAAG AATCTTCTTT TGCAAATGCT TCGCTCCTCA ATTCGACTTC TCTATATAAG AAGAACCAGT CCTCTGCTTC GAAGTTTATC ATCATCATCA TCATCATCAT CATCAAAACG ATTCGATTCT GCGAAACCAC TTTTCAATTC TCATCGGATT ATTTCTCTTC CAATTTCTAC AACGGGAGCT AAACTATCTA GATCGGAGCA TTCAATGGCT GCTTCTTCCG AACCCAAATC TCTTTACGAT TTCACCGTCA AGGATGCTAA GGGAAACGAT GTTGATCTAA GCATCTACAA AGGGAAGGTT CTTTTGATTG TGAACGTTGC TTCTCAATGT GGCTTGACTA ATTCGAATTA TACTGAGCTT GCGCAGCTGT ATGAGAAGTA CAAAGGCCAT GGTTTCGAGA TTCTTGCGTT TCCGTGTAAC CAGTTTGGGA ATCAAGAGCC TGGTACTAAT GAAGAGATTG TTCAGTTTGC TTGTACTCGT TTCAAGGCTG AGTACCCGAT TTTCGACAAG GTTGATGTTA ACGGTGACAA AGCTGCCCCA GTCTACAAGT TTCTGAAATC AAGCAAAGGC GGGCTCTTTG GAGACGGCAT TAAGTGGAAC TTCGCAAAGT TCTTGGTTGA CAAAGATGGA AATGTTGTCG ATCGTTTCGC ACCAACTACC TCACCTCTCA GCATTGAGAA GGATGTGAAG AAGTTGTTGG GAGTTACTGC TTAAGCAAGG CAAGATTGCA TAATTAGACA AATAAAAGCT CATTAGTATT GTATTACCAA TACTGTGTAG TAAGCTGAGT TCGTGAGTGT GTGCCTTTGG GACCGCGTAC AATTATAATC CGTTTTTTAG CGGCCAAACT ATGTAATAAT CGTAGATCTA AATATCAGAT TTCCCGTTAC CTTACAATTT GGATCAGTCT TTGTTACCAA AGCATGAAAC
TGTGTCTCCT ACAACAACCG AACAGTCTCT ACATAA

Retrieve as FASTA