View Redoxidase 3042

Entry information : BrPrx50-1Aa_other (Bra011771)

Entry ID	3042
Creation	2009-08-07 (Christophe Dunand)
Last sequence changes	2009-08-07 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2012-07-24 (Christophe Dunand)

Peroxidase information: BrPrx50-1Aa_other (Bra011771)

Name (synonym)

BrPrx50-1Aa_other (Bra011771)

Class

Class III peroxidase [Orthogroup: Prx009]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica

Organism

Brassica rapa [TaxId: 3711 ]

Cellular localisation

N/D

Tissue type

Roots

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BrPrx50-1Aa_other start..stop	S start..stop
BnPrx50-1_other	668	0	1..326	1..326
BoPrx50_other	661	0	1..326	1..326
TsPrx51	602	0	20..326	22..328
ThPrx51	602	0	20..326	22..328

Literature and cross-references BrPrx50-1Aa_other (Bra011771)

Literature	Ryu,S.H., Kang,J.S., Yang,K.A. and Lim,C.O. Expressed Sequence Tags of Chinese cabbage Roots, Unpublished (2004)
DNA ref.	GenBank: AC189204.2 (99661..100992)
EST ref.	GenBank: EX134786.1 [5' end] EX131445.1 [3' end]
Cluster/Prediction ref.	UniGene: Bra.5155

Protein sequence: BrPrx50-1Aa_other (Bra011771)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	326 (304)
PWM (Da):	35588.22 (33215.8)
PI (pH):	9.25 (9.07)	Peptide Signal:	cut: 23 range:23-326

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MAAKNLLLLF ISLFLTVNLV SAQLRSNFYA GSCPNVEKIV RDAVQKKVQQ TFTTIPATLR LYFHDCFVNG CDASVMIAST GNNKAEKDHP DNLSLAGDGF DTVIKAKQAL DAVANCRNKV SCADILTIAT RDVVNLAGGP RYEVELGRLD GLSSTAASVE GKLPQPTDDV NKLTSLFAKN GLSLNEMIAL SGAHTLGFAH CTKVFNRIYS FNKTTQVDPT VNKAYVTELR ASCPRNIDPR
VAINMDPTTP RQFDNVYYKN LQQGKGLFTS DQDLFTDRRS KPTVDLWANN ANLFNQAFVN SMIKLGRVGV KTGRNGNIRR DCGAFN

Retrieve as FASTA

Remarks

Complete sequence from genomic (3 introns) and 13 ESTs.