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Entry information : Mt2CysPrx01 (Medtr1g105090.1 [4.0] / Medtr1g105090[3.5] / Mt2CysPrxA)
Entry ID 5150
Creation 2007-04-08 (Christophe Dunand)
Last sequence changes 2014-07-31 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-05-20 (Catherine Mathe)
Peroxidase information: Mt2CysPrx01 (Medtr1g105090.1 [4.0] / Medtr1g105090[3.5] / Mt2CysPrxA)
Name (synonym) Mt2CysPrx01 (Medtr1g105090.1 [4.0] / Medtr1g105090[3.5] / Mt2CysPrxA)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue types Flowers
Leaves
Mixed tissues
Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Mt2CysPrx01
start..stop		 S start..stop
Pt2CysPrx01 427 1.91e-153 1..267 1..269
Ps2CysPrx 419 3.85e-150 1..267 1..263
Pt2CysPrx02 417 9.56e-150 1..267 1..263
Mt2CysPrx02 416 3.79e-149 23..267 19..265
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5150' 'join(25005125..25005334,25006363..25006437,25006582..25006663,25006747..25006826,25007861..25007986,25008390..25008503,25008643..25008759)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 25005125..25005334 208 N° 2 25006363..25006437 73 N° 3 25006582..25006663 80 N° 4 25006747..25006826 78
N° 5 25007861..25007986 124 N° 6 25008390..25008503 112 N° 7 25008643..25008759 115  
join(25005125..25005334,25006363..25006437,25006582..25006663,25006747..25006826 ,25007861..25007986,25008390..25008503,25008643..25008759)


exon

Literature and cross-references Mt2CysPrx01 (Medtr1g105090.1 [4.0] / Medtr1g105090[3.5] / Mt2CysPrxA)
Literature Cheung,F., Moskal,W., Cooper,J.D., Xiao,Y., May,G.D. and Town,C.D. Construction and analysis of normalized cDNA library from flowers,seeds and stems of Medicago truncatula
DNA ref. GenBank:   AC229736.4 (128601..132231) Phytozome 12:   chr1 (25005125..25008759)
EST ref. GenBank:   DW015306 [5' end]
Cluster/Prediction ref. Phytozome Gene 12:   31099141 UniGene:   Mtr.14443
Omic ref. Gene atlas:   Mtr.12260.1.S1_at Legoo:   Mtr.12260.1.S1_at
Protein sequence: Mt2CysPrx01 (Medtr1g105090.1 [4.0] / Medtr1g105090[3.5] / Mt2CysPrxA)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   267 (295)
PWM (Da):   %s   29059.89 (31990.1)  
PI (pH):   %s   6.36 (8.91) Peptide Signal:   %s   cut: 23 range:23-317
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MACSATTTSASSLFSSLNPKSSLFSPKLPSSSTLSIPNSLPKPFS
LPSLSFTRPSLHHSSRRSSFLVKASSELPLVGNAAPDFEAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFEAINTEILGVSVDSFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYGVLIPDQGIALRGLFIIDKEGIIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAV*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 6 introns) and 27 ESTs. DW015306 (not included in the unigene). Cultivar="A17".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATGCTCAGCTACTACTACCTCTGCTTCTTCTCTCTTCTCATCTCTAAACCCTAAATCCTCACTTTTCTCTCCCAAATTACCCTCTTCTTCTACTCTCTCTATCCCCAATTCTCTT
CCTAAACCATTCTCTCTCCCTTCACTTTCCTTCACTCGCCCCTCGCTTCATCATTCTTCTCGCCGTAGTAGCTTTCTTGTTAAAGCCTCTCTGTAAGCATTCCCCCAATTTTGTTTTTGA
AATTTTCTGCATTGTTGAAAATGTTACTGTTGTTTATTGCTGTGTGTGTTTTTTCTGTATCTTAATTATGTTAATTAAACATTAATTGATTATTGGGTTTGTTGATAATTAGATATGCTA
GTTGGTTGTGAAATTTGTTTTAATTTGAGTATTTCAGCAACACTGCTTTAGTGCATTTCAGTATTTTTAAGCTTAAAGTATTGAAATTTGTATAATATTTTATTTTTGTTGACAATTACA
ATATTTCTAGTTCGTGTTGTATTTTTAGGATTTTTACATTTAATCTCTGAATTTTAGCATAAGCTTGGATTGACTTATATGAGCTTATTCACCTGTATTATGCATGTGGATAAGCTCATA
TAAGGCCCCCTAAATTGACAGGCTGTATTAGCATTTGTCAGTCTGTTTGGGAGAGCTTATGAAAACAACTTATGACTTTCTATAGTAAGATATTTTAAGCTTGTTTTTATAAGCTCTCCA
GGATAGCTTATGAAAACAACTTATAGCTTATATGAAAACAAGTTGACTTCATTTTGACCTACAATGCTTTATTGCATTTGGGTATTTTTAAGCATAAAGTATTAGAATGTCTACAATATT
TCTAGTTCATATGCATTTTTCGGTTTTTTGTCTTTAATCACTAAATCTTAGGGTCTGCTTGGATTGACTTATTTGAGCGCTGTTTTCATCTTATTTCCAAATTCAATAAGATCTCCAAGA
TAGCTTATGAAAACAACTTATAGCTTATATGAAAACAATTTGACTTTATTTTACCGTCTGTTATAGAAAACAGTTTGACTATACATAAGCAAGTTGTTTATCCAAATTATGGCCTTGCTC
TGAGCTAGAATGTTCAATGCATTTGGGTGTTTTTAAGTTTTAAGCATAAAGTATTGAAAATTTGAAATTTCTTCAATATTTCTAGTTCATGTGCGTTTTTGAGAATTTTTCTTTAAAATG
ACCAAATCTTAGTCTTTAAACTTCTTGTTTGACCTCACAGAGTGAGCTTCCATTGGTTGGAAATGCAGCACCTGATTTTGAAGCAGAGGCTGTTTTTGATCAAGAGTTTATCAACACGTA
CGTGGCCACCAACCAAAGCAAATAAGAATACTGATTCTTACTAGATTGAATATTTTCTTTGCATTTTTATTATGTGGTTATTTTCGAGTAATTGCTGTTGGAAACTTTCATGTTTGATTG
ACTAAATCATTTTCATTCCAGGTCAAACTCTCTGACTACATTGGGAAGAAGTATGTTATCCTCTTTTTCTACCCATTGGACTTCACCTTTGTTTGCCCAACAGAGGTTGGTTAGTCAGGT
CGATCTAGTCGTGCTTTTAAATTTCTTTCTTTAACTTCCTAATGATAATGTGTGATACTTGACTGCAGAAATCACTGCTTTCAGTGACCGACATGCAGAGTTTGAGGCAATAAATACCGA
GATTTTGGGTGTTTCAGTGGACAGTGTGTGGTACGTTGTGTGTCAATGTTTGTCTGCATAATTTCATGTTATACTTCATTATGACATACCTGCTTTCTGTCTATACCGAGATTTTGGGTG
TTTCAGTGGACAGTGGTACATTGGCTTAGACTGTTTCTTTTATCATTACTGTTGACCTAGTTAATGTTGTGTGTCAATGTGTGTGTGTATGCATAAGTTCATGTTATATTTCATTATGAC
ATACCTGCTTTGTGTCTATTAGTTAGCAAGAAAAATGAATCAACTGCAAAGGATTACAGGGCATTTTAAAGATTCCATACTGTTTAAGGATTTATTTTGTAGAGATAAACTAGTTCTTAC
TATAAGGTTAACAGTTCATACATGTCGTATTTTCACGTCTCTGAATAATTGCTGAATTGAATAAGAGTATTGTCAGAGGGAATTACTTCATAAATAAAGGAAAATGAAAAAATGTGAATG
AACATTTGTTCAAACATAAATAATTGAAATATATCTTGTTAATCTACATATGTAATGAGATACATAGCATTTGTATACCAATGCACACAGTCTTTACATAGACTGCAAGGATACGCTCAG
GGGCGGAGCCACCCCCCAGCTAGCCTGGGCTAATGCCCAGGCTCAGCTCCAACTTTCTTTGTAGCAAGCCCTACCATTACTAGAATTTTTAGCTTTTCCTGCGGATTTTTGTGTAAATTC
CGCAAGAAATGTATTTCCTGCAGATTTTGCCAAGGATTTAGGTTCTGCAGGAAAGATATATCCGTAGGAAATGTGAATTTATCTGCAGGAAATGTGAAATTATTCGTAGGAAGGAAGTAA
CGTTTTGCGATAAATTTTTTGCCCAGGCTCTATAAAATTCCTGGCTCCGCCACTGGATACGCTCACATGCTGAGTGCTGACACATACCCTTGAAAAACAAGGCTTGTTGTCTTAGTATCT
GATAGGTTCTTTATGTTCTTATGTATGTGGTATAACCTATGTAACAGAAATTCCAGCATCTGTTTCTTTTTTTTATTAGTGACGCCGTTGTTTCTATCGTGCAGTTCTCGCATCTTGCAT
GGGTTCAAACAGATAGAAAGTCAGGCGGCCTTGGTGACTTGAATTATCCTCTGGTTTCCGATGTCACCAAATCCATATCAAAATCTTACGGTGTTCTCATTCCTGATCAGAGGTATGTCC
TAACATATTAAAATAGTGTAACTTATGTATGGCTGGATTGTAGTAAAGCAACAGCCGTCTAGATTTTCTGTTGTATCATCTCTCCCTAAACGAACTTATCAAGGGTATGCCATATCTACG
GGGAATGCTCTCCCATTTGTAGAATTTCCCGAGTTATCGGACTTGCTATCTAATCAAAGCAAGTTTTTATTTGACTTTTTAAGGAATTGAACTAGGACATTGCTTTTCCTTCCCCAACAC
TTGTCCTTTACGCTCATATTTCAATGTTGTTTTGGAATGAAATTTACGATGCTTAATAGCATTAACCAGTCAAAAGTTGGCATCTAAACTATTGTCTTCCATTCCACTATTTTGGACTTG
TGTCATAATGTGCCTAAAAATTCCCAATGTTGCAGGGAATTGCATTGAGAGGATTGTTCATTATTGACAAGGAAGGGATTATTCAGCACTCTACCATCAACAACTTGGGAATTGGTAGAA
GTGTTGATGAGACAAAGAGAACACTACAGAGGTGATTATACAACTAATTAGAACCACATCAAGATTGAACAATATCTATTTAGAATATCACATTTTTATTTGTTCGCTTCTATATCCGTT
CTATCGTGTACATAACTTCATTGTTCCCTTGATGTGCATTTGTTTTGCAGGCCTTGCAGTATGTGCAGGAGAACCCAGATGAAGTTTGCCCTGCTGGATGGAAGCCTGGGGAGAAGTCCA
TGAAACCAGACCCAAAACTTAGCAAAGATTACTTTGCTGCGGTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCATGCTCAGCTACTACTACCTCTGCTTCTTCTCTCTTCTCATCTCTAAACCCTAAATCCTCACTTTTCTCTCCCAAATTACCCTCTTCTTCTACTCTCTCTATCCCCAATTCTCTT
CCTAAACCATTCTCTCTCCCTTCACTTTCCTTCACTCGCCCCTCGCTTCATCATTCTTCTCGCCGTAGTAGCTTTCTTGTTAAAGCCTCTAGTGAGCTTCCATTGGTTGGAAATGCAGCA
CCTGATTTTGAAGCAGAGGCTGTTTTTGATCAAGAGTTTATCAACGTCAAACTCTCTGACTACATTGGGAAGAAGTATGTTATCCTCTTTTTCTACCCATTGGACTTCACCTTTGTTTGC
CCAACAGAAATCACTGCTTTCAGTGACCGACATGCAGAGTTTGAGGCAATAAATACCGAGATTTTGGGTGTTTCAGTGGACAGTGTGTTCTCGCATCTTGCATGGGTTCAAACAGATAGA
AAGTCAGGCGGCCTTGGTGACTTGAATTATCCTCTGGTTTCCGATGTCACCAAATCCATATCAAAATCTTACGGTGTTCTCATTCCTGATCAGGGAATTGCATTGAGAGGATTGTTCATT
ATTGACAAGGAAGGGATTATTCAGCACTCTACCATCAACAACTTGGGAATTGGTAGAAGTGTTGATGAGACAAAGAGAACACTACAGGCCTTGCAGTATGTGCAGGAGAACCCAGATGAA
GTTTGCCCTGCTGGATGGAAGCCTGGGGAGAAGTCCATGAAACCAGACCCAAAACTTAGCAAAGATTACTTTGCTGCGGTGTAA

Retrieve as FASTA