View Redoxidase 3095

Entry information : PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)

Entry ID	3095
Creation	2006-05-31 (Claudia Cosio)
Last sequence changes	2010-07-12 (Christophe Dunand)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2019-07-04 (Christophe Dunand)

Peroxidase information: PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)

Name

PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)

Class

Class III peroxidase [Orthogroup: Prx002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Salicaceae Populus

Organism

Populus trichocarpa (Western balsam poplar) [TaxId: 3694 ]

Cellular localisation

N/D

Tissue types

Leaves
Stems

Inducers

Insect damage (Spodoptera exigua, Meloidogyne, Aphib)
Pathogen interaction

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PtPrx18 start..stop	S start..stop
MePrx33	550	0	6..318	7..319
RcPrx41	538	0	21..318	23..320
CclPrx36	506	0	2..318	4..327
GhPrx27	502	0	2..318	11..326

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3095' 'join(32933290..32934246)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	32933290..32934246	955
join(32933290..32934246)

Literature and cross-references PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)

Literature	Ralph,S., et al., Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences. Mol. Ecol. 15 (5), 1275-1297 (2006).
DNA ref.	Phytozome 12: scaffold_1 (32933290..32934246)
Omic ref.	ePlant: Potri.001G351000

Protein sequence: PtPrx18(Potri.001G351000.1 [3.0] /POPTR_0001s34660 / PT01G19510)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	318 (296)
PWM (Da):	35622.87 (33038.5)
PI (pH):	8.67 (8.52)	Peptide Signal:	cut: 23 range:23-318

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MPKERFFLIL ISFSSLIYPS QSRLSYNYYS KSCPNFNKII QETVTSKQIT SPSTAAGTLR LFFHDCLPNG CDASILISST PFNSAERDAD INLSLPGDAF DLVTRAKTAL ELSCPNTVSC ADILTIATRD LVTMVGGPYY NVLLGRKDYR ISKSSYVEGN LPRPTMPMSK IISLFAVKGF SVQEMVALSG AHTIGFSHCK EFKSYLYNDT HYNQRFVQAL RNACADYPKN PTLSVFNDIM
TPNNFDNKYF DNLGKGLGLL ESDHGLYNNP MTNPFVEIYA KDEKKFFQDF ARAMEKLSVY GIKTGRRGEI RRRCDAIN

Retrieve as FASTA

Remarks

Complete sequence from genomic (no introns) and 4 ESTs (DT497261, CV249987, CV251323, DT498876).

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGCCAAAGG AGCGATTTTT CCTTATTCTC ATTTCCTTCT CTTCTCTCAT ATACCCCTCC CAGTCCAGAC TCTCCTACAA CTACTACTCC AAATCCTGTC CAAACTTCAA CAAAATCATT CAAGAAACAG TAACCAGCAA GCAGATCACC AGCCCCAGCA CCGCAGCTGG CACTCTCCGC CTCTTCTTCC ATGACTGCTT ACCCAATGGC TGCGATGCCT CCATCCTCAT CTCCTCCACC CCTTTCAACT CCGCCGAGCG TGATGCTGAC ATCAACCTTT CCTTACCCGG CGACGCCTTC GACCTTGTCA CTCGCGCCAA GACCGCCCTC GAGCTCTCCT GCCCCAACAC CGTCTCCTGC GCCGACATCC TCACCATCGC CACCCGTGAT CTCGTAACCA TGGTCGGTGG CCCTTACTAC AATGTCCTCC TCGGGCGCAA AGATTACCGC ATCAGTAAAT CTTCTTATGT TGAAGGAAAT CTGCCAAGAC CCACCATGCC TATGTCTAAA ATTATCAGCT TGTTTGCTGT TAAAGGTTTC AGTGTCCAAG AAATGGTGGC ACTGAGCGGT GCTCATACAA TTGGTTTCTC TCATTGCAAG GAGTTCAAGA GTTATTTGTA TAACGACACG CATTATAATC AGAGATTTGT TCAGGCGTTG CGAAATGCTT GTGCGGATTA TCCAAAGAAC CCAACTCTGT CGGTGTTCAA TGATATAATG ACACCAAATA ACTTTGATAA TAAGTATTTT GATAATTTGG GTAAAGGGTT GGGGCTATTA GAGTCAGATC ATGGGTTATA TAACAACCCA ATGACAAATC CTTTTGTGGA GATTTATGCC
AAGGATGAGA AGAAATTCTT TCAGGATTTT GCAAGAGCCA TGGAGAAGCT AAGTGTTTAT GGGATCAAGA CTGGGAGGAG AGGCGAGATT AGGCGCAGGT GTGATGCCAT TAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA