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Entry information : PtPrx23 (POPTR_0001s46310 / Potri.001G458900)
Entry ID 3100
Creation 2008-08-14 (Christophe Dunand)
Last sequence changes 2010-06-18 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx23 (POPTR_0001s46310 / Potri.001G458900)
Name (synonym) PtPrx23 (POPTR_0001s46310 / Potri.001G458900)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx23
start..stop		 S start..stop
PtPrx24 642 0 1..322 1..322
RcPrx77 497 3.73e-179 1..322 1..323
NnPrx51 495 1.8e-178 3..322 7..325
MePrx109 492 3.5e-177 1..322 1..321
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 49248574..49248789 214 N° 2 49248865..49249056 190 N° 3 49249140..49249305 164 N° 4 49249426..49249820 393
join(49248574..49248789,49248865..49249056,49249140..49249305,49249426..49249820 )


exon

Literature and cross-references PtPrx23 (POPTR_0001s46310 / Potri.001G458900)
Literature DOE joint genome institute.
DNA ref. Phytozome 12:   Chr01 (49248574..49249820)
Cluster/Prediction ref. JGI gene:   593058
Omic ref. ePlant:   Potri.001G458900
Protein sequence: PtPrx23 (POPTR_0001s46310 / Potri.001G458900)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   322 (297)
PWM (Da):   %s   34597.02 (31928.7) Transmb domain:   %s   i7-29o
PI (pH):   %s   7.18 (6.74) Peptide Signal:   %s   cut: 26 range:26-322
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVSRLSLACVVFSLFLISSCLPCQAQLSSNFYDSTCPNALTTIRT
AIRRAVSSERRMAASLIRLHFHDCFVQGCDASIMLDNSPSIDSEKFSFSNNNSIRGFEVIDDAKAQVESICPGVVSCADIAAVAARDASVAVGGPSWTVRLGRRDSTTASRSLADSDIPRATTSLVNLIGMFNGKGLSERDMVALSG
SHTIGQARCVTFRGRIYDNSSDIDAGFASTRRRNCPSASGNGNNNLAPLDLVTPNSFDNNYFRNLIQRRGLLQSDQELFSGQSTDSIVTEYSRNASLFSSDFAAAMLRMGDIEPLTGSQG
EIRRVCSVVN

Retrieve as FASTA  
Remarks Complete sequence from genomic DNA (chromo 1, 3 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTCTCGTTTATCTTTAGCTTGTGTTGTTTTTTCATTATTCTTGATTTCCTCATGCTTGCCATGCCAAGCACAACTGTCTTCAAACTTCTATGACAGCACATGTCCGAATGCACTG
ACCACAATTCGTACTGCTATTCGGAGAGCTGTCTCGAGTGAGCGCAGAATGGCAGCATCCCTTATTCGTCTTCACTTCCATGATTGCTTTGTTCAAAAGTAAATTACTCGATCGCTACAA
CATTAGTACTGATTTCAGTCTGGAACTGATATATATGTTTGCTTATATTGCAGGGTTGTGATGCTTCAATCATGCTTGACAATTCTCCTTCAATAGATAGCGAGAAATTCTCATTCAGCA
ATAACAATTCAATCCGGGGATTTGAAGTCATTGATGATGCCAAGGCTCAAGTGGAGAGCATATGTCCTGGAGTTGTTTCATGTGCTGACATTGCTGCTGTAGCAGCCCGTGATGCATCTG
TTGCTCTGTGAGTAACATTCCCTGCTTGGAAAGCTTCTCATTCAAACGTGATCAATCTAGTTATAAGTTCGGTTTCTATCTATAATACAGGTTGGTGGACCATCATGGACAGTGAGGCTT
GGAAGAAGGGACTCCACCACAGCAAGCCGAAGCCTAGCTGACAGCGATATTCCTAGAGCTACAACTAGCCTTGTAAACCTAATTGGCATGTTCAATGGAAAAGGTTTGAGTGAAAGAGAT
ATGGTTGCCCTTTCAGAGGTGTGTGCCTAAATAAGAACATGAACAGTTCCAACAATTTTCTAGGGCTAATTAAACATATATCTAAACCCACGAATGTATTGCTGTCAAAGTTTGACTAAA
GATTTCATTTTGATACAGGATCACATACAATAGGCCAAGCAAGATGTGTGACCTTCCGAGGCAGAATATATGACAATTCAAGTGATATTGATGCTGGTTTCGCCAGCACCAGAAGACGCA
ATTGTCCATCTGCTTCCGGTAACGGAAATAATAATCTTGCTCCACTTGATTTGGTGACACCCAATTCTTTCGATAACAATTACTTCAGGAATCTCATTCAAAGGAGGGGACTTCTTCAAT
CAGACCAAGAGCTCTTTAGTGGTCAATCTACAGACAGCATAGTCACCGAGTACAGCAGGAACGCTTCACTTTTTAGTTCTGATTTTGCCGCTGCCATGTTAAGGATGGGAGATATAGAAC
CACTGACTGGTTCTCAAGGAGAGATACGAAGGGTTTGCAGTGTTGTTAATTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTCTCGTTTATCTTTAGCTTGTGTTGTTTTTTCATTATTCTTGATTTCCTCATGCTTGCCATGCCAAGCACAACTGTCTTCAAACTTCTATGACAGCACATGTCCGAATGCACTG
ACCACAATTCGTACTGCTATTCGGAGAGCTGTCTCGAGTGAGCGCAGAATGGCAGCATCCCTTATTCGTCTTCACTTCCATGATTGCTTTGTTCAAGGTTGTGATGCTTCAATCATGCTT
GACAATTCTCCTTCAATAGATAGCGAGAAATTCTCATTCAGCAATAACAATTCAATCCGGGGATTTGAAGTCATTGATGATGCCAAGGCTCAAGTGGAGAGCATATGTCCTGGAGTTGTT
TCATGTGCTGACATTGCTGCTGTAGCAGCCCGTGATGCATCTGTTGCTGTTGGTGGACCATCATGGACAGTGAGGCTTGGAAGAAGGGACTCCACCACAGCAAGCCGAAGCCTAGCTGAC
AGCGATATTCCTAGAGCTACAACTAGCCTTGTAAACCTAATTGGCATGTTCAATGGAAAAGGTTTGAGTGAAAGAGATATGGTTGCCCTTTCAGGATCACATACAATAGGCCAAGCAAGA
TGTGTGACCTTCCGAGGCAGAATATATGACAATTCAAGTGATATTGATGCTGGTTTCGCCAGCACCAGAAGACGCAATTGTCCATCTGCTTCCGGTAACGGAAATAATAATCTTGCTCCA
CTTGATTTGGTGACACCCAATTCTTTCGATAACAATTACTTCAGGAATCTCATTCAAAGGAGGGGACTTCTTCAATCAGACCAAGAGCTCTTTAGTGGTCAATCTACAGACAGCATAGTC
ACCGAGTACAGCAGGAACGCTTCACTTTTTAGTTCTGATTTTGCCGCTGCCATGTTAAGGATGGGAGATATAGAACCACTGACTGGTTCTCAAGGAGAGATACGAAGGGTTTGCAGTGTT
GTTAATTGA

Retrieve as FASTA