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Entry information : PtPrx19 (POPTR_0001s18270 / PT01G12790 / Potri.001G182400)
Entry ID 3097
Creation 2010-04-13 (Christophe Dunand)
Last sequence changes 2010-06-22 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2014-01-29 (Qiang Li)
Peroxidase information: PtPrx19 (POPTR_0001s18270 / PT01G12790 / Potri.001G182400)
Name (synonym) PtPrx19 (POPTR_0001s18270 / PT01G12790 / Potri.001G182400)
Class Class III peroxidase    [Orthogroup: Prx022]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx19
start..stop		 S start..stop
PtPrx61 555 0 1..317 1..315
CsPrx02 479 1.5e-171 4..317 64..379
MePrx84 464 5.2e-165 1..317 62..421
VvPrx95 445 4.38e-158 13..316 64..367
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 15335286..15335468 181 N° 2 15335768..15335956 187 N° 3 15336031..15336196 164 N° 4 15336741..15336889 147
N° 5 15337268..15337534 265  
join(15335286..15335468,15335768..15335956,15336031..15336196,15336741..15336889 ,15337268..15337534)


exon

Literature and cross-references PtPrx19 (POPTR_0001s18270 / PT01G12790 / Potri.001G182400)
DNA ref. Phytozome 12:   scaffold_1 (15335286..15337534)
Omic ref. ePlant:   Potri.001G182400
Protein sequence: PtPrx19 (POPTR_0001s18270 / PT01G12790 / Potri.001G182400)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   317 (309)
PWM (Da):   %s   34882.21 (33322.3) Transmb domain:   %s   i5-27o
PI (pH):   %s   5.07 (4.50) Peptide Signal:   %s   cut: 31 range:31-339
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEDDDGEVSWHSNRSLEYDFYRDSCPEAERIIRRVVHELYEVNSS
VAPALLRLVFHDCFIEGCDASILLDAATGIDSEKDSPPNKNLKGFDIIDKIKSEIEMVCPGVVSCADIVALAGREGVVQAGGPFYPLYTGRRDAMHSFRDVATSELPSPNADLSETLASFASRGFDLRETVSLLGG
HSIGVIHCKFFQNRLYNFGRTNKPDPSLDTGFLNLLRSRCNDSNSSMEPGMNMAYEGPGVDFGTLYYRSLLQGKGILYSDQQLMAGIDTGIWVRAYASDISLFPRDFALAMMKLSNLRVL
TGSKGQVRLHCSKVA*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 3 introns + 3'). No EST. Containing IntR (3').
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGACGATGATGGAGAAGTATCATGGCATTCAAACCGGTCTCTTGAGTATGATTTCTATCGTGATTCGTGCCCAGAGGCAGAAAGAATCATTCGCAGGGTGGTTCACGAGCTATAT
GAAGTCAACTCCAGTGTAGCTCCTGCTCTTCTAAGGCTCGTGTTTCATGATTGTTTTATTGAGAGGTAGATGATTTCAATCTTTCTTTTTGTTGATTCCTAGGGGGTTAGTCACTGCTTA
ATTATTCATCATTTAGTACGACGAAGGTTTTAATTTTTCAGCTTTGGTTGGCAATTCTTTCATGGTATCTTTTGCTTACAAATCTTGATCGAAGACTATTTTGATGTTAAGTTCTTTCTT
GTGGATTTTTGTTTCGGAAGCTTTCAGATTGGAAGTGATTCTGTTTAAGTAAAATTTCGTCTATGTTTCAGTTATCTTCGTTTTTATTACAAGTAGACCTGAGTTCTTTTGTGAATCTTT
TCAGGGGTGTGATGCATCTATTTTGTTGGATGCTGCTACAGGCATTGATTCCGAGAAAGACTCTCCTCCCAATAAAAACTTGAAGGGATTTGATATAATTGACAAAATCAAATCAGAGAT
TGAAATGGTGTGCCCAGGAGTTGTTTCTTGTGCTGATATCGTTGCTTTAGCAGGCAGAGAAGGTGTTGTTCAGAGGTATAAACATCATTCTGTTTCCTATTTCTCCTTCACTGCTTTCAT
AATCTTACTATTGAATTTTTGAATTTCAGGCTGGTGGTCCATTCTATCCACTGTATACTGGCAGGAGGGATGCTATGCATTCTTTCCGAGATGTGGCAACGTCTGAGCTTCCTTCACCCA
ATGCTGATCTATCTGAAACCCTAGCATCTTTCGCATCTAGGGGTTTTGATTTAAGAGAAACTGTCAGTCTCCTGGGGGTACTAATCTTTCCTTACCATACAAAGGAACACAGAAATCTTT
TTATAAATCTCTGTTCCTATATTGCTCTTATCAGAATCTATGCTTTCCTCTTCTCTCCTGCTATCAGCTGATGTTTTTCTTATTTCTATGCTTTAATTTTAACATCTGTGAATAAAATGA
CATTAATTCAACTGATGCTTCTGCAAAAGCAGGGCTCAGTTGAGGTGATTTTTCATGCTTTAGTAGAAAACTGGAAGAAAGGCTAGGGCTAAACATTTCAGAAGTATAACTGTGCTGTTC
CATCAATCTTCCCTATTTATTGGAATGCTTTTTTTGAAATTAATACATGCGAAATCAAAGCCTCCCTCTAAGAACTGGTTGTGGTTTGTGTTTCTATGAATAGCTTTCCGCCTACTTTTC
TGCTGGTGGTGCCGGTAATTTATCATCTCCAACTTCTGCTCCTTGAATAGTTTGGTTATTTCTCACTCTCGCATTCTTGCTGCAAAAATACAACAGCTTAAGATTTGAATGCTTCTAACT
GCAACATTGCCCTGCTTGTAGGTGGTCACAGCATAGGAGTAATCCACTGCAAATTCTTCCAAAACCGTCTCTACAACTTCGGTAGGACTAATAAGCCCGATCCTTCTCTGGATACAGGGT
TTCTTAACCTACTGAGATCTAGATGCAATGACAGTAACTCATCGATGGCACAGCATCGCCTTCGCCTTCGCCTTCCTTTAAAGCCACACCACCAGCACCGTCGACTTCCTGTGATGGCAC
CAACTCACCAGCACCGTCGACTTCCTGCGATGGCACCAAGTCACCAGCACCGTCGACTTCCTTTGATGGCACCAAGTCACCAGCACCAGCACCGTCGACTTCCTTTGATGGCACCATGTC
ACCATCAACAGCACCTTCGCTTTCCTGTAGTGGATCACCATCTTCATCGTCCAGGGCAGCAGAAATGAGGGGCTCCCCATCATTATTGTCAGCACCATCACCTTCCTTGAAAGGTTCAAT
TTCTTCCCCACCGTCATCATCAACACCTTCATCAGCTTCCTTCGAAGATTCACTGCTTTCCTCACTGGAGGAGCCAGGAATGAATATGGCCTATGAGGGCCCAGGAGTAGATTTTGGCAC
GTTGTACTACCGCAGTCTTTTGCAAGGTAAAGGAATCCTTTATTCCGATCAGCAGCTAATGGCTGGGATAGATACTGGTATTTGGGTACGAGCATATGCTTCAGACATCTCCTTGTTCCC
ACGAGACTTTGCCCTAGCAATGATGAAGCTCTCGAATCTCAGAGTCTTGACAGGATCAAAAGGCCAGGTCCGGCTCCATTGTTCAAAGGTGGCATGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGACGATGATGGAGAAGTATCATGGCATTCAAACCGGTCTCTTGAGTATGATTTCTATCGTGATTCGTGCCCAGAGGCAGAAAGAATCATTCGCAGGGTGGTTCACGAGCTATAT
GAAGTCAACTCCAGTGTAGCTCCTGCTCTTCTAAGGCTCGTGTTTCATGATTGTTTTATTGAGGGGTGTGATGCATCTATTTTGTTGGATGCTGCTACAGGCATTGATTCCGAGAAAGAC
TCTCCTCCCAATAAAAACTTGAAGGGATTTGATATAATTGACAAAATCAAATCAGAGATTGAAATGGTGTGCCCAGGAGTTGTTTCTTGTGCTGATATCGTTGCTTTAGCAGGCAGAGAA
GGTGTTGTTCAGGCTGGTGGTCCATTCTATCCACTGTATACTGGCAGGAGGGATGCTATGCATTCTTTCCGAGATGTGGCAACGTCTGAGCTTCCTTCACCCAATGCTGATCTATCTGAA
ACCCTAGCATCTTTCGCATCTAGGGGTTTTGATTTAAGAGAAACTGTCAGTCTCCTGGGTGGTCACAGCATAGGAGTAATCCACTGCAAATTCTTCCAAAACCGTCTCTACAACTTCGGT
AGGACTAATAAGCCCGATCCTTCTCTGGATACAGGGTTTCTTAACCTACTGAGATCTAGATGCAATGACAGTAACTCATCGATGGCAGAGCCAGGAATGAATATGGCCTATGAGGGCCCA
GGAGTAGATTTTGGCACGTTGTACTACCGCAGTCTTTTGCAAGGTAAAGGAATCCTTTATTCCGATCAGCAGCTAATGGCTGGGATAGATACTGGTATTTGGGTACGAGCATATGCTTCA
GACATCTCCTTGTTCCCACGAGACTTTGCCCTAGCAATGATGAAGCTCTCGAATCTCAGAGTCTTGACAGGATCAAAAGGCCAGGTCCGGCTCCATTGTTCAAAGGTGGCATGA

Retrieve as FASTA