Sequence Properties
first value : protein second value (mature protein) |
Length (aa): |
492 |
PWM (Da): |
56782.27 |
|
PI (pH): |
7.12 |
|
Sequence
Send to BLAST
Send to Peroxiscan
|
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MDPYKYRPASSYNSPFFTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPR GFAVKFYTRGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLNMFTFLFDDIGIPQDYRHMDGSGVNTYMLINKAGKAHYVKFHWKPTCGVKSLLEEDAI RVGGTNHSHATQDLYDSIAAGNYPEWKLFIQIIDPADEDKFDFDPLDVTKTWPEDILPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQTRVFSYADTQRHRLGPNYL QLPVNAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDQVRHAEKYPTPPAVCSGKRERCIIEKENNFKEPGERYRTFTPERQERFIQRWIDALSDPRITHEIRSIWISYWSADKSLGQKL ASRLNVRPSI* |
Retrieve as FASTA
|
|
Remarks |
Complete sequence from genomic (7 introns), 7 mRNA and 440 ESTs. Cultivar="Landsberg erecta" and "Columbia". Three SwissProt/TREMBL accessions: P25819, Q940G2 and Q2V3B7 (1 mismatch). |
Promoter►
Send to BLAST
Send to cis Analysis
|
|
Terminator +►
Send to BLAST
Send to cis Analysis
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
AACGAGTGAA AGAATTCTTG ATTGGCCTTT CTGTGGTTGT TAATTAGCAG AGAAAAGAAA ATGGGAAGAG ATCAAAGTTG CGATAATACA ATCTTCATCA TGTGGATCTT CTGTGCTATG
TTATAATAGT ATCTGTTTAA AGACCAAAAG AACCTTGTGT GTTGTTGTGT CTCTCGTTTA TCAGAATAAT ACATTATACA TTGAAGATTT ATAATCCGTG GTGTTACTTG ATGAAAGCTC
CTTCTTCCTT GAAAGATTGT GACATATTCT TATATATTTC TCATATATTA ACGAATGTAA TCCCGTAAGA GCTGTCGACA AAGACGTGAT TTTTAGTCTG CATGTTCTGG ACGAAAGGGA
ATAGCAAAGT ATGAAACGAA AAAGACAAGA AAATCCATAA ATTCTTATGT GTGGGTATTA GGGAATTTAC AATAGTTGTC AATATGTGTT GTAACAGTGG CCACATTTGT GTATAACGTC
GTTGTATCAA GTGTGGGGTG TCGAGAGTCT TTAGATTTGG TGTGAATAAT CTGACAATTT GGATTTGAAC TCTGCTTTGA CATCCTGACA TTAGAAAATA AACTTGGTTT TGACATTTTG
GGGTTTGTAT TTGTGACAAG TACTGTTCAA ATGATATAAA CAAGAATGAC TTTTTAGTTA AAATTTGATA ATATTACAAA GTATGGTTAC ATGCAGTTGA TCGATAATTC AGAACCAAAA
CCAAACTTCT CTTAAAAATA AGGAAAATAA AAAGAATCAC CAAATGGTTT TCTCCGAGAG GAGTTTCTGA AGCAAGATTA CGAGATTTTG TTCGTACAGG TGACAATAAT ACGAGTGATA
TGGACCCAAA AAAACCTCTC TTTCTTCTAT AAGAACTACA AAGATTTCAA CTTGTCTCAT TTACCTGAAG AAGCTTTTAC TTTCTCAGTA GAGGCTAAAA CCAAAGAAAG GGCTGATGAC
AATTCCCAAT CCAAGACCAA TAGCCACAAG TGACGAAACC
|
Retrieve as FASTA
|
|
DNA ►
Send to BLAST
|
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGATCCTTACAAGGTAAACCCTTCTTTCTTTTCTCTCTAACCTTTTCGTCTTTTGTAATTTCTCCGTATAAACTGGATTGAAACGTTGTTATTAGCTTATGGAATTGCACCCAAAGTT TTGACCTTTTTTTCTACTCGAATCTGCAAATATACAATTAAGTCTTTCCATTGCTCTAAGATCATGTGCCTTTTGACTTGTGATTCTTTCGAATCATTGTGGTTTTTCTCTGATGTTAAT TTTAATTTCCTTTGCAATTGATGATGATGATGCAGTATATCGTCCAGCTAGTTCTTACAACTCTCCCTTCTTCACCACCAACTCTGGTGCTCCTGTATGGAACAACAACTCCTCCATGAC CGTTGGACCCAGAGGTACCTCTTCTTCTCCCATGAATAAGTCTGTTCTCCTCAATGTTATTGTTGCATTTCTGATTGTTTTTTTGGGCAGGTGTCCTATCCTTCTTGAGGATTACCATCT CGTTGAGAAGCTTGCCAATTTCGACAGGGAACGGATTCCAGAGCGTGTGGTTCATGCCAGAGGAGCCAGTGCTAAAGGTTTCTTTGAGGTCACTCATGATATCTCTAACCTCACTTGTGC TGACTTTCTCCGAGCTCCCGGTGTTCAGACTCCTGTCATTGTCCGGTTCTCCACCGTTATCCATGAGCGTGGAAGTCCCGAGACCTTGAGAGACCCTCGTGGTTTTGCAGTCAAGTTCTA CACCAGAGAGGTCAGTTAGTAGTTTGTAACATTTAAGAATGCTAGCAATTACTTATATACTAAGCAAATGATCATTCTTTGTATGCAGGGGGGAACTTTGATCTTGTTGGAAACAACTTT CCTGTTTTCTTCATCCGCGATGGGATGAAGTTCCCTGACATGGTCCACGCTCTTAAGCCGAACCCAAAATCTCACATCCAAGAGAACTGGAGAATCCTTGACTTCTTCTCCCACCACCCT GAAAGTTTGAACATGTTCACTTTCCTCTTCGATGATATCGGTATCCCACAAGATTACAGGCACATGGATGGTTCAGGTGTCAATACATACATGTTGATCAACAAAGCTGGCAAAGCTCAC TACGTGAAGTTCCATTGGAAACCAACTTGTGGAGTCAAGTCTCTTTTGGAAGAAGATGCAATTCGTGTTGGAGGAACCAACCACAGTCATGCGACTCAAGACTTGTATGACTCTATAGCT GCTGGAAACTACCCTGAATGGAAGCTCTTTATCCAAATCATTGATCCTGCTGATGAAGACAAGTTCGACTTTGACCCGCTCGATGTGACCAAGACCTGGCCTGAGGATATCTTGCCTCTT CAACCTGTTGGACGTATGGTGTTGAACAAGAACATTGACAACTTCTTTGCAGAGAATGAGCAACTTGCTTTCTGTCCTGCAATTATTGTCCCAGGGATACATTACTCAGATGATAAGCTG CTTCAAACCCGTGTCTTCTCCTATGCCGATACTCAGAGACACCGTCTTGGACCAAACTACCTTCAGCTGCCAGTCAATGCTCCAAAATGTGCTCACCACAACAACCACCATGAGGGATTC ATGAATTTCATGCACAGGGACGAGGAGGTACTTAATAGTACACTATCAATATCTTTATATCGAACTTGAAGCTAGAATACCATAGTCTTACAAGAAGCTGTTGTTACAGGTGTTAACTAC TTCCCGTCGAGGTATGACCAGGTTCGTCATGCTGAGAAGTATCCAACTCCGCCTGCTGTCTGTTCTGGAAAACGTGAGAGGGTCAGTAATCAACTCTGTTTTCCTCTCTGTTTCTGTTTC CCATGGATTGGTTCACTTAAGAACATATGATCTAAAAGTTTCGAAATCTGTTTTTTTTTCAGTGTGCATTATTGAGAAAGAGAACAACTTCAAGGAGCCTGGAGAGAGATACCGTACCTT TACACCAGAGAGGTACTAATTGTTTTATTTTTGTAATGATGCTTAATGCATAAAAGGAACATCTGTGTTCTTAACGTTTTACGGTATGTTTTCAACTTCAGGCGCAAGAACGATTCATCC AGAGATGGATTGATGCCCTATCCGACCCACGCATCACGCATGAAATCCGCAGTATCTGGATCTCTTACTGGTCTCAGGTCTGAAATCTTGATCTCTGTTACTGTCATTGTCTCGTTCTTC AAGTCTCAGCAGTTGAAAAGTTGTCAAGTTTTAAACATTTTTGACTGATTGGTTAAAAATGTGTGAAACAGGCGCTGATAAGTCTTTGGGACAGAAGCTGGCAAGCCGTCTGAACGTGAG ACCAAGCATCTAA |
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGGATCCTTACAAGTATCGTCCAGCTAGTTCTTACAACTCTCCCTTCTTCACCACCAACTCTGGTGCTCCTGTATGGAACAACAACTCCTCCATGACCGTTGGACCCAGAGGTCCTATC CTTCTTGAGGATTACCATCTCGTTGAGAAGCTTGCCAATTTCGACAGGGAACGGATTCCAGAGCGTGTGGTTCATGCCAGAGGAGCCAGTGCTAAAGGTTTCTTTGAGGTCACTCATGAT ATCTCTAACCTCACTTGTGCTGACTTTCTCCGAGCTCCCGGTGTTCAGACTCCTGTCATTGTCCGGTTCTCCACCGTTATCCATGAGCGTGGAAGTCCCGAGACCTTGAGAGACCCTCGT GGTTTTGCAGTCAAGTTCTACACCAGAGAGGGGAACTTTGATCTTGTTGGAAACAACTTTCCTGTTTTCTTCATCCGCGATGGGATGAAGTTCCCTGACATGGTCCACGCTCTTAAGCCG AACCCAAAATCTCACATCCAAGAGAACTGGAGAATCCTTGACTTCTTCTCCCACCACCCTGAAAGTTTGAACATGTTCACTTTCCTCTTCGATGATATCGGTATCCCACAAGATTACAGG CACATGGATGGTTCAGGTGTCAATACATACATGTTGATCAACAAAGCTGGCAAAGCTCACTACGTGAAGTTCCATTGGAAACCAACTTGTGGAGTCAAGTCTCTTTTGGAAGAAGATGCA ATTCGTGTTGGAGGAACCAACCACAGTCATGCGACTCAAGACTTGTATGACTCTATAGCTGCTGGAAACTACCCTGAATGGAAGCTCTTTATCCAAATCATTGATCCTGCTGATGAAGAC AAGTTCGACTTTGACCCGCTCGATGTGACCAAGACCTGGCCTGAGGATATCTTGCCTCTTCAACCTGTTGGACGTATGGTGTTGAACAAGAACATTGACAACTTCTTTGCAGAGAATGAG CAACTTGCTTTCTGTCCTGCAATTATTGTCCCAGGGATACATTACTCAGATGATAAGCTGCTTCAAACCCGTGTCTTCTCCTATGCCGATACTCAGAGACACCGTCTTGGACCAAACTAC CTTCAGCTGCCAGTCAATGCTCCAAAATGTGCTCACCACAACAACCACCATGAGGGATTCATGAATTTCATGCACAGGGACGAGGAGGTTAACTACTTCCCGTCGAGGTATGACCAGGTT CGTCATGCTGAGAAGTATCCAACTCCGCCTGCTGTCTGTTCTGGAAAACGTGAGAGGTGCATTATTGAGAAAGAGAACAACTTCAAGGAGCCTGGAGAGAGATACCGTACCTTTACACCA GAGAGGCAAGAACGATTCATCCAGAGATGGATTGATGCCCTATCCGACCCACGCATCACGCATGAAATCCGCAGTATCTGGATCTCTTACTGGTCTCAGGCTGATAAGTCTTTGGGACAG AAGCTGGCAAGCCGTCTGAACGTGAGACCAAGCATCTAA |
Retrieve as FASTA
|
|
cDNA►
Send to BLAST
|
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATTTATAAAT AAGGCAAGTG AATATAAAAT AGTGCCTCAT CATCATCAGT ACCATCTCCT CGTTTTGATA AAAATCTCTG AATCTCTCCA AGCTCTCTTC TCATCAAACC ATGGATCCTT
ACAAGTATCG TCCAGCTAGT TCTTACAACT CTCCCTTCTT CACCACCAAC TCTGGTGCTC CTGTATGGAA CAACAACTCC TCCATGACCG TTGGACCCAG AGGTCCTATC CTTCTTGAGG
ATTACCATCT CGTTGAGAAG CTTGCCAATT TCGACAGGGA ACGGATTCCA GAGCGTGTGG TTCATGCCAG AGGAGCCAGT GCTAAAGGTT TCTTTGAGGT CACTCATGAT ATCTCTAACC
TCACTTGTGC TGACTTTCTC CGAGCTCCCG GTGTTCAGAC TCCTGTCATT GTCCGGTTCT CCACCGTTAT CCATGAGCGT GGAAGTCCCG AGACCTTGAG AGACCCTCGT GGTTTTGCAG
TCAAGTTCTA CACCAGAGAG GGGAACTTTG ATCTTGTTGG AAACAACTTT CCTGTTTTCT TCATCCGCGA TGGGATGAAG TTCCCTGACA TGGTCCACGC TCTTAAGCCG AACCCAAAAT
CTCACATCCA AGAGAACTGG AGAATCCTTG ACTTCTTCTC CCACCACCCT GAAAGTTTGA ACATGTTCAC TTTCCTCTTC GATGATATCG GTATCCCACA AGATTACAGG CACATGGATG
GTTCAGGTGT CAATACATAC ATGTTGATCA ACAAAGCTGG CAAAGCTCAC TACGTGAAGT TCCATTGGAA ACCAACTTGT GGAGTCAAGT CTCTTTTGGA AGAAGATGCA ATTCGTGTTG
GAGGAACCAA CCACAGTCAT GCGACTCAAG ACTTGTATGA CTCTATAGCT GCTGGAAACT ACCCTGAATG GAAGCTCTTT ATCCAAATCA TTGATCCTGC TGATGAAGAC AAGTTCGACT
TTGACCCGCT CGATGTGACC AAGACCTGGC CTGAGGATAT CTTGCCTCTT CAACCTGTTG GACGTATGGT GTTGAACAAG AACATTGACA ACTTCTTTGC AGAGAATGAG CAACTTGCTT
TCTGTCCTGC AATTATTGTC CCAGGGATAC ATTACTCAGA TGATAAGCTG CTTCAAACCC GTGTCTTCTC CTATGCCGAT ACTCAGAGAC ACCGTCTTGG ACCAAACTAC CTTCAGCTGC
CAGTCAATGC TCCAAAATGT GCTCACCACA ACAACCACCA TGAGGGATTC ATGAATTTCA TGCACAGGGA CGAGGAGGTT AACTACTTCC CGTCGAGGTA TGACCAGGTT CGTCATGCTG
AGAAGTATCC AACTCCGCCT GCTGTCTGTT CTGGAAAACG TGAGAGGTGC ATTATTGAGA AAGAGAACAA CTTCAAGGAG CCTGGAGAGA GATACCGTAC CTTTACACCA GAGAGGCAAG
AACGATTCAT CCAGAGATGG ATTGATGCCC TATCCGACCC ACGCATCACG CATGAAATCC GCAGTATCTG GATCTCTTAC TGGTCTCAGG CTGATAAGTC TTTGGGACAG AAGCTGGCAA
GCCGTCTGAA CGTGAGACCA AGCATCTAAA ACGAGTGAAA GAATTCTTGA TTGGCCTTTC TGTGGTTGTT AATTAGCAGA GAAAAGAAAA TGGGAAGAGA TCAAAGTTGC GATAATACAA
TCTTCATCAT GTGGATCTTC TGTGCTATGT TATAATAGTA TCTGTTTAAA GACCAAAAGA ACCTTGTGTG TTGTTGTGTC TCTCGTTTAT CAGAATAATA CATTATACAT TGAAGATTTA
TAATCCGTGG TGTTACTTGA TGAAAGCTCC TTCTTCCTTG AAAGATTGTG ACATATTCTT ATATATTTCT CATATATTAA CGAATGTAAT CCCGTAAGAG CTGTCGACAA AGACGTGATT
TTTAGTCTGC
|
Retrieve as FASTA
|
|