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Entry information : GmPrx[P]125
Entry ID 3775
Creation 2006-08-25 (Christophe Dunand)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-12-02 (Qiang Li)
Peroxidase information: GmPrx[P]125
Name GmPrx[P]125
Class Class III peroxidase     [Orthogroup: Prx025]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue types Roots
Seeds
Stems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]125
start..stop		 S start..stop
GmPrx125 421 6.33e-151 1..243 70..312
PvPrx13 354 2.28e-124 1..241 71..311
MtPrx89 336 5.18e-117 1..242 70..313
MtPrx[P]116 293 1.92e-100 1..242 66..308
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3775' 'join(37323520..37324242)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 37323520..37324242 721  
join(37323520..37324242)


exon

Literature and cross-references GmPrx[P]125
Literature Chen,W. and Atherly,A.G. Direct Submission.
DNA ref. Phytozome 12:   Gm19 (37323520..37324242)
Protein sequence: GmPrx[P]125
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   243 (357)
PWM (Da):   %s   25854.33 (38907.0)  
PI (pH):   %s   9.25 (4.33) Peptide Signal:   %s   cut: 22 range:22-378
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
SLLINSTKAN MAEKDSGTND SVRGYNLIDE AKKTLEAACP STxSCADIIT LATRDTVALS RGPKYNLWTG RRDRLVSNIN DVNIPGSDSP VSVTLQFFAS KGITKQEMVT LFRAHTVGVA  HCSFFAGRxS RAKPDPTMDP ALNAKLVKLC NSRGDPATPL DQKSSFVFxx EFYKEILAKK GLLQIDQQLA LDAGTKGFVL DFASNGDKFQ KGFANAIVKM GEIDVLVGNQ GEIRKKCSVF 
NRN 

Retrieve as FASTA  
Remarks Partial or pseudogene sequence from genomic (exon 1 is missing, two frame shift in the exon 4). No prediction from phytozome.
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCCCTACTCA TAAACTCCAC CAAGGCCAAC ATGGCAGAGA AAGATTCCGG CACCAACGAC AGCGTTCGGG GCTACAACCT CATCGACGAA GCGAAGAAAA CCCTCGAGGC AGCATGTCCT  TCAACTGnnT CATGTGCAGA CATCATAACC CTAGCAACCA GAGACACCGT GGCCTTATCA AGAGGACCCA AATACAACCT TTGGACGGGA AGACGCGACA GATTAGTATC CAACATCAAC  GACGTCAACA TTCCAGGATC TGACAGTCCT GTGTCCGTAA CATTACAATT CTTCGCGAGT AAAGGCATAA CAAAACAGGA AATGGTGACC CTTTTCAGAG CACACACCGT TGGTGTTGCA  CATTGTAGTT TCTTTGCTGG CAGAAnnTCT CGGGCGAAAC CTGACCCTAC TATGGACCCT GCATTGAATG CTAAGTTGGT GAAGTTGTGC AACTCGAGAG GGGATCCAGC TACACCTTTG  GATCAGAAAA GTTCTTTTGT TTTTTnnnnn GAGTTTTATA AGGAGATTCT TGCGAAGAAA GGATTGCTGC AGATTGATCA GCAGCTTGCA TTGGATGCGG GTACCAAAGG GTTTGTATTG  GATTTCGCTT CGAATGGTGA TAAGTTCCAA AAGGGTTTTG CGAATGCGAT TGTAAAGATG GGGGAGATTG ATGTTCTGGT TGGGAATCAA GGTGAAATTC GTAAGAAATG CTCGGTTTTC 
AACCGCAACT AG 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCCCTACTCA TAAACTCCAC CAAGGCCAAC ATGGCAGAGA AAGATTCCGG CACCAACGAC AGCGTTCGGG GCTACAACCT CATCGACGAA GCGAAGAAAA CCCTCGAGGC AGCATGTCCT  TCAACTGnnT CATGTGCAGA CATCATAACC CTAGCAACCA GAGACACCGT GGCCTTATCA AGAGGACCCA AATACAACCT TTGGACGGGA AGACGCGACA GATTAGTATC CAACATCAAC  GACGTCAACA TTCCAGGATC TGACAGTCCT GTGTCCGTAA CATTACAATT CTTCGCGAGT AAAGGCATAA CAAAACAGGA AATGGTGACC CTTTTCAGAG CACACACCGT TGGTGTTGCA  CATTGTAGTT TCTTTGCTGG CAGAAnnTCT CGGGCGAAAC CTGACCCTAC TATGGACCCT GCATTGAATG CTAAGTTGGT GAAGTTGTGC AACTCGAGAG GGGATCCAGC TACACCTTTG  GATCAGAAAA GTTCTTTTGT TTTTTnnnnn GAGTTTTATA AGGAGATTCT TGCGAAGAAA GGATTGCTGC AGATTGATCA GCAGCTTGCA TTGGATGCGG GTACCAAAGG GTTTGTATTG  GATTTCGCTT CGAATGGTGA TAAGTTCCAA AAGGGTTTTG CGAATGCGAT TGTAAAGATG GGGGAGATTG ATGTTCTGGT TGGGAATCAA GGTGAAATTC GTAAGAAATG CTCGGTTTTC 
AACCGCAACT AG 

Retrieve as FASTA