Sequence Properties
first value : protein second value (mature protein) |
Length (aa): |
289 (310) |
PWM (Da): |
31445.17 (35101.0) |
Transmb domain: |
o260-282i |
PI (pH): |
7.03 (7.80) |
Peptide Signal: |
cut: 25 range:25-334 |
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Sequence
Send to BLAST
Send to Peroxiscan
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MAAPVVDAEYLRQVEGARRDLRALIASKGCAPIMLRLAWHDAGTYDAKTKTRGANGSIRHEEEYTHGSNAGLKIAIDLEPIKRKHPNITYADLYLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGRLPDAKKGAPHLRDIFYQMGLTDKDIVALSGG HTGKAHPERSGFDGAWTKEPLKFDNSYFLELLREESEGLLKLPTDRALLEDPEFRRFVDHYADEDAFFKDYAESHKKLSELGFAPRSSAKSDGSTAAATLAQSAFGVAVAAAVVVIAGYL YESSKKTK* |
Retrieve as FASTA
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Remarks |
Complete sequence from genomic DNA (chromo 9, 9 introns), 1 mRNA and 3 ESTs. Extra intron just before VALSGGHT (=> short exon). sequencing error or pseudogene? Incorrect prediction from Phytozome (only the second part is predicted) |
DNA ►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGCGGCTCCGGTGGTGGACGCGGAGTACCTGCGACAGGTCGAGGGGGCGCGCCGCGACCTCCGCGCGCTCATCGCCTCCAAGGGCTGCGCCCCCATCATGCTCCGCCTCGCGTCCGTA ACCGATCCTCACACCCCTCTCTCTCGCTGTGCTTTTTTGATTCGGTCGATTTACTCGTGCGGGGGTTTATACTGATCGATCGATCGAGTGTCGGATCGAGCTGGACGAGCAGTTGTTCTT CAGTGCTTGCCTGCTTTGGGTGTTTGTAGCTAGGGGGTTAATTCGTCGGTGACTGCGTGCTAGCCATAATTATCTTTACAGCTCGGGGATTCTGAAGTTATCATAGGAAGTGCAGAGTGC TCGCTCTCCAAGCCATCACTGATTCACGGTACTGTTGGTTGCTAGCTGCAAGGTTGTTGCACGGCCACACAAGTTTGCTAGCAATTGAAATGCCTTCCTGGATCCCAGGAGGGCCACCAC ATCCTAGTATGAGGAAAGGCTTAATTTTCTTGGGGGAATGGAATTTGGGGGAGAATGGTGACATACTGACATATTCTCAATCGGCAGGCAGGTTATATATGTGAATGTAATGTAGCCCCA TTTTCTAGCAACAGCACAGAAGTAAGTACTTTGAGAATCTACGAACTCACGCTGAATATCATATACTCCCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCA TTCGTCTTATTCAAAAAATTTATGCAAATGCATAAGATATAAATCATACTTAAAGTACTATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTGAATAAGA CGAATGGTCAAACATGTGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGGTAGTAATAGTCTTGAGATGGTCGTCCATACACCTTTTGGAGCTAGGGCCACGTTTTCATAGTAA AAAAGAATGGTGGTCCAAAGGCTTGATCAGGATGGTTTCTGTGGACTGACCGTGTAATCTGTCACTGGGGCAAGCGGAATCCTACAATCGGATTTGGAGGAGGATTAGGCTCTGCATTTC TACCGTCAAATGGCACTTGATTCCTTTGTGTCTCACTTCCTTACCTCTTTCTCTTTTTCTTGCTTCCATCCATGAATCTTGTTTCATTCTTCCTCCAAAAGAACTGAACTCTGCATCGTC ATAGTCATATTATGTAATTGGAGGAGTTTTTAGTTTTTACCTTTGCGAGAATAAAGCTTCTATATTTCTTACCTTTGAGGCCTCATATATATTTACATATTTTGTTTGAACCTTGCGATC CTTCTCTATTAATGAAATAGGCAACACTCCTGCTTATATTTCAAAAGAAAAAAAAGAATCCGTGCCTTTCTCACCGGGGATTGGATGCTAGTATCTTAGTCTGATACGAGTATATGCATA CTTGGAATTGGAGGGTCAAGGGCAGCATGTTGTCCCTTTTGGACACTTAGTACCAAAATTTTATATTCATTACAGCACCAGAACAAGTTGTTTCGCCATCTTTGTGATAATTGATACTAG TGTTTTTGGCGACACATACCTTGTTATGCACTTATGTCCACATGCCAAAGTAGTAACTAGTAAGGGCAACCCCCCCAAAAATAAAAATCTTTAGTAGTATGATTTTGGCTTCTCAGTCAG TCATTTGGTGTGTGTTCCTCCATGAAGCTTCCATGTTTATCTTCCTTGTTAGATAGTTACTTTGCCATTCTCTTTTTCATGTGGAGACTTTATCTTCTGTACTTGCAGATATGGCATGAT GCTGGCACATATGATGCAAAAACAAAAACTAGGGGTGCAAATGGTTCAATTAGGCATGAGGAAGAGTACACTCATGGTTCAAATGCTGGACTAAAAATTGCCATTGATCTCCTTGGTGTG TACTTTGCAATATCATTGACCTTGTAGCTACATAATTTTCTACTTGTTTGTCCTTGTGTAGGCAATCCTCACTTGTTGCCGATCATTTTAAGAAGATTAATTGATGTGTTACTGATCTTG TTCCTTCTCTTGTAGTAGCCTAGTAGCTTTGAAACTTGATTACGGTGGTCTCTTCCCTCTTCACTTTTATCACCGGAAGCTTTTGCTTCTGTTTACTACTTGACCTTGGAAAATTGTAAC ACCATTCTGATGACTTCATTGAGTAATTCGTTCTTCTGTACAGAACATTATTGGTTGCCAAGTCATTTTACTTCAATGGTTCTTTAATAAATTGTGTCATGATTACCACTTATCTGGTTG TCTTATTTTCTGACAGAGAGCCTATTAAGCGAAAGCATCCAAATATCACTTATGCTGATCTTTATCAGGTACTCTGGATTCCTCCATTGTGTTTCTTGTTTCTATATAGCCTCAAGAGAG TAATAAAATTTCTGATATTGATTTTTTTTTGGCATGGTACTCCCTCTATTGATTTTACAAGTCATTTGACCTGACAATGTGTCCAGAGTTAAACATTGACCTACAAAATCATGATAGCAC AGAAGTACTTCTAATAAAAATATAAAATTTGTACTACTTAAACATATATAAATGTCGGAAAACTTTTGGCAAAATAAGGGATTATCTGCGGTTACATCATTGCTTTTGCATGATTCTTCA TAGTAGAATTGAAATGATATTTGAGTAAATTTCATAAAACTACATATACTTTGTATGATCTATCACAAAACTACAGATTTAAGAACTTATTTCACAAAACTACAGATTTAATATCTTCGT TTATCACAAAACTACAAGTATTATGCACAATATATCACAAAACTACAGATTTAAGAACTTGTTTCACAAAACTGCAGATTTAATATCTTCATTTATCACAAAACTACAGGTTTTAACCTG TAGTTTTGTGATAATGGAGACACTAAATTTGTAGTTTTGTGATAAATGAAGACACTAAATCTGTAGTTCTATGATAAACGAATACACGAAATCTATAGTTTTGTGAAACAAGTTTTTAAA TCTGTAGTTTTGTGATAGATTGTACAAAGTACCTGTAGTTTTGTGATAAACGGACATACTAAATCTGTAGTTTTGTGAAACAAGCTCTTAAATATATAGTTTTGTGATAAATTATGCAAA ATACCTGTAGTTCTGTGAAATTTACTCATGATATTTTGATGAACTAACCAGGATTATTTTTACTTCTCAGCTCTTGCTGGAGTGGTTGCAGTTGAAGTTACTGGAGGTCCAACCGTTGAC TTTGTTCCTGGAAGAAGGGTAAATGAAATGTCATTTCCTTGTAGACGGATGCATTATCTTTGCCTTGTTCACTATGTAACTGATTTGTAATGTAATCAGGAGACTCATCAGTTTGCCCGC GAGAAGGACGTCTTCCTGATGCGAAGAAAGGTTATTACTAAAGCCTTCTCATTATGCTGAATATAGATATATTCTTGTTGAGAACTTAGAATGAATTATCCACTAGAAGCATATGTCCTC TAGTTGAACTATTGCTGCATTGTTAATGATCAACATGTTACAGTAGCGGTTGCTTTGCATGAGCCATCCAATATACACATTTGTTCAGGAGTATTTCTTCTGAGCGCAAAAGAATATTCT TCAGGTTGAATTCTTGGTTAACCGTCAGTGTATTGGCCTTTTCGCATGTCATATTGAGGCTACCACTTCTCAAATTTTATGGTTTACCTTTGCAGTAGGCTTTGTACAACTGTTGAACAT CTACTATTATTCTATTTTGTCTGCTTAGGTCATATTCACCGAGGCCGCGAGGCATAAATTTTGATTACTCTTTCTTGTTTGCTGGTTAGGTGTGCACCACATTTAAGAGACATCTTTTAT CAAATGGGATTGACTGACAAGGATATTGTAGCTAGGGGTGAAAACGGTACGGAAACTTTCCGGATACCGGACCTATTTTCGAAAACGGAATTTGTCGGTCGGAATTTTTCGGAAACGGAA ACAAATTCGGAAATATTTTCCCGGAAACGGAATCGGAAATGATAAGGGCAGTTTCCGTCGGAACTCAGAATCGGTCGGAAACTTTCCAGAAATTTTCTTGGAATTACCAGAAATTTTGTG ACTGAAATACCCTAGATTCTTTTTTTAAGCACTAAATAGTGAATACCATGGTGTTTGGCTTTTATTTTTTTAAAAAATATTTGTTATGCAAATCTAAAATTACATAAGAATATTTTTTGT CTTACATTGGGATTTATCAACAACATTATTATTTTAAACATAGATAATTTATTCAATTGGATTTATCAGTTTGAGGGGTTTTTTATTCCAATAAATTTTTGTTACCGTATTCGCGCCGGT TCGTTTTCGCTCCGTTTTCGGTTTTGATAATATTCGATTCCGTTTTCGTATCCGGGGTTTCCGATTCCGATTCCGATTCCGAAAAAAAATATGAAAACGAAAACGATAAAGATGGTTTCC GTCCGTTTCCGTACCGTTTTCACCCCTAATTGTAGCTCTCTATCTGGTGGCCACACCCTGGTGATAATTTCGTTCTCCATTTGAATATAAGCACCTGGTAATTATTTGTATCATCACACT GCCAGGATTGTTTCTCACAGGGGGAAAGGCACATCCTGAAAGATCTGGATTTGACGGTGCATGGACCAAGGAACCACTTAAGTTTGACAACTCTTACTTCCTGTAAGCTCAATGTTAAAC CATCTATCATACGTTTGCTTTGGGAACTAGTGATGAGAGATTGATGACATTTTTCTCCATATTCATTTAGAGAGAACTGCTGAGGGAGGAATCAGAGGGACTTTTGAAACTTCCAACTGA CAGGGCTCTCCTGGAAGATCCTGAATTCAGGCGCTTTGTGGATCATTACGCGAAGGTAAATGATAGATGATGTATCCTATTCAGAGCTACATGGATGCCTCAGAATATACCTACAACTCC TATCCTCAAATGGCAGGAGATGAGGATGCCTTCTTCAAGGACTACGCTGAATCACACAAGAAGCTCTCCGAACTTGGGTTCGCTCCACGTAGCTCTGCAAAATCAGATGGTTCAACGGCT GCTGCTACACTCGCGCAGAGTGCGTTTGGGGTCGCAGTTGCTGCAGCCGTAGTAGTTATCGCAGGTTACCTCTACGAGTCTTCTAAGAAAACCAAGTAG |
Retrieve as FASTA
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CDS►
Send to BLAST
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGCGGCTCCGGTGGTGGACGCGGAGTACCTGCGACAGGTCGAGGGGGCGCGCCGCGACCTCCGCGCGCTCATCGCCTCCAAGGGCTGCGCCCCCATCATGCTCCGCCTCGCATGGCAT GATGCTGGCACATATGATGCAAAAACAAAAACTAGGGGTGCAAATGGTTCAATTAGGCATGAGGAAGAGTACACTCATGGTTCAAATGCTGGACTAAAAATTGCCATTGATCTCCTTGAG CCTATTAAGCGAAAGCATCCAAATATCACTTATGCTGATCTTTATCAGCTTGCTGGAGTGGTTGCAGTTGAAGTTACTGGAGGTCCAACCGTTGACTTTGTTCCTGGAAGAAGGGACTCA TCAGTTTGCCCGCGAGAAGGACGTCTTCCTGATGCGAAGAAAGGTGCACCACATTTAAGAGACATCTTTTATCAAATGGGATTGACTGACAAGGATATTGTAGCTCTATCTGGTGGCCAC ACCCTGGGAAAGGCACATCCTGAAAGATCTGGATTTGACGGTGCATGGACCAAGGAACCACTTAAGTTTGACAACTCTTACTTCCTAGAACTGCTGAGGGAGGAATCAGAGGGACTTTTG AAACTTCCAACTGACAGGGCTCTCCTGGAAGATCCTGAATTCAGGCGCTTTGTGGATCATTACGCGAAGGATGAGGATGCCTTCTTCAAGGACTACGCTGAATCACACAAGAAGCTCTCC GAACTTGGGTTCGCTCCACGTAGCTCTGCAAAATCAGATGGTTCAACGGCTGCTGCTACACTCGCGCAGAGTGCGTTTGGGGTCGCAGTTGCTGCAGCCGTAGTAGTTATCGCAGGTTAC CTCTACGAGTCTTCTAAGAAAACCAAGTAG |
Retrieve as FASTA
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