View Redoxidase 7475

Entry information : AlyPrxII06 (AlyPrxIIF)

Entry ID	7475
Creation	2010-08-10 (Christophe Dunand)
Last sequence changes	2010-08-10 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyPrxII06 (AlyPrxIIF)

Name (synonym)

AlyPrxII06 (AlyPrxIIF)

Class

Atypical 2-Cysteine peroxiredoxin (type II) [Orthogroup: PrxII001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyPrxII06 start..stop	S start..stop
AtPrxII06	405	5.19e-147	1..201	1..201
TsPrxII06	391	2.16e-141	1..201	1..201
ThasPrxII03	363	4.03e-130	1..201	1..201
CclPrxII05	319	1.61e-112	1..201	24..224

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7475' 'complement(join(2409145..2409250,2409341..2409435,2409878..2410036,2410130..2410159,2410246..2410461))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2410246..2410461	214	N° 2	2410130..2410159	28	N° 3	2409878..2410036	157	N° 4	2409341..2409435	93
N° 5	2409145..2409250	104
complement(join(2409145..2409250,2409341..2409435,2409878..2410036,2410130..2410 159,2410246..2410461))

Literature and cross-references AlyPrxII06 (AlyPrxIIF)

DNA ref.	Phytozome 12: scaffold_3 (2410461..2409145)

Protein sequence: AlyPrxII06 (AlyPrxIIF)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	201 (318)
PWM (Da):	21321.03 (34421.1)
PI (pH):	9.35 (5.25)	Peptide Signal:	cut: 21 range:21-338

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAMSILKLRNLSALRSAANSARIGVSSRGFSKLAEGTDITSAAPG
VSLQKARSWDEGVSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVVCVSVNDPYAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGKVKAVNVEEAPSDFKVT
GAEVILGQI

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 3, 4 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGATGTCAATTCTAAAGCTAAGAAATTTATCGGCTTTAAGATCGGCCGCAAATAGTGCCCGGATCGGAGTTTCCTCGAGGGGTTTCTCAAAGCTTGCGGAGGGCACTGACATAACC
TCGGCGGCTCCCGGCGTCTCTCTCCAGAAAGCTCGGAGCTGGGACGAAGGCGTTTCCTCCAAATTCTCCACCACACCATTGTCAGATATCTTCAAGGTTCGATTCTCTCTTTTCGGACAA
TTTCAATTCAGAGGGGAATTTCAATTTCTGACAAAACGTTTGTGGATATTGATTGGTTACAGGGGGGAAGAAAGTCGTCATTTTTGGACTCCCTGTAAGAAAATTTCTATCCTTTCATCT
TCCTCTATGTCTTGATCATGTTTCTGAGTTCTGATGTTGTGCCGGAATATCTGTTTTCTGTGTGCAGGGGGGGCTTACACGGGAGTTTGTTCGCAGCAGCATGTGCCTAGCTACAAGAGC
CACATTGATAAGTTTAAGGCTAAAGGCATTGATTCTGTCGTATGTGTCTCTGTTAATGATCCCTATGCTATCAATGGTTGGGCTGAGAAGCTTGGTGCCAAAGATGCAGTAAGTTCATCC
ATGTTTAGTGTCTGCTGGTTTGGTTATTTGCTTCAGAAAACTTGATTTTGAAACATGATATTATATTATCCGGTTCCTGGTTTTGTTGTCTAAGAGTTTTTGAGTGGTGAAGATGGATCA
TTTAGGAATCTTTTAACTCCTTTTGGTATGTAGCTCTTGTTGACGTCCTGATAGTAATCTACCTCTTATAGTTAGGACTATTACTCTATTATTTCACATCATCTATGGTCTCAAGCTTAC
ATTCACATCAATAGACGATAAAAAAGATTTGATACTATGATTAACTTGACAACCCTTGTTATTTTATTAGAAAATTCATAATTCTTGATATGGACTAGCATTACAATATATTTCTATGTT
TATGTTCGGATAGTGTTACATGCTAGAACTAATGACTTAATGTGATGCTCTTAAACTTTTGTCATACCAGATATTGAGTTTTATGGGGATTTTGATGGGAAATTCCACAAAAGCTTGGGG
CTAGACAAGGATCTCTCTGCTGCATTACTCGGGCCACGGTCTGAGAGGTAATACACTGCAAAGTCCATTTGTAGAAATGTTTGTATCGTGAACCATTGATCTAACAGATTCGTTGGAATT
ATGATGTCCATGTTCAGATATGGTCGGCTTATGTAGAAGACGGTAAGGTTAAGGCGGTGAATGTGGAAGAAGCACCGTCTGACTTCAAGGTTACAGGGGCAGAAGTCATCTTAGGACAGA
TCTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA