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Entry information : PtPrx24 (POPTR_0001s46290 / Potri.001G458700)
Entry ID 7448
Creation 2010-08-02 (Christophe Dunand)
Last sequence changes 2010-08-02 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx24 (POPTR_0001s46290 / Potri.001G458700)
Name (synonym) PtPrx24 (POPTR_0001s46290 / Potri.001G458700)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx24
start..stop		 S start..stop
PtPrx23 642 0 1..322 1..322
RcPrx77 501 0 1..322 1..323
NnPrx51 499 3.25e-180 3..322 7..325
MePrx109 495 1.35e-178 1..322 1..321
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7448' 'join(49220281..49220496,49220572..49220763,49220849..49221014,49221131..49221525)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 49220281..49220496 214 N° 2 49220572..49220763 190 N° 3 49220849..49221014 164 N° 4 49221131..49221525 393
join(49220281..49220496,49220572..49220763,49220849..49221014,49221131..49221525 )


exon

Literature and cross-references PtPrx24 (POPTR_0001s46290 / Potri.001G458700)
DNA ref. Phytozome 12:   Chr01 (49220281..49221525)
Omic ref. ePlant:   Potri.001G458700
Protein sequence: PtPrx24 (POPTR_0001s46290 / Potri.001G458700)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   322 (297)
PWM (Da):   %s   34613.03 (31910.7)  
PI (pH):   %s   7.57 (7.25) Peptide Signal:   %s   cut: 26 range:26-322
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVSRLSLACVVFSLFLISSCFPCQAQLSSNFYDSTCPNALTTIRT
AIRRAVSSERRMAASLIRLHFHDCFVQGCDASIMLDNSPSIDSEKFSFSNNNSIRGFEVVDDAKAQVESICPGVVSCADIAAVAARDASVAVGGPSWTVRLGRRDSTTASRSLADSDIPRATTSLVNLIGMFNGKGLSERDMVALSG
SHTIGQARCVTFRGRIYDNSSDIDAGFASTRRRNCPSASGNGNNNLAPLDLVTPNSFDNNYFRNLIQRRGLLQSDQVLFSGQSTDSIVTEYSRNPSLFSSDFAAAMLRMGDIEPLTGSQG
EIRRVCSVVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 3 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTCTCGTTTATCTTTAGCTTGTGTTGTTTTTTCATTATTCTTGATTTCCTCATGTTTTCCATGCCAAGCACAACTGTCTTCAAACTTCTATGACAGCACATGTCCGAATGCACTG
ACCACAATTCGTACTGCTATTCGGAGAGCTGTCTCGAGCGAGCGCAGAATGGCAGCATCCCTTATTCGTCTTCACTTCCATGATTGCTTTGTTCAAAAGTAAATTACTCGATCGCTACAA
CATTAGTACTGATTTCAGTCTGGAACTGATATATATGTTTGCTTATATTGCAGGGTTGTGATGCTTCAATCATGCTTGACAATTCTCCTTCAATAGATAGCGAGAAATTCTCATTCAGCA
ATAACAATTCAATCCGGGGATTTGAAGTCGTTGATGATGCCAAGGCTCAAGTGGAGAGCATATGTCCTGGAGTTGTTTCATGTGCTGACATTGCTGCTGTAGCAGCCCGTGATGCATCTG
TTGCTCTGTGAGTAACACATTCCCTGCTCGGAAAGCTTCTCATTCAAACGTGATCAATCTAGTTATAAGTTCGGTTTCTATCTATAATACAGGTTGGTGGACCATCATGGACAGTGAGGC
TTGGAAGAAGGGACTCCACCACAGCAAGCCGAAGCCTAGCTGACAGCGATATTCCTAGAGCTACAACTAGCCTTGTAAACCTAATTGGCATGTTCAATGGAAAAGGTTTGAGTGAAAGAG
ATATGGTTGCCCTTTCAGAGGTGTGTGCCTAAATAAGAACATGAACAGTTCCAACAATTTTCTAGGGCTAAACATCTATCTAAACGCACGAATGTATTACCGTCAAGGTTTGACTAAAGA
TTTCATTTTGATACAGGATCACATACAATAGGCCAAGCAAGATGTGTGACCTTCCGAGGCAGAATATATGACAATTCAAGTGATATTGATGCTGGTTTCGCCAGCACCAGAAGACGCAAT
TGTCCATCTGCTTCCGGTAACGGAAATAATAATCTTGCTCCACTTGATTTGGTGACACCCAATTCTTTCGATAACAATTACTTCAGGAATCTCATTCAAAGGAGGGGGCTTCTTCAATCA
GACCAAGTGCTCTTTAGTGGTCAATCTACAGACAGCATAGTCACCGAGTACAGCAGGAACCCTTCACTTTTTAGTTCTGATTTTGCCGCTGCCATGTTAAGGATGGGAGATATAGAACCA
CTGACTGGTTCTCAAGGAGAGATACGAAGGGTTTGCAGTGTTGTTAATTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTTTCTCGTTTATCTTTAGCTTGTGTTGTTTTTTCATTATTCTTGATTTCCTCATGTTTTCCATGCCAAGCACAACTGTCTTCAAACTTCTATGACAGCACATGTCCGAATGCACTG
ACCACAATTCGTACTGCTATTCGGAGAGCTGTCTCGAGCGAGCGCAGAATGGCAGCATCCCTTATTCGTCTTCACTTCCATGATTGCTTTGTTCAAGGTTGTGATGCTTCAATCATGCTT
GACAATTCTCCTTCAATAGATAGCGAGAAATTCTCATTCAGCAATAACAATTCAATCCGGGGATTTGAAGTCGTTGATGATGCCAAGGCTCAAGTGGAGAGCATATGTCCTGGAGTTGTT
TCATGTGCTGACATTGCTGCTGTAGCAGCCCGTGATGCATCTGTTGCTGTTGGTGGACCATCATGGACAGTGAGGCTTGGAAGAAGGGACTCCACCACAGCAAGCCGAAGCCTAGCTGAC
AGCGATATTCCTAGAGCTACAACTAGCCTTGTAAACCTAATTGGCATGTTCAATGGAAAAGGTTTGAGTGAAAGAGATATGGTTGCCCTTTCAGGATCACATACAATAGGCCAAGCAAGA
TGTGTGACCTTCCGAGGCAGAATATATGACAATTCAAGTGATATTGATGCTGGTTTCGCCAGCACCAGAAGACGCAATTGTCCATCTGCTTCCGGTAACGGAAATAATAATCTTGCTCCA
CTTGATTTGGTGACACCCAATTCTTTCGATAACAATTACTTCAGGAATCTCATTCAAAGGAGGGGGCTTCTTCAATCAGACCAAGTGCTCTTTAGTGGTCAATCTACAGACAGCATAGTC
ACCGAGTACAGCAGGAACCCTTCACTTTTTAGTTCTGATTTTGCCGCTGCCATGTTAAGGATGGGAGATATAGAACCACTGACTGGTTCTCAAGGAGAGATACGAAGGGTTTGCAGTGTT
GTTAATTGA

Retrieve as FASTA