View Redoxidase 3312

Entry information : MtRboh01 (Medtr8g095520.1[4.0] / Medtr4g144710.1[3.0])

Entry ID	3312
Creation	2007-07-23 (Christophe Dunand)
Last sequence changes	2016-04-12 (Catherine Mathe)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2016-05-25 (Catherine Mathe)

Peroxidase information: MtRboh01 (Medtr8g095520.1[4.0] / Medtr4g144710.1[3.0])

Name (synonym)

MtRboh01 (Medtr8g095520.1[4.0] / Medtr4g144710.1[3.0])

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Medicago

Organism

Medicago truncatula (barrel medic) [TaxId: 3880 ]

Cellular localisation

Plasma membrane

Tissue types

Cell culture
Roots
Stems

Inducers

Glomus versiforme infection
Insect damage (Spodoptera exigua, Meloidogyne, Aphib)
Methyl jasmonate treatment
Mycorrhiza
Nodulation
Pathogen interaction
Phytophthora infection
Salt stress
Wounding

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	MtRboh01 start..stop	S start..stop
PsRboh03	1723	0	2..899	3..901
CarRboh02	1635	0	5..898	45..933
LjRboh07	1505	0	1..898	1..897
NschRboh01	1501	0	2..898	5..929

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3312' 'join(39980837..39981365,39981593..39981755,39981840..39981888,39982067..39982180,39982280..39982702,39982842..39983225,39983333..39983428,39983568..39983683,39983817..39983919,39984008..39984081,39985259..39985794,39986031..39986140)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	39980837..39981365	527	N° 2	39981593..39981755	161	N° 3	39981840..39981888	47	N° 4	39982067..39982180	112
N° 5	39982280..39982702	421	N° 6	39982842..39983225	382	N° 7	39983333..39983428	94	N° 8	39983568..39983683	114
N° 9	39983817..39983919	101	N° 10	39984008..39984081	72	N° 11	39985259..39985794	534	N° 12	39986031..39986140	108
join(39980837..39981365,39981593..39981755,39981840..39981888,39982067..39982180 ,39982280..39982702,39982842..39983225,39983333..39983428,39983568..39983683,399 83817..39983919,39984008..39984081,39985259..39985794,39986031..39986140)

Literature and cross-references MtRboh01 (Medtr8g095520.1[4.0] / Medtr4g144710.1[3.0])

Literature	Saeed,N.A. and Rose,R.J. Expression of MtRBOH genes in response to wounding, tissue culture and salinity in Medicago truncatula.
DNA ref.	GenBank: AC141864 (36838..42640) Phytozome 12: chr8 (39980837..39986140)
Cluster/Prediction ref.	Phytozome Gene 12: 31073615 UniGene: Mtr.11466
Other ref.	Gene atlas: Mtr.17607.1.S1_at Legoo: Mtr.17607.1.S1_at

Protein sequence: MtRboh01 (Medtr8g095520.1[4.0] / Medtr4g144710.1[3.0])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	898
PWM (Da):	101847.95	Transmb domain:	o343-362i421-443o482-504i517-539o554-572i707-724o
PI (pH):	8.57

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGGSSADLHHHESDIELIAPENSTKLSTTESKSVTDVDHNIEEDADYVEVTMDIQGDSVALHSVKTVTESDMGEGEHEKQSLTGNKLEKKKSFGASVVQNATIRIKQLKRLASFSKPEPA
KRLERTKSAVAHALTGLKFISKTDVGAGWSEVEKVFDKLTVTTDGYLPRTLFAKCIGLNEESKAYAEMLFDTLARQRGIQGGSINKIQFREFWDCISDQSFDTRLKIFFDMVDKDADGRI
TEEEIKNIICLSATANKLSNIQKQAEEYAALIMEELDPDDTGYILIGNLETLLLHGPEETTRGESKYLSQMLSQKLRPTFEGNPIKRWYRDTKYFFQDNWRRSWVFALWIGVMLGLFAFK
FVQYRRRSAYKVMGHCVCMAKGAAETLKLNMAIILLPVCRNTITWLRNKTKLGAFVPFDDGLNFHKMIALAIAIGVGIHAIYHLACDFPRILHASNEKYKLIEPFFGEKPTNYWHFVKSW
EGVTGILMVVLMAIAFTLANTRFRRNRTKLPKPFNKLTGFNAFWYSHHLFIIVYAMLIIHGTKLYLTKEWNHKTTWMYLAIPITIYGLERLIRALRSSIKSVRILKVAVYPGNVLAINMS
KPQGFSYKSGQYMLVNCAAVSPLEWHPFSITSAPNDDYLSVHIKILGDWTRSLKTKFSQACQPAINGQSGLLRAECLKGDNSPSTFPKVLIDGPYGAPAQDYREYEVVLLVGLGIGATPM
ISILKDMVNNFKAMEEEDGFAMEEGSPMTPNQKDSRFSDFKTRRAYFYWVTREQGSFDWFKGVMNDVPEEDRRGLIELHSYCTSVYEQGDARSALIAMVQSINHAKHGVDVVSGTRVMSH
FAKPNWRTVYKRIALNHPEAQVGVFYCGPSTLTHELRQLSLDFSHNTSTKFDFHKENF*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 8, 11 introns), cDNA generated from 31 ESTs. cDNA (AY821801) probably contains an erroneous duplication

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGAGGATCTTCTGCAGATCTTCATCATCATGAATCAGATATAGAACTCATTGCTCCTGAGAACAGCACAAAGTTAAGCACTACTGAGTCCAAATCTGTCACAGATGTTGACCATAAC
ATAGAAGAAGATGCAGACTATGTTGAGGTGACCATGGACATTCAAGGTGACTCTGTTGCCTTACACAGTGTGAAAACTGTAACAGAAAGTGACATGGGAGAAGGGGAACATGAGAAACAG
TCTTTGACTGGGAATAAGTTGGAGAAGAAGAAATCCTTTGGTGCTTCAGTGGTTCAAAATGCTACTATTCGTATAAAGCAGCTGAAGCGTTTGGCATCGTTTTCAAAACCAGAACCAGCA
AAGCGATTGGAAAGGACCAAGTCTGCGGTGGCTCATGCTCTCACTGGACTCAAGTTTATCAGCAAGACTGATGTTGGTGCAGGATGGTCTGAAGTTGAGAAAGTGTTTGATAAGCTTACC
GTGACAACTGACGGTTATCTTCCTCGCACTCTCTTTGCTAAATGCATAGAGGTATGCTTGTTTTACCATATTGCTTCAAATGATAAATGATAAGTTAAGAACTTGGATAGTATAACCAAT
GTTTTTGATGTCTCTACCATCACAACTATTAAAGTTGCATCAGTCATATTTGACAGTAATTTTCTGCAATATCAAAGATTGCAGCACGATCAAGTGATTTGAAACTTTGATTATAAGTAT
AGAGTAATTTCTAAGTGTTTCTTTGGATTCAATTGTAGGATTGAATGAAGAGTCAAAGGCCTATGCTGAGATGCTTTTTGATACTCTTGCTCGGCAGAGAGGGATTCAAGGAGGTTCGAT
TAACAAGATCCAGTTTAGGGAGTTCTGGGACTGTATTTCAGACCAAAGCTTTGATACTAGGCTCAAAATATTCTTTGACATATGTAATTCTTTGTTTAGTTAATGTAAGCGTCAAATATT
TGTTGAATGCTCCATAAAAATATCACCAACATTGATTTTGATTACAGGGTTGACAAAGATGCAGATGGAAGAATCACCGAGGAAGAGATAAAAAATATGTATGGTACTTTTAATTTAACA
CTAAATAATCTAAATATGAGTTGCACAGTATGCACTGAACTTTATTTTTGGTGATTTTTCAACAGTAAAAAAATTAGTAAAGTAGTTTTTAATCAGCCAATTTTTGCCTGAGTGATTTTG
TGTTATTTGATCATATTTTATGTAATTCTGCTTCAGATTATATGCCTGAGTGCCACTGCCAACAAACTGTCAAATATCCAGAAACAAGCAGAGGAATATGCGGCTTTGATCATGGAAGAA
CTAGACCCGGATGACACAGGATATATCTTGTGGTAATTAAATGACAGTATCTAAATTGTAGTCTCCAGATTAAAATAACTATTTCAATATTATAGAATTGTGACCTTACTCATTTGACCA
TATTTTAACAGATAGGCAATCTCGAGACTCTCTTATTACATGGACCAGAAGAGACTACAAGGGGAGAAAGTAAGTACCTGAGCCAAATGCTAAGCCAAAAGCTTAGGCCTACATTTGAGG
GAAATCCTATTAAGAGGTGGTATAGAGATACCAAGTACTTCTTCCAGGATAACTGGCGAAGATCCTGGGTATTTGCTCTGTGGATTGGTGTCATGTTAGGCCTATTTGCCTTTAAATTTG
TGCAATATAGGAGAAGATCTGCATATAAAGTGATGGGGCACTGTGTGTGCATGGCAAAAGGGGCTGCTGAAACACTTAAATTGAACATGGCCATTATCTTATTGCCTGTTTGCCGAAACA
CCATCACTTGGCTCAGGAATAAGACCAAGCTAGGCGCTTTTGTTCCTTTTGATGATGGCCTCAATTTTCACAAGAGGTAATTTTTGCTTCTGCTTTTTCCATCAAGAGTGTCAAGATAAC
TAAATACTAGTACACACTAATACGCATATGCATTAGTCATGTTTGTAGGATTATAGCAGCTTTCACAAGGCATAAAATTATGAGTATTTTTGCAGATGATAGCTCTGGCAATAGCAATTG
GTGTTGGTATACATGCTATTTATCATCTTGCTTGTGATTTTCCTCGCATTCTTCATGCAAGCAATGAAAAGTACAAGCTGATTGAGCCTTTTTTCGGAGAGAAACCAACAAATTACTGGC
ATTTTGTCAAATCTTGGGAAGGGGTAACAGGAATTCTAATGGTTGTGCTAATGGCAATAGCCTTTACACTGGCCAATACTAGGTTCAGGAGGAATCGCACCAAACTACCTAAACCCTTCA
ACAAACTCACAGGTTTCAATGCCTTTTGGTATTCTCATCACCTCTTCATCATTGTGTATGCCATGTTGATTATCCATGGAACCAAACTTTACTTGACTAAGGAATGGAACCATAAAACGC
GGTTAGGACCTTCAGTTAACCCTTACTTTGGAATACTTTTATAACTATTTTGAACTGAAAAATAAGCTATTCACATGCACTTAATAAATCTTATTATGTGCTTTGTAGACTTGGATGTAT
CTGGCTATTCCCATCACCATTTATGGATTGGAGAGACTTATTAGAGCACTTAGATCAAGCATCAAGTCTGTGCGAATATTGAAGAGGTATGTGTCAAATAATGATAAACAAATTATTTAC
TATATGATATGAAAACAAACATGGTTCTATCAAAATTACTTCTATTAAGGTTAGTAAGTTATATATACGTCTGATCTCATTTTCATTTCATTGTCAAATTTGAAGGTGGCTGTTTATCCT
GGAAATGTGTTGGCAATTAATATGTCAAAGCCTCAAGGATTTAGCTATAAGAGTGGACAGTACATGCTTGTCAATTGTGCTGCTGTTTCTCCACTTGAATGTGGTATGGATTTATTTTGA
AGAAACATTCTATAATAAATTAAATGTGGCATCTAATTAGAGCATCATATAAGCTTGAGCTATACTTCACATTTATCTGATTTCTATACCTTCATTCATTGTTTATGCATTCACAGGCAT
CCATTTTCCATAACTTCTGCCCCTAATGATGATTACCTTAGTGTTCATATTAAAATACTTGGTGATTGGACTAGAAGTCTGAAAACCAAATTCTCACAGAGGTGAATATTATTATTAATA
TTATCGCTGACCGGAATTGATTATGTGTTTTCTTATAATTAACAAGTTTATTGCTTTTGTTTCTATCAGGCTTGCCAGCCAGCCATCAATGGACAGAGTGGACTTCTAAGAGCTGAATGC
TTGAAAGGAGATAACAGCCCAAGAGGTATGCCTTATTGTTTTTGCTTTTGGCAAATATTATTATTTTTCTACAAATATCTGATAGTAGGTAGGTAACATGCAAAAACTGTAGTTGGCTAC
GGCACTTAACAAAATATGTTTAGATTTAATTATTCAGATAACCCACTACAAGTGAGTTCCATGTTGGTTAACTTCACCTGTAAGATAAGGATTTAAATATCCGGAAAAGCCTATAACTAA
GGTTAGGACACTATTCTATTAAATAGTACGTTAGTGAAACTTAATTTCACACCAAACGAATGTAAAGTCCTTACAATATAAGTTATACGTACTTTTGGTTAATTAAAGTAAAAGGATAGC
ACAGAGTGTATGCTAGAGAACCAACTTAATTACTGGATATCATTGGATCCAATAATTGAAGAACGTGTTTTTTTTTTTTGAACAAAATTGAAGAACGTGTTTAAAGTGAATTAACCTGTT
TTTTGTTTTATCCAATTTGGTTTGGACGTCAATTTATATTCCCATAGCAACTTGACACATGCCTTGATTATAATCAAATGATTATGTTCCTAAAAAAATCAAATGATTATGTTAAGCGGG
GCCAAAAAGACTTACTATTGTCTTGTTTTTTCTGGACGAAAGTCATCTGAACTTTGAGTGGAAAAAAATAAATAAATTAGGGTGATAAGTCCGCTTTTTGAAAATATATGTATTTAATGT
AAACCGTTAAGAGTCTCACATCGATTAGGAGTTGGTCTGACAATTTGTTTATAAGTGGGGGCAATCCTCACCTCACAAGCCAGTTTTGTGGGGTTGTGTTAAGGTGTGTTAAGAGTCTCA
CATCAGTTAGGAGTTGACATAACAATTTGTTTATAAGTGGGGGTAATTCTTTTTTTAAATGATAAATGTTAATCGATTGTTGTTAAGTATAGAGATGAACCTGCTACTGCATTTTTTGAG
TTTATTATTGTTAAAAGAAAAGAAGCTTAAAATGACCTTGGTAAGCTGTAACCCAAAAAAGAAAGATAAAAAGAAATACGTTGCCCAACAGATATGTCACAGGTGGTGATGATTGAAACC
AATAATCATGCAAACGCTGATGAATTTCCTCTACCATGCATATTTGTAATTAACAACGCTTTTTCAAAAAATTATATGTATATCCAAAAATGATTGTATGTTATGATTATGATATTATGC
AGTACTTTCCCTAAAGTTTTGATTGATGGTCCGTATGGAGCGCCAGCACAAGACTACAGGGAGTATGAGGTGGTTTTACTTGTGGGGCTGGGAATAGGGGCTACCCCAATGATAAGTATA
CTAAAGGACATGGTCAATAATTTCAAGGCAATGGAAGAGGAAGATGGGTTTGCAATGGAGGAAGGGTCACCGATGACACCAAACCAGAAAGACTCTAGGTTCAGTGACTTCAAGACAAGG
AGGGCATACTTCTATTGGGTGACAAGAGAGCAGGGTTCCTTTGATTGGTTTAAAGGGGTGATGAATGATGTACCTGAGGAGGATAGAAGGGGATTGATTGAGCTACACAGCTACTGCACC
AGTGTTTACGAACAGGGTGATGCACGCTCTGCTCTTATCGCTATGGTGCAGTCTATAAACCATGCAAAGCACGGGGTGGATGTTGTGTCCGGCACTCGTGTCATGTCTCATTTTGCTAAA
CCCAATTGGCGCACTGTCTACAAACGCATTGCACTTAATCATCCGGAAGCACAAGTTGTGGTGAGTTCCCACTTATTGAATGTGACAACTGCTTTTGTTGTTTTCTTGAAAATCAAAAGT
TAAAAAAAGTACATGTTGATCAATGATCGATAATATGCTTTGGAGTGTTAATTTCAACATAAAAAGAAAACGGTGCTTGCTTTTTTTATCAAAATCAATCATGCATTTACCTTTTTATTT
GACGTGTTTCGTTAAACTTAATAGACAGTTTTTTTTTTTTTTTTTATGTAATGCAGGGGTATTTTACTGCGGGCCATCCACCCTGACCCACGAGCTTCGTCAGCTATCGTTGGATTTCTC
TCACAACACATCAACCAAATTCGACTTTCATAAAGAAAATTTCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CGGCCGGGGA AAAAGGAGCA AATGAGTCTG ACAAAAGAGA TCAGAAAGTG TTGAATCAGT GCTTCAGAAA AACAAAACAG CAACATGGGA GGATCTTCTG CAGATCTTCA TCATCATGAA TCAGATATAG AACTCATTGC TCCTGAGAAC AGCACAAAGT TAAGCACTAC TGAGTCCAAA TCTGTCACAG ATGTTGACCA TAACATAGAA GAAGATGCAG ACTATGTTGA GGTGACCATG GACATTCAAG GTGACTCTGT TGCCTTACAC AGTGTGAAAA CTGTAACAGA AAGTGACATG GGAGAAGGGG AACATGAGAA ACAGTCTTTG ACTGGGAATA AGTTGGAGAA GAAGAAATCC TTTGGTGCTT CAGTGGTTCA AAATGCTACT ATTCGTATAA AGCAGCTGAA GCGTTTGGCA TCGTTTTCAA AACCAGAACC AGCAAAGCGA TTGGAAAGGA CCAAGTCTGC GGTGGCTCAT GCTCTCACTG GACTCAAGTT TATCAGCAAG ACTGATGTTG GTGCAGGATG GTCTGAAGTT GAGAAAGTGT TTGATAAGCT TACCGTGACA ACTGACGGTT ATCTTCCTCG CACTCTCTTT GCTAAATGCA TAGGATTGAA TGAAGAGTCA AAGGCCTATG CTGAGATGCT TTTTGATACT CTTGCTCGGC AGAGAGGGAT TCAAGGAGGT TCGATTAACA AGATCCAGTT TAGGGAGTTC TGGGACTGTA TTTCAGACCA AAGCTTTGAT ACTAGGCTCA AAATATTCTT TGACATGGTT GACAAAGATG CAGATGGAAG AATCACCGAG GAAGAGATAA AAAATATTAT ATGCCTGAGT GCCACTGCCA ACAAACTGTC AAATATCCAG AAACAAGCAG AGGAATATGC GGCTTTGATC ATGGAAGAAC TAGACCCGGA TGACACAGGA TATATCTTGA TAGGCAATCT CGAGACTCTC TTATTACATG GACCAGAAGA GACTACAAGG GGAGAAAGTA AGTACCTGAG CCAAATGCTA AGCCAAAAGC TTAGGCCTAC ATTTGAGGGA AATCCTATTA AGAGGTGGTA TAGAGATACC AAGTACTTCT TCCAGGATAA CTGGCGAAGA TCCTGGGTAT TTGCTCTGTG GATTGGTGTC ATGTTAGGCC TATTTGCCTT TAAATTTGTG CAATATAGGA GAAGATCTGC ATATAAAGTG ATGGGGCACT GTGTGTGCAT GGCAAAAGGG GCTGCTGAAA CACTTAAATT GAACATGGCC ATTATCTTAT TGCCTGTTTG CCGAAACACC ATCACTTGGC TCAGGAATAA GACCAAGCTA GGCGCTTTTG TTCCTTTTGA TGATGGCCTC AATTTTCACA AGATGATAGC TCTGGCAATA GCAATTGGTG TTGGTATACA TGCTATTTAT CATCTTGCTT GTGATTTTCC TCGCATTCTT CATGCAAGCA ATGAAAAGTA CAAGCTGATT GAGCCTTTTT TCGGAGAGAA ACCAACAAAT TACTGGCATT TTGTCAAATC TTGGGAAGGG GTAACAGGAA TTCTAATGGT TGTGCTAATG GCAATAGCCT TTACACTGGC CAATACTAGG TTCAGGAGGA ATCGCACCAA ACTACCTAAA CCCTTCAACA AACTCACAGG TTTCAATGCC TTTTGGTATT CTCATCACCT CTTCATCATT GTGTATGCCA TGTTGATTAT CCATGGAACC AAACTTTACT TGACTAAGGA ATGGAACCAT AAAACGACTT GGATGTATCT GGCTATTCCC ATCACCATTT ATGGATTGGA GAGACTTATT AGAGCACTTA GATCAAGCAT CAAGTCTGTG CGAATATTGA AGGTGGCTGT TTATCCTGGA AATGTGTTGG CAATTAATAT GTCAAAGCCT CAAGGATTTA GCTATAAGAG TGGACAGTAC ATGCTTGTCA ATTGTGCTGC TGTTTCTCCA CTTGAATGGC ATCCATTTTC CATAACTTCT GCCCCTAATG ATGATTACCT TAGTGTTCAT ATTAAAATAC TTGGTGATTG GACTAGAAGT CTGAAAACCA AATTCTCACA GGCTTGCCAG CCAGCCATCA ATGGACAGAG TGGACTTCTA AGAGCTGAAT GCTTGAAAGG AGATAACAGC CCAAGTACTT TCCCTAAAGT TTTGATTGAT GGTCCGTATG GAGCGCCAGC ACAAGACTAC AGGGAGTATG AGGTGGTTTT ACTTGTGGGG CTGGGAATAG GGGCTACCCC AATGATAAGT ATACTAAAGG ACATGGTCAA TAATTTCAAG GCAATGGAAG AGGAAGATGG GTTTGCAATG GAGGAAGGGT CACCGATGAC ACCAAACCAG AAAGACTCTA GGTTCAGTGA CTTCAAGACA AGGAGGGCAT ACTTCTATTG GGTGACAAGA GAGCAGGGTT CCTTTGATTG GTTTAAAGGG GTGATGAATG ATGTAGCTGA GGAGGATAGA AGGGGATTGA TTGAGCTACA CAGCTACTGC ACCAGTGTTT ACGAACAGGG TGATGCACGC TCTGCTCTTA TCGCTATGGT GCAGTCTATA AACCATGCAA AGCACGGGGT GGATGTTGTG TCCGGCACTC GTGTCATGTC TCATTTTGCT AAACCCAATT GGCGCACTGT CTACAAACGC ATTGCACTTA ATCATCCGGA AGCACAAGTT GGGGTATTTT ACTGCGGGCC ATCCACCCTG ACCCACGAGC TTCGTCAGCT ATCGTTGGAT TTCTCTCACA ACACATCAAC CAAATTCGAC TTTCATAAAG AAAATTTCTG ATAAGAAGAA AATAATTGAG GATAACAGTG GAAGGTGTGG AACGAGCCAG TCCTCCACCA AGATGACTCA GCTATAATCA TGTATTGTCA CCACCCTTTT GTTGATAACT ATAGTGTGCT TCTATACCAA TGGTTGTTAA TTGTTATAGC TTTGTAAAAG GACCAAGGTA AACGTGGGGT AAATGGTTAG GTGGTGAGTT GGCTACCAAA TACTAAAGGT GAGGTCGGAT GGCCCCCTTG GATAAGTGTG TCGTCATGTC TGTATAAATT TAATTAATTA TTAAAGGGAA ATAGATAACC ATGAGAAGGC TTTTTTGTTT TTTTGTTTTG TTTTTCATTC ATTATAGTCG TCCCAGGAGA AGGGACCTGG AAGGAAGTAA ATCAGGAGGG AAATAATTTG TCCAGATGCA GTACAATTAA TAGTTTATTT TTAATTTTTG TTCAAAAAAA AAAAAAAAAA
A

Retrieve as FASTA