1. Browse the Database
  2. View Redoxidase
Entry information : BoPrx72-1Ca_other
Entry ID 3196
Creation 2006-09-01 (Christophe Dunand)
Last sequence changes 2006-09-01 (Christophe Dunand)
Sequence status partial
Reviewer Filippo Passardi
Last annotation changes 2012-05-10 (Christophe Dunand)
Peroxidase information: BoPrx72-1Ca_other
Name BoPrx72-1Ca_other
Class Class III peroxidase     [Orthogroup: Prx004]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BoPrx72-1Ca_other
start..stop		 S start..stop
BrPrx72-1Aa_other 520 0 1..260 80..337
BrPrx72-1Ab_other 508 0 1..258 79..334
AhalPrx01 508 0 1..260 79..336
AtPrx72 505 0 1..260 79..336
Literature and cross-references BoPrx72-1Ca_other
Literature Delehaunty,K., Fewell,G., Fulton,L., McCombie,W.R., Miner,T., Nash ,W., Rabinowicz,P.D. and Wilson,R.K. Whole genome shotgun reads from Brassica oleracea. Unpublished (2002)
DNA ref. GenBank:   23516163
Protein sequence: BoPrx72-1Ca_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   260
PWM (Da):   %s   28745.54  
PI (pH):   %s   9.02
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCDASILLDN SGTIISEKRS NPNRNSARGF ELIEEIKHAL EQECPETVSC ADILALAARD STVITGGPSW DVPLGRRDAR GASLSGSNND IPAPNNTFQT ILTKFKRQGL NLVDLVSLSG  AGSHTIGNSR CTSFRQRLYN QSGNGKPDLT LNQYYASMLR KQCPRSGGDQ NLFFLDFATP FKFDNHYFKN LITYKGLLSS DEVLFTKNKD SRELVKLYAE NQEAFFEQFA KSMVKMGNIS 
PLTGARGEIR RICRRVNHVY 

Retrieve as FASTA  
Remarks Partial sequence from 2 GSS. BH983992: Intron 1 (42 nt), 2 and 3 (250nt), BH518008: Intron 3 (27nt) and exon 4. No overlap between the two sequences.