View Redoxidase 4354

Entry information : AtPrxII06 (At3g06050 / PRXIIF / PeroxiredoxinIIF / Thioredoxinreductase2F / AtPrxIIF)

Entry ID	4354
Creation	2007-01-31 (Christophe Dunand)
Last sequence changes	2015-06-03 (Christophe Dunand)
Sequence status	complete
Reviewer	Achraf Jemmat
Last annotation changes	2015-11-12 (Achraf Jemmat)

Peroxidase information: AtPrxII06 (At3g06050 / PRXIIF / PeroxiredoxinIIF / Thioredoxinreductase2F / AtPrxIIF)

Name (synonym)

AtPrxII06 (At3g06050 / PRXIIF / PeroxiredoxinIIF / Thioredoxinreductase2F / AtPrxIIF)

Class

Atypical 2-Cysteine peroxiredoxin (type II) [Orthogroup: PrxII001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis thaliana [TaxId: 3702 ]

Cellular localisation

N/D

Tissue types

Buds
Mixed tissues
Roots
Seeds
Whole plant

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AtPrxII06 start..stop	S start..stop
AlyPrxII06	405	5.19e-147	1..201	1..201
TsPrxII06	390	4.5e-141	1..201	1..201
ThasPrxII03	362	1e-129	1..201	1..201
CclPrxII05	318	4.09e-112	1..201	24..224

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '4354' 'complement(join(1826311..1826416,1826507..1826601,1827227..1827385,1827478..1827507,1827594..1827809))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1827594..1827809	214	N° 2	1827478..1827507	28	N° 3	1827227..1827385	157	N° 4	1826507..1826601	93
N° 5	1826311..1826416	104
complement(join(1826311..1826416,1826507..1826601,1827227..1827385,1827478..1827 507,1827594..1827809))

Literature and cross-references AtPrxII06 (At3g06050 / PRXIIF / PeroxiredoxinIIF / Thioredoxinreductase2F / AtPrxIIF)

Literature	Salanoubat M. et al. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." Nature 408:820-822(2000).
Protein ref.	UniProtKB: Q9M7T0
DNA ref.	Phytozome 12: Chr3 (1827809..1826311)
Cluster/Prediction ref.	Phytozome Gene 12: 19661111 UniGene: At.20442
Omic ref.	ePlant: At3g06050 TAIR: At3g06050

Protein sequence: AtPrxII06 (At3g06050 / PRXIIF / PeroxiredoxinIIF / Thioredoxinreductase2F / AtPrxIIF)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	201
PWM (Da):	21319.05
PI (pH):	9.39

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAMSILKLRNLSALRSAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDP
FAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAVNVEEAPSDFKVTGAEVILGQI

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 3, 4 introns), 4 cDNA and 70 ESTs.

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TTGTTAACCA AGGTGTGTTT ACGGCGAAGG AGCTGGTGAA ACATAGTCCT GAAGATGTCA AATTCACGAT TGACGTAAAT CTTGTTGGGA GCTTCAATGT GATTAAAGCC GCTTTGCCTG CCATGAAAGC AAGGAAAGAT CGTGGACCTG CTTCCATCAG TCTCGTCTCC TCTCAAGCTG GTCAGGTTCG TCTCTCAAAT TTCCCATCTT TATGGATTTA AGTTTTATCT GGAGATTGTA GTTACCTGAA GTAAGACATT GACAATTTAT CACTTGAAGT AACTTTTGTG TAACTGCAAT AATGTGACCT CATGTAATGC AGTTTTAAAG ATAGAATGAT GAAGGATGTT TTTTTTAATA AAATTTTCAG GTTGGTGTCT ATGGTTATGC TGCATATTCA GCAAGCAAGT TTGGTCTTCA GGGTTTAGCG CAAGCATTGC AACAGGAAGT TATATCTGAT GATATTCATG TCACTCTTAT TTTTCCTCCT GACACTAATA CACCCGGCTT TGAAGAAGGT AAAAAAGCTT CAGTATTTTT CAGATTCATC ATGGATGTAT AGAGCAGATA ATCTAAGTTT AACATGTGAG GGTAGCTAGG ATTAGGTACT GCTACTAAAT ACTAAGGCAA TTAAATGTAT AAAAGAGTTG GAGACAGATT ACTAAATAAG GCTGTACTAT ATGGTTGGGA CATATGTAGA CATAAACTAT TATTCATCTA GTTTGTTATT ATGAGATCAA ATATGTGCCC TTATCTGGTC TGAATAATTG TGTACTCTAT CAAACACGTA GCATTTCATG TTCACATGTT CTATGAGAGT GCCAGTTAGG AGAAACTGAT AGACTGGTGA GTTAAGTACT GAGTACTGTG ATAGTGTTTA GCTTGAAGTC TCTGCGTACT GTGGTTCACA TGATACTGTT TAGAAGAGAA TAATGGGATG TAGTTATCTT CCAATAGCAT CTGAAAATTT CATAAAAGAC TTCTTTTTGC CTATCTGAGA ATGAAGTAAG CACTTTTTTT TTTTTGATAA CTAATGAAGT AAACACATTA TGGACTGATG TTCTGAGTTC CTTGGTTCAT ATTATGAGTT TGATTGATTT TCCTTGGGTG CTCTCTCAGA ACAGAAGAGC AGACCTGAAG TCACTGCCAT AATAGCTGCA TCCTCTGGTT CAATGGAAAC AGAAGAAGTA GCAAAAAAGG CTATGGATGG CATAAAAGCA GGAAACTTCA CCGTCTCATG CAACTTTGAG GGATTCTTAC TGTCTCTCGC GACAACCGGC ATGTCCCCTC AAAGATCATT TTGGCTTGCT TTTCTTGAAG TTATAACCGC AGGGCCTATA AGATTAATCG CTCTCTTCTT TCAATGGGAT TGGTATAAAG CCATTGAAAA ATGGAGCAAA ACCAAAACCA AATGGTAAGT TCCTAATGCC ATCAAGTTGT CATCATATAG AATTTGCTCT TGCTTGACTG CGACATCACT ATTCTAAAAT TGCTTCTCTT TTGTAATTTC AGACAGCCCG ACAATGTATC TTGAAGTGCT TTTGGCAGAA GCTTAAACAT TGATGGGTAT TCTCAAACCT TCTTCTCAGT CCGGTACCAC GCCAGCTAGT CGACTATACC AATTCAGAAT ATCGACATTG CTGATAGTTT TGTAGAAACT CGTCAAGATT CATGTTTCCG GTCTTTGAAC AAGCTCTGTT TTTTCTTTTT TTTTATAGAG AAATCAAAGA ACTCATTTGA ATGTATTTTT TACTTGGTCA AGAAGTGAAT GTTTTTCACA AGATGAAATG TAAATGATGT ATTTGAAAGA AGTAAAAACT TCAAAACCAA AATTTGAGTG TGTGCTGTTC TTGAGGCTTT TAAACAACGT GCAGTCTGAT TTGTTTGTTA CAAAACGGCA ACGATTAAGT CTCTTTAGAA
AGGTCTTTGA GAAGTGCCAT AAACGACACT ATACAGTAAT CGAAGGAACC AAGAAACGGT CTCAATCTTA TTTTCAGCG

Retrieve as FASTA

Terminator +►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

AAAGTATTTC CAGAGTTGCT GTTTCTTCTG AGTTGCAACT GATAATAAGT TTGATCCGAA CATGTCTCAA GGATCAGACC AAGTAACAGC TTCACTTCTT TTGTTTTGTT TCCACAGTTT CAGTTTAAAT AAAACTTATG TGTCTTGCCG TTTCTCACCA AATGTAAATC TGGTTCATAA TATGAATAAG AAACCAATGT GGTTGAGGGA TATGATTTTT CGTGTCCCCA TTGTCAACAT GAAGGTTAAG ACTCCTCTGC TTAATCCTAA GTCTCCCACT CGTGTTCTTG AGCAATTTAG CTTCTTTCCT CGCTACCTGG TGTTTCTCCT TCCATTGTTG AGTCTCTAAC CTTGTGGCCT CGAGATCTGT TTCTGCAATC ACAAGCTGCT CTTTCATTTG ACTAAAATCC GGAGCCAGCT ATTTCAAACC CAATGCCAAA TAAAGCCATT GCTTGTGGAG TATGAAGGTA TATAGATGAA CTAGGTGCTG CTCTTGAGGG AGGACATGAA AGCTGAGTGG GTTGTTGTGA AAGGCCTTAC AAGGACGTAG TATGTCAAAT TTGTTGATAA GATCCTTATT GGGCTTGGCC CATAGACAAA AGTAATTTTG AGCCGAAAAG AGGAATCTTT CCACTCTAAA CCCTATGCGT GACTCATCTC CGTCTCTCAC AGTAATAATC AAGTCAGAGC CGGCGAAGCT TGCCGTTTCC GCCGTTGGAG GTAAGCCTTA TCTCTCTTTC TCATCTCCTT CTCCGATTTC CAACTCTCAG ATAATAGATT GGCGGTTCAT GGATCCCATT GTTTGATTTC GGAACTGTGT TAGCAGCTAA TAACCTAGAC TATCAAATCT GATACATTGG AATTTATATT TGGGCTATTG ACGCTGAAAC CGATCTTATG AATCATCCTT TCTTACTCAC CATTTTGTTT CACTGATCTT GATATGTTCA TTTGATCTGC
AAAGAAGAAA CCTTTGAACC TAAACCTATA CAATAGAAAC

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGATGTCAATTCTAAAGCTAAGAAATTTATCGGCACTAAGATCGGCGGCAAATAGTGCCCGGATCGGAGTTTCATCGAGGGGTTTCTCAAAGCTCGCGGAAGGCACTGACATAACC
TCGGCGGCGCCTGGCGTTTCTCTCCAGAAAGCTCGCAGCTGGGACGAAGGTGTTTCCTCCAAATTCTCCACCACGCCATTGTCAGATATCTTCAAGGTTCGAATCTCTCTTTTCTGACAA
TTTCAATTCAGAGGGGGATTTCAATTTCTGACAAAACGTTTGTGGATATTGATTGGTTGCAGGGGGGAAGAAAGTCGTCATCTTTGGTCTTCCTGTAAGAAATCTCTATCTTTTCATGTT
CCTTTATGTCTTGATCAGGTTTCTGAGTTCTGATGTTGTGCCGGAATATTCGTTTTCTGTGTTCAGGGGGGGCTTACACGGGAGTTTGTTCACAGCAGCATGTGCCTAGCTACAAGAGCC
ACATTGATAAGTTTAAAGCCAAAGGCATTGATTCTGTCATCTGTGTCTCTGTTAATGATCCCTTTGCTATCAATGGTTGGGCAGAGAAGCTTGGTGCCAAAGATGCAGTAAGTTCATCGA
TTTTTTTTTTGTTCCTATCTTTGTTCTTTGACACCAACCTAATCCGATGTTTAGTGTATGCTGATTTGGTTCTTTGCTTCAGAAAACTTGATTTGCAACATAACATATATTATTCGGTTC
CTGGTTTCGTTGTCTAAGAGTTTTCAGTGGTGAAGATGGTTCATTTAGGAATCTTTTAACTCCTCAAGTATGTAACTCTTGTTGACGTCCTGATAGTAATCAACCTCTTATAGTTAGAAC
TATATTACTCTATTATTCACGTTGTCTGTGGTCTCAAGATTTTATATTACACCAATAGACGATAAACAGATCTGATTCTATGATTAAATGGACTTCCCTTATTAGAAAGTTCATAATTCT
TGATATGGACTAGCATTACAATAGATTTCTATGTTTATGTTCGGATAAGTTTACGTGCTAGAAGAAATGACTTAAATGTGATGCTCTTGAACGTTGTCTATGATTACCTTCACATTAATA
GACGATAAAAGAATTTGATTCTATGATTAAATGGACTTCCCTCATTAGAAAGTTCATAATTCTTTATATCGACTAGTACTACATGCTAGAACAAATGACTTAATGTGATGCTCTTGAACG
TTGTCATACCAGATATTGAGTTTTATGGAGATTTTGATGGGAAATTTCACAAAAGCTTGGGGCTAGACAAGGATCTCTCTGCTGCATTGCTCGGGCCACGGTCTGAGAGGTAATATACTG
GAAAGTCCATTTGTAGAAATGTTTGTATCGTAAACCATTGATCTAACAGATTCGTTGGATTTATGATGTCCATGTTCAGATATGGTCGGCTTATGTAGAAGACGGGAAGGTTAAGGCGGT
GAATGTGGAAGAAGCACCGTCTGACTTCAAGGTTACAGGGGCAGAAGTCATCTTAGGACAGATCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ACTATACAGT AATCGAAGGA ACCAAGAAAC GGTCTCAATC TTATTTTCAG CGATGGCGAT GTCAATTCTA AAGCTAAGAA ATTTATCGGC ACTAAGATCG GCGGCAAATA GTGCCCGGAT CGGAGTTTCA TCGAGGGGTT TCTCAAAGCT CGCGGAAGGC ACTGACATAA CCTCGGCGGC GCCTGGCGTT TCTCTCCAGA AAGCTCGCAG CTGGGACGAA GGTGTTTCCT CCAAATTCTC CACCACGCCA TTGTCAGATA TCTTCAAGGG GAAGAAAGTC GTCATCTTTG GTCTTCCTGG GGCTTACACG GGAGTTTGTT CACAGCAGCA TGTGCCTAGC TACAAGAGCC ACATTGATAA GTTTAAAGCC AAAGGCATTG ATTCTGTCAT CTGTGTCTCT GTTAATGATC CCTTTGCTAT CAATGGTTGG GCAGAGAAGC TTGGTGCCAA AGATGCAATT GAGTTTTATG GAGATTTTGA TGGGAAATTT CACAAAAGCT TGGGGCTAGA CAAGGATCTC TCTGCTGCAT TGCTCGGGCC ACGGTCTGAG AGATGGTCGG CTTATGTAGA AGACGGGAAG GTTAAGGCGG TGAATGTGGA AGAAGCACCG TCTGACTTCA AGGTTACAGG GGCAGAAGTC ATCTTAGGAC AGATCTAAAA AGTATTTCCA GAGTTGCTGT TTCTTCTGAG TTGCAACTGA TAATAAGTTT GATCCGAACA TGTCTCAAGG ATCAGACCAA GTAACAGCTT CACTTCTTTT GTTTTGTTTC CACAGTTTCA GTTTAAATAA AACTTATGTG TCTTGCCGTT TCTCACCAAA TGTAAATCTG GTTCATAATA
TGAATAAGAA ACCAATGTGG TTGAGGGATA TGATTTTTCG TGTCCCCATT GTCAAC

Retrieve as FASTA